EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSOMEG00000003925 (Gene tree)
Gene ID: 112144030
Gene Symbol: scrt1b
Alias: -
Full Name: scratch family transcriptional repressor 1
Gene Type: protein_coding
Species: Oryzias_melastigma
Status: putative
Strand: Plus strand
Length: 8706 bases
Position: chrNVQA01000006.1:9238305-9247010
Accession: 112144030
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOMEP00000003016	zf-C2H2	PF00096.26	6.5e-26	1	4
ENSOMEP00000003016	zf-C2H2	PF00096.26	6.5e-26	2	4
ENSOMEP00000003016	zf-C2H2	PF00096.26	6.5e-26	3	4
ENSOMEP00000003016	zf-C2H2	PF00096.26	6.5e-26	4	4
ENSOMEP00000003016	zf-met	PF12874.7	5.5e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOMET00000011542	-	4512	XM_024268337	ENSOMEP00000003016	280 (aa)	XP_024124105	UPI0002A484B7

Gene Model

Click here to download ENSOMEG00000003925's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOMEG00000003925's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSOMEG00000003925	scrt1b	57	43.750	ENSOMEG00000023102	-	71	39.516
ENSOMEG00000003925	scrt1b	52	37.647	ENSOMEG00000001598	-	62	37.647
ENSOMEG00000003925	scrt1b	55	38.532	ENSOMEG00000021492	-	60	38.532
ENSOMEG00000003925	scrt1b	52	32.593	ENSOMEG00000011124	-	71	32.593
ENSOMEG00000003925	scrt1b	65	39.850	ENSOMEG00000009071	-	61	40.179
ENSOMEG00000003925	scrt1b	51	38.750	ENSOMEG00000018279	-	67	37.500
ENSOMEG00000003925	scrt1b	95	40.074	ENSOMEG00000006591	snai2	98	38.971
ENSOMEG00000003925	scrt1b	96	65.049	ENSOMEG00000002661	scrt2	97	65.049
ENSOMEG00000003925	scrt1b	55	33.835	ENSOMEG00000019346	-	91	33.835
ENSOMEG00000003925	scrt1b	55	33.333	ENSOMEG00000021975	znf652	52	33.333
ENSOMEG00000003925	scrt1b	55	39.706	ENSOMEG00000021506	-	73	39.706
ENSOMEG00000003925	scrt1b	99	76.589	ENSOMEG00000000286	-	99	75.839
ENSOMEG00000003925	scrt1b	95	35.793	ENSOMEG00000023773	snai1a	98	33.824
ENSOMEG00000003925	scrt1b	76	37.500	ENSOMEG00000005143	prdm5	62	37.500
ENSOMEG00000003925	scrt1b	58	42.045	ENSOMEG00000019519	-	78	42.045
ENSOMEG00000003925	scrt1b	57	39.161	ENSOMEG00000004087	-	61	39.161
ENSOMEG00000003925	scrt1b	51	46.250	ENSOMEG00000012928	-	59	46.250
ENSOMEG00000003925	scrt1b	56	39.456	ENSOMEG00000013677	-	76	39.796
ENSOMEG00000003925	scrt1b	58	31.250	ENSOMEG00000009440	-	73	34.737
ENSOMEG00000003925	scrt1b	52	36.275	ENSOMEG00000013449	-	85	49.206
ENSOMEG00000003925	scrt1b	54	35.075	ENSOMEG00000015640	-	72	35.075

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOMEG00000003925	scrt1b	100	97.143	ENSAPOG00000009279	scrt1b	100	97.143	Acanthochromis_polyacanthus
ENSOMEG00000003925	scrt1b	99	77.273	ENSAPOG00000015197	-	99	76.325	Acanthochromis_polyacanthus
ENSOMEG00000003925	scrt1b	96	69.565	ENSAPOG00000003680	scrt2	96	69.565	Acanthochromis_polyacanthus
ENSOMEG00000003925	scrt1b	99	75.667	ENSACIG00000006586	-	99	74.916	Amphilophus_citrinellus
ENSOMEG00000003925	scrt1b	96	68.841	ENSACIG00000012604	scrt2	96	68.841	Amphilophus_citrinellus
ENSOMEG00000003925	scrt1b	100	93.214	ENSACIG00000013613	scrt1b	100	93.214	Amphilophus_citrinellus
ENSOMEG00000003925	scrt1b	96	58.140	ENSACIG00000001296	-	96	58.054	Amphilophus_citrinellus
ENSOMEG00000003925	scrt1b	100	97.143	ENSAOCG00000003910	scrt1b	100	97.143	Amphiprion_ocellaris
ENSOMEG00000003925	scrt1b	99	75.667	ENSAOCG00000023304	-	99	74.916	Amphiprion_ocellaris
ENSOMEG00000003925	scrt1b	96	69.565	ENSAOCG00000021557	scrt2	96	69.565	Amphiprion_ocellaris
ENSOMEG00000003925	scrt1b	99	75.667	ENSAPEG00000005677	-	99	74.916	Amphiprion_percula
ENSOMEG00000003925	scrt1b	96	69.565	ENSAPEG00000022558	scrt2	96	69.565	Amphiprion_percula
ENSOMEG00000003925	scrt1b	100	97.500	ENSAPEG00000000869	scrt1b	100	97.500	Amphiprion_percula
ENSOMEG00000003925	scrt1b	99	77.273	ENSATEG00000011660	-	99	76.224	Anabas_testudineus
ENSOMEG00000003925	scrt1b	96	64.725	ENSATEG00000023998	scrt2	97	64.725	Anabas_testudineus
ENSOMEG00000003925	scrt1b	96	54.952	ENSATEG00000003195	-	97	53.651	Anabas_testudineus
ENSOMEG00000003925	scrt1b	100	97.500	ENSATEG00000002302	scrt1b	100	97.500	Anabas_testudineus
ENSOMEG00000003925	scrt1b	76	76.995	ENSACAG00000016109	SCRT2	95	76.995	Anolis_carolinensis
ENSOMEG00000003925	scrt1b	100	96.071	ENSACLG00000007162	scrt1b	100	96.071	Astatotilapia_calliptera
ENSOMEG00000003925	scrt1b	99	73.597	ENSACLG00000012046	-	99	72.607	Astatotilapia_calliptera
ENSOMEG00000003925	scrt1b	98	82.734	ENSAMXG00000042624	SCRT1	99	81.655	Astyanax_mexicanus
ENSOMEG00000003925	scrt1b	82	73.529	ENSAMXG00000034158	scrt2	86	73.529	Astyanax_mexicanus
ENSOMEG00000003925	scrt1b	100	83.571	ENSAMXG00000038085	scrt1a	100	84.698	Astyanax_mexicanus
ENSOMEG00000003925	scrt1b	58	62.963	WBGene00000468	ces-1	61	61.677	Caenorhabditis_elegans
ENSOMEG00000003925	scrt1b	86	61.753	ENSCPBG00000027613	SCRT2	100	61.753	Chrysemys_picta_bellii
ENSOMEG00000003925	scrt1b	99	84.286	ENSCPBG00000018899	SCRT1	99	84.286	Chrysemys_picta_bellii
ENSOMEG00000003925	scrt1b	100	95.357	ENSCSEG00000008596	scrt1b	100	95.357	Cynoglossus_semilaevis
ENSOMEG00000003925	scrt1b	96	66.667	ENSCSEG00000021542	scrt2	96	66.667	Cynoglossus_semilaevis
ENSOMEG00000003925	scrt1b	98	76.094	ENSCSEG00000014892	-	98	75.338	Cynoglossus_semilaevis
ENSOMEG00000003925	scrt1b	99	75.667	ENSCVAG00000003190	-	99	74.916	Cyprinodon_variegatus
ENSOMEG00000003925	scrt1b	96	64.516	ENSCVAG00000021038	scrt2	97	64.516	Cyprinodon_variegatus
ENSOMEG00000003925	scrt1b	100	97.143	ENSCVAG00000009561	scrt1b	100	97.143	Cyprinodon_variegatus
ENSOMEG00000003925	scrt1b	100	86.121	ENSDARG00000100821	scrt1a	100	86.121	Danio_rerio
ENSOMEG00000003925	scrt1b	100	86.477	ENSDARG00000040214	scrt1b	100	86.477	Danio_rerio
ENSOMEG00000003925	scrt1b	97	65.000	ENSELUG00000023883	scrt2	96	66.333	Esox_lucius
ENSOMEG00000003925	scrt1b	99	88.849	ENSELUG00000005435	scrt1b	99	88.849	Esox_lucius
ENSOMEG00000003925	scrt1b	99	86.786	ENSELUG00000022228	scrt1a	99	86.786	Esox_lucius
ENSOMEG00000003925	scrt1b	83	71.983	ENSFALG00000005718	SCRT2	96	71.983	Ficedula_albicollis
ENSOMEG00000003925	scrt1b	96	61.993	ENSFDAG00000008733	SCRT1	97	61.993	Fukomys_damarensis
ENSOMEG00000003925	scrt1b	96	71.377	ENSFHEG00000005732	scrt2	96	71.377	Fundulus_heteroclitus
ENSOMEG00000003925	scrt1b	99	76.000	ENSFHEG00000009794	-	99	75.251	Fundulus_heteroclitus
ENSOMEG00000003925	scrt1b	100	96.429	ENSFHEG00000014820	scrt1b	100	96.429	Fundulus_heteroclitus
ENSOMEG00000003925	scrt1b	96	61.165	ENSGMOG00000019519	scrt2	95	61.165	Gadus_morhua
ENSOMEG00000003925	scrt1b	99	91.756	ENSGMOG00000000629	scrt1b	100	91.756	Gadus_morhua
ENSOMEG00000003925	scrt1b	57	93.548	ENSGMOG00000013833	-	54	93.548	Gadus_morhua
ENSOMEG00000003925	scrt1b	96	65.441	ENSGALG00000028912	SCRT2	97	65.809	Gallus_gallus
ENSOMEG00000003925	scrt1b	99	77.113	ENSGAFG00000009650	-	99	76.325	Gambusia_affinis
ENSOMEG00000003925	scrt1b	96	68.350	ENSGAFG00000003093	scrt2	96	67.905	Gambusia_affinis
ENSOMEG00000003925	scrt1b	100	96.786	ENSGAFG00000007636	scrt1b	100	96.786	Gambusia_affinis
ENSOMEG00000003925	scrt1b	99	73.311	ENSGACG00000004072	-	99	72.819	Gasterosteus_aculeatus
ENSOMEG00000003925	scrt1b	99	92.473	ENSGACG00000008982	scrt1b	99	92.473	Gasterosteus_aculeatus
ENSOMEG00000003925	scrt1b	99	84.892	ENSGAGG00000011736	SCRT1	100	84.892	Gopherus_agassizii
ENSOMEG00000003925	scrt1b	63	81.818	ENSGAGG00000020760	-	68	81.818	Gopherus_agassizii
ENSOMEG00000003925	scrt1b	96	65.074	ENSGAGG00000020761	SCRT2	96	65.074	Gopherus_agassizii
ENSOMEG00000003925	scrt1b	100	96.071	ENSHBUG00000016621	scrt1b	100	96.071	Haplochromis_burtoni
ENSOMEG00000003925	scrt1b	99	76.000	ENSHBUG00000019101	-	99	75.251	Haplochromis_burtoni
ENSOMEG00000003925	scrt1b	96	69.565	ENSHBUG00000012492	scrt2	96	69.565	Haplochromis_burtoni
ENSOMEG00000003925	scrt1b	96	66.894	ENSHCOG00000008116	scrt2	96	66.894	Hippocampus_comes
ENSOMEG00000003925	scrt1b	99	69.310	ENSHCOG00000016179	-	99	68.990	Hippocampus_comes
ENSOMEG00000003925	scrt1b	100	93.929	ENSHCOG00000016704	scrt1b	100	93.929	Hippocampus_comes
ENSOMEG00000003925	scrt1b	99	85.305	ENSIPUG00000004551	scrt1a	99	85.305	Ictalurus_punctatus
ENSOMEG00000003925	scrt1b	98	79.636	ENSIPUG00000005547	-	99	78.909	Ictalurus_punctatus
ENSOMEG00000003925	scrt1b	50	85.106	ENSSTOG00000032944	SCRT2	84	80.255	Ictidomys_tridecemlineatus
ENSOMEG00000003925	scrt1b	96	65.049	ENSKMAG00000018087	scrt2	97	65.049	Kryptolebias_marmoratus
ENSOMEG00000003925	scrt1b	100	96.786	ENSKMAG00000005484	scrt1b	100	96.786	Kryptolebias_marmoratus
ENSOMEG00000003925	scrt1b	99	74.333	ENSKMAG00000009489	-	99	75.251	Kryptolebias_marmoratus
ENSOMEG00000003925	scrt1b	96	64.194	ENSLBEG00000015419	scrt2	97	64.194	Labrus_bergylta
ENSOMEG00000003925	scrt1b	99	73.826	ENSLBEG00000023388	-	99	73.737	Labrus_bergylta
ENSOMEG00000003925	scrt1b	100	83.986	ENSLACG00000003588	SCRT1	99	83.986	Latimeria_chalumnae
ENSOMEG00000003925	scrt1b	96	55.305	ENSLOCG00000002246	scrt2	97	54.369	Lepisosteus_oculatus
ENSOMEG00000003925	scrt1b	100	88.256	ENSLOCG00000007573	scrt1b	100	88.256	Lepisosteus_oculatus
ENSOMEG00000003925	scrt1b	96	94.074	ENSMFAG00000035496	SCRT1	78	82.036	Macaca_fascicularis
ENSOMEG00000003925	scrt1b	96	65.049	ENSMAMG00000001291	scrt2	97	64.401	Mastacembelus_armatus
ENSOMEG00000003925	scrt1b	100	97.500	ENSMAMG00000011698	scrt1b	100	97.500	Mastacembelus_armatus
ENSOMEG00000003925	scrt1b	100	96.071	ENSMZEG00005005627	scrt1b	100	96.071	Maylandia_zebra
ENSOMEG00000003925	scrt1b	96	69.565	ENSMZEG00005026445	scrt2	96	69.565	Maylandia_zebra
ENSOMEG00000003925	scrt1b	99	76.000	ENSMZEG00005026702	-	99	75.251	Maylandia_zebra
ENSOMEG00000003925	scrt1b	83	70.563	ENSMGAG00000016579	SCRT2	96	70.563	Meleagris_gallopavo
ENSOMEG00000003925	scrt1b	100	95.357	ENSMMOG00000003327	scrt1b	100	95.357	Mola_mola
ENSOMEG00000003925	scrt1b	99	75.667	ENSMMOG00000018345	-	99	74.916	Mola_mola
ENSOMEG00000003925	scrt1b	96	65.359	ENSMMOG00000009272	scrt2	97	65.359	Mola_mola
ENSOMEG00000003925	scrt1b	100	97.500	ENSMALG00000012704	scrt1b	100	97.500	Monopterus_albus
ENSOMEG00000003925	scrt1b	96	68.953	ENSMALG00000013656	scrt2	96	68.953	Monopterus_albus
ENSOMEG00000003925	scrt1b	64	69.022	ENSNGAG00000020815	Scrt2	94	67.179	Nannospalax_galili
ENSOMEG00000003925	scrt1b	96	69.203	ENSNBRG00000007221	scrt2	96	69.203	Neolamprologus_brichardi
ENSOMEG00000003925	scrt1b	100	90.714	ENSNBRG00000013983	scrt1b	100	90.714	Neolamprologus_brichardi
ENSOMEG00000003925	scrt1b	99	75.667	ENSNBRG00000014882	-	99	74.916	Neolamprologus_brichardi
ENSOMEG00000003925	scrt1b	100	96.071	ENSONIG00000006007	scrt1b	100	96.071	Oreochromis_niloticus
ENSOMEG00000003925	scrt1b	96	61.733	ENSONIG00000003152	-	96	60.949	Oreochromis_niloticus
ENSOMEG00000003925	scrt1b	96	64.725	ENSONIG00000016758	scrt2	97	64.725	Oreochromis_niloticus
ENSOMEG00000003925	scrt1b	96	72.549	ENSONIG00000019809	-	99	71.803	Oreochromis_niloticus
ENSOMEG00000003925	scrt1b	99	74.086	ENSORLG00000022825	-	99	73.090	Oryzias_latipes
ENSOMEG00000003925	scrt1b	100	100.000	ENSORLG00000025651	scrt1b	100	100.000	Oryzias_latipes
ENSOMEG00000003925	scrt1b	96	64.725	ENSORLG00000024051	scrt2	97	64.725	Oryzias_latipes
ENSOMEG00000003925	scrt1b	100	100.000	ENSORLG00020012967	scrt1b	100	100.000	Oryzias_latipes_hni
ENSOMEG00000003925	scrt1b	96	64.725	ENSORLG00020011478	scrt2	97	64.725	Oryzias_latipes_hni
ENSOMEG00000003925	scrt1b	96	64.725	ENSORLG00015005524	scrt2	97	64.725	Oryzias_latipes_hsok
ENSOMEG00000003925	scrt1b	99	74.751	ENSORLG00015010104	-	99	73.754	Oryzias_latipes_hsok
ENSOMEG00000003925	scrt1b	100	100.000	ENSORLG00015019165	scrt1b	100	100.000	Oryzias_latipes_hsok
ENSOMEG00000003925	scrt1b	100	85.765	ENSPKIG00000020085	scrt1a	100	85.765	Paramormyrops_kingsleyae
ENSOMEG00000003925	scrt1b	100	86.833	ENSPKIG00000022303	SCRT1	100	86.833	Paramormyrops_kingsleyae
ENSOMEG00000003925	scrt1b	96	70.968	ENSPMGG00000016561	scrt2	96	70.968	Periophthalmus_magnuspinnatus
ENSOMEG00000003925	scrt1b	99	74.576	ENSPMGG00000021402	-	99	73.737	Periophthalmus_magnuspinnatus
ENSOMEG00000003925	scrt1b	100	92.500	ENSPMGG00000002260	scrt1b	100	92.500	Periophthalmus_magnuspinnatus
ENSOMEG00000003925	scrt1b	100	96.786	ENSPFOG00000017719	scrt1b	100	96.786	Poecilia_formosa
ENSOMEG00000003925	scrt1b	99	75.758	ENSPFOG00000005616	-	99	75.000	Poecilia_formosa
ENSOMEG00000003925	scrt1b	96	64.839	ENSPFOG00000007738	scrt2	97	64.839	Poecilia_formosa
ENSOMEG00000003925	scrt1b	96	70.758	ENSPLAG00000005765	scrt2	96	70.758	Poecilia_latipinna
ENSOMEG00000003925	scrt1b	99	75.758	ENSPLAG00000011718	-	99	75.000	Poecilia_latipinna
ENSOMEG00000003925	scrt1b	100	96.786	ENSPLAG00000009876	scrt1b	100	96.786	Poecilia_latipinna
ENSOMEG00000003925	scrt1b	99	75.758	ENSPMEG00000011706	-	99	75.000	Poecilia_mexicana
ENSOMEG00000003925	scrt1b	96	70.758	ENSPMEG00000001538	scrt2	96	70.758	Poecilia_mexicana
ENSOMEG00000003925	scrt1b	100	96.786	ENSPMEG00000013274	scrt1b	100	96.786	Poecilia_mexicana
ENSOMEG00000003925	scrt1b	99	75.084	ENSPREG00000012166	-	99	74.324	Poecilia_reticulata
ENSOMEG00000003925	scrt1b	96	64.839	ENSPREG00000001147	scrt2	97	64.839	Poecilia_reticulata
ENSOMEG00000003925	scrt1b	100	96.786	ENSPREG00000018985	scrt1b	100	96.786	Poecilia_reticulata
ENSOMEG00000003925	scrt1b	96	69.565	ENSPNYG00000013109	scrt2	96	69.565	Pundamilia_nyererei
ENSOMEG00000003925	scrt1b	99	76.000	ENSPNYG00000008865	-	99	75.251	Pundamilia_nyererei
ENSOMEG00000003925	scrt1b	100	96.071	ENSPNYG00000017733	scrt1b	100	96.071	Pundamilia_nyererei
ENSOMEG00000003925	scrt1b	100	85.765	ENSPNAG00000017415	scrt1a	100	85.765	Pygocentrus_nattereri
ENSOMEG00000003925	scrt1b	98	84.116	ENSPNAG00000027880	-	99	83.032	Pygocentrus_nattereri
ENSOMEG00000003925	scrt1b	100	86.477	ENSSFOG00015001195	SCRT1	100	86.477	Scleropages_formosus
ENSOMEG00000003925	scrt1b	99	73.841	ENSSMAG00000005122	-	99	72.517	Scophthalmus_maximus
ENSOMEG00000003925	scrt1b	99	94.624	ENSSMAG00000019207	scrt1b	99	94.624	Scophthalmus_maximus
ENSOMEG00000003925	scrt1b	99	76.333	ENSSDUG00000013215	-	99	75.585	Seriola_dumerili
ENSOMEG00000003925	scrt1b	98	64.901	ENSSDUG00000001637	scrt2	96	65.436	Seriola_dumerili
ENSOMEG00000003925	scrt1b	100	97.143	ENSSDUG00000007752	scrt1b	100	97.143	Seriola_dumerili
ENSOMEG00000003925	scrt1b	100	97.143	ENSSLDG00000017166	scrt1b	100	97.143	Seriola_lalandi_dorsalis
ENSOMEG00000003925	scrt1b	99	76.333	ENSSLDG00000016454	-	99	75.585	Seriola_lalandi_dorsalis
ENSOMEG00000003925	scrt1b	96	63.898	ENSSLDG00000013565	scrt2	97	64.401	Seriola_lalandi_dorsalis
ENSOMEG00000003925	scrt1b	96	66.790	ENSSPUG00000018637	SCRT2	97	66.790	Sphenodon_punctatus
ENSOMEG00000003925	scrt1b	96	69.928	ENSSPAG00000014018	scrt2	96	69.928	Stegastes_partitus
ENSOMEG00000003925	scrt1b	99	74.333	ENSSPAG00000006788	-	99	75.251	Stegastes_partitus
ENSOMEG00000003925	scrt1b	100	97.143	ENSSPAG00000002200	scrt1b	100	97.143	Stegastes_partitus
ENSOMEG00000003925	scrt1b	83	71.861	ENSTGUG00000006801	SCRT2	99	71.861	Taeniopygia_guttata
ENSOMEG00000003925	scrt1b	98	94.545	ENSTRUG00000011637	scrt1b	99	94.545	Takifugu_rubripes
ENSOMEG00000003925	scrt1b	85	77.778	ENSTRUG00000019558	-	81	76.639	Takifugu_rubripes
ENSOMEG00000003925	scrt1b	99	74.832	ENSTRUG00000012719	-	99	74.074	Takifugu_rubripes
ENSOMEG00000003925	scrt1b	96	67.698	ENSTRUG00000007620	scrt2	96	67.698	Takifugu_rubripes
ENSOMEG00000003925	scrt1b	100	94.286	ENSTNIG00000018384	scrt1b	100	94.286	Tetraodon_nigroviridis
ENSOMEG00000003925	scrt1b	96	70.609	ENSTNIG00000012473	scrt2	97	70.609	Tetraodon_nigroviridis
ENSOMEG00000003925	scrt1b	99	75.704	ENSXCOG00000019861	-	99	74.912	Xiphophorus_couchianus
ENSOMEG00000003925	scrt1b	100	96.429	ENSXCOG00000019675	scrt1b	100	96.429	Xiphophorus_couchianus
ENSOMEG00000003925	scrt1b	96	68.687	ENSXCOG00000014367	scrt2	96	68.243	Xiphophorus_couchianus
ENSOMEG00000003925	scrt1b	99	75.421	ENSXMAG00000015353	-	99	74.662	Xiphophorus_maculatus
ENSOMEG00000003925	scrt1b	96	65.161	ENSXMAG00000028567	scrt2	97	65.161	Xiphophorus_maculatus
ENSOMEG00000003925	scrt1b	100	96.429	ENSXMAG00000027885	scrt1b	100	96.429	Xiphophorus_maculatus