EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSOMEG00000005176 (Gene tree)
Gene ID: 112145983
Gene Symbol: cpsf4
Alias: -
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Oryzias_melastigma
Status: putative
Strand: Plus strand
Length: 7346 bases
Position: chrNVQA01000010.1:5444631-5451976
Accession: 112145983
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOMEP00000004231	zf-CCCH	PF00642.24	1.1e-20	1	2
ENSOMEP00000004231	zf-CCCH	PF00642.24	1.1e-20	2	2
ENSOMEP00000024495	zf-CCCH	PF00642.24	7.7e-16	1	2
ENSOMEP00000024495	zf-CCCH	PF00642.24	7.7e-16	2	2
ENSOMEP00000024495	zf-CCHC	PF00098.23	3.5e-06	1	1
ENSOMEP00000004231	zf-CCHC	PF00098.23	4.7e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOMET00000009508	-	3873	-	ENSOMEP00000004231	265 (aa)	XP_024127286	UPI000CF7D0B0
ENSOMET00000009530	-	627	-	ENSOMEP00000024495	208 (aa)	-	-

Gene Model

Click here to download ENSOMEG00000005176's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOMEG00000005176's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOMEG00000005176	cpsf4	100	83.886	ENSG00000160917	CPSF4	100	97.321	Homo_sapiens
ENSOMEG00000005176	cpsf4	67	83.051	ENSAPOG00000004921	cpsf4	100	83.051	Acanthochromis_polyacanthus
ENSOMEG00000005176	cpsf4	100	81.784	ENSAMEG00000006252	CPSF4	100	81.784	Ailuropoda_melanoleuca
ENSOMEG00000005176	cpsf4	100	83.396	ENSACIG00000009248	cpsf4	100	84.528	Amphilophus_citrinellus
ENSOMEG00000005176	cpsf4	100	91.698	ENSAOCG00000019616	cpsf4	100	91.698	Amphiprion_ocellaris
ENSOMEG00000005176	cpsf4	100	91.698	ENSAPEG00000011679	cpsf4	100	91.698	Amphiprion_percula
ENSOMEG00000005176	cpsf4	100	90.637	ENSATEG00000007010	cpsf4	100	90.637	Anabas_testudineus
ENSOMEG00000005176	cpsf4	100	80.669	ENSACAG00000012941	CPSF4	89	80.669	Anolis_carolinensis
ENSOMEG00000005176	cpsf4	100	83.886	ENSANAG00000021360	CPSF4	100	83.886	Aotus_nancymaae
ENSOMEG00000005176	cpsf4	100	92.075	ENSACLG00000010374	cpsf4	100	92.075	Astatotilapia_calliptera
ENSOMEG00000005176	cpsf4	100	85.096	ENSAMXG00000031647	cpsf4	100	87.500	Astyanax_mexicanus
ENSOMEG00000005176	cpsf4	100	76.226	ENSBTAG00000002090	CPSF4	100	78.491	Bos_taurus
ENSOMEG00000005176	cpsf4	100	83.886	ENSCJAG00000015826	CPSF4	100	83.886	Callithrix_jacchus
ENSOMEG00000005176	cpsf4	100	83.019	ENSCAFG00000015036	CPSF4	99	86.667	Canis_familiaris
ENSOMEG00000005176	cpsf4	100	78.199	ENSCAFG00020014462	CPSF4	100	78.199	Canis_lupus_dingo
ENSOMEG00000005176	cpsf4	100	83.412	ENSCHIG00000014313	CPSF4	100	83.412	Capra_hircus
ENSOMEG00000005176	cpsf4	100	84.360	ENSTSYG00000005712	-	100	84.360	Carlito_syrichta
ENSOMEG00000005176	cpsf4	89	73.418	ENSTSYG00000008195	-	100	75.691	Carlito_syrichta
ENSOMEG00000005176	cpsf4	100	74.648	ENSTSYG00000014604	-	100	74.648	Carlito_syrichta
ENSOMEG00000005176	cpsf4	82	80.909	ENSCAPG00000013881	CPSF4	88	80.180	Cavia_aperea
ENSOMEG00000005176	cpsf4	100	83.886	ENSCPOG00000001783	CPSF4	100	83.886	Cavia_porcellus
ENSOMEG00000005176	cpsf4	100	83.886	ENSCCAG00000028291	CPSF4	100	83.886	Cebus_capucinus
ENSOMEG00000005176	cpsf4	100	83.886	ENSCATG00000038440	CPSF4	100	83.886	Cercocebus_atys
ENSOMEG00000005176	cpsf4	100	83.886	ENSCLAG00000007050	CPSF4	100	83.886	Chinchilla_lanigera
ENSOMEG00000005176	cpsf4	100	81.784	ENSCSAG00000017795	CPSF4	100	81.784	Chlorocebus_sabaeus
ENSOMEG00000005176	cpsf4	80	81.019	ENSCPBG00000020869	CPSF4	100	81.019	Chrysemys_picta_bellii
ENSOMEG00000005176	cpsf4	63	78.916	ENSCPBG00000010269	-	100	78.916	Chrysemys_picta_bellii
ENSOMEG00000005176	cpsf4	97	55.859	ENSCING00000021080	-	97	55.859	Ciona_intestinalis
ENSOMEG00000005176	cpsf4	96	53.710	ENSCSAVG00000011469	-	97	53.710	Ciona_savignyi
ENSOMEG00000005176	cpsf4	100	83.886	ENSCANG00000019384	CPSF4	100	83.886	Colobus_angolensis_palliatus
ENSOMEG00000005176	cpsf4	100	83.886	ENSCGRG00001024184	Cpsf4	100	83.886	Cricetulus_griseus_chok1gshd
ENSOMEG00000005176	cpsf4	100	83.886	ENSCGRG00000013892	Cpsf4	100	83.886	Cricetulus_griseus_crigri
ENSOMEG00000005176	cpsf4	100	89.434	ENSCSEG00000019055	cpsf4	100	89.434	Cynoglossus_semilaevis
ENSOMEG00000005176	cpsf4	100	90.943	ENSCVAG00000016528	cpsf4	100	90.943	Cyprinodon_variegatus
ENSOMEG00000005176	cpsf4	100	83.026	ENSDARG00000020217	cpsf4	100	83.026	Danio_rerio
ENSOMEG00000005176	cpsf4	100	81.784	ENSDNOG00000006344	CPSF4	100	81.784	Dasypus_novemcinctus
ENSOMEG00000005176	cpsf4	80	81.106	ENSDORG00000000742	Cpsf4	100	81.106	Dipodomys_ordii
ENSOMEG00000005176	cpsf4	100	54.849	FBgn0015621	Clp	99	54.849	Drosophila_melanogaster
ENSOMEG00000005176	cpsf4	75	95.455	ENSETEG00000002608	CPSF4	70	95.455	Echinops_telfairi
ENSOMEG00000005176	cpsf4	99	64.639	ENSEBUG00000012552	cpsf4	98	64.639	Eptatretus_burgeri
ENSOMEG00000005176	cpsf4	100	79.245	ENSEASG00005002487	CPSF4	100	79.245	Equus_asinus_asinus
ENSOMEG00000005176	cpsf4	100	83.886	ENSECAG00000007525	CPSF4	100	83.886	Equus_caballus
ENSOMEG00000005176	cpsf4	68	92.537	ENSEEUG00000002158	CPSF4	73	92.537	Erinaceus_europaeus
ENSOMEG00000005176	cpsf4	100	83.824	ENSELUG00000011481	cpsf4	100	84.191	Esox_lucius
ENSOMEG00000005176	cpsf4	100	83.886	ENSFCAG00000015070	CPSF4	100	83.886	Felis_catus
ENSOMEG00000005176	cpsf4	100	78.491	ENSFALG00000013799	CPSF4	100	78.491	Ficedula_albicollis
ENSOMEG00000005176	cpsf4	62	55.814	ENSFALG00000012906	-	100	55.814	Ficedula_albicollis
ENSOMEG00000005176	cpsf4	88	82.703	ENSFDAG00000014092	CPSF4	100	82.703	Fukomys_damarensis
ENSOMEG00000005176	cpsf4	100	90.943	ENSFHEG00000010880	cpsf4	100	90.943	Fundulus_heteroclitus
ENSOMEG00000005176	cpsf4	100	81.985	ENSGMOG00000002330	cpsf4	100	81.985	Gadus_morhua
ENSOMEG00000005176	cpsf4	100	78.868	ENSGALG00000004714	CPSF4	100	78.868	Gallus_gallus
ENSOMEG00000005176	cpsf4	99	36.066	ENSGALG00000004441	-	98	36.066	Gallus_gallus
ENSOMEG00000005176	cpsf4	100	90.566	ENSGAFG00000010580	cpsf4	100	90.566	Gambusia_affinis
ENSOMEG00000005176	cpsf4	100	85.075	ENSGACG00000007792	cpsf4	100	85.075	Gasterosteus_aculeatus
ENSOMEG00000005176	cpsf4	69	75.824	ENSGAGG00000020579	-	100	75.824	Gopherus_agassizii
ENSOMEG00000005176	cpsf4	100	82.156	ENSGAGG00000021835	CPSF4	100	82.156	Gopherus_agassizii
ENSOMEG00000005176	cpsf4	100	83.886	ENSGGOG00000015131	CPSF4	100	83.886	Gorilla_gorilla
ENSOMEG00000005176	cpsf4	100	92.075	ENSHBUG00000013699	cpsf4	100	92.075	Haplochromis_burtoni
ENSOMEG00000005176	cpsf4	100	83.412	ENSHGLG00000017150	CPSF4	100	83.412	Heterocephalus_glaber_female
ENSOMEG00000005176	cpsf4	100	64.423	ENSHGLG00100017302	-	100	64.423	Heterocephalus_glaber_male
ENSOMEG00000005176	cpsf4	87	78.481	ENSHGLG00100009215	-	100	80.114	Heterocephalus_glaber_male
ENSOMEG00000005176	cpsf4	100	87.594	ENSHCOG00000004397	cpsf4	100	87.594	Hippocampus_comes
ENSOMEG00000005176	cpsf4	100	83.764	ENSIPUG00000017147	cpsf4	100	83.764	Ictalurus_punctatus
ENSOMEG00000005176	cpsf4	100	83.886	ENSSTOG00000001688	CPSF4	100	83.886	Ictidomys_tridecemlineatus
ENSOMEG00000005176	cpsf4	100	83.886	ENSJJAG00000019426	Cpsf4	100	83.886	Jaculus_jaculus
ENSOMEG00000005176	cpsf4	100	90.943	ENSKMAG00000015642	cpsf4	100	90.943	Kryptolebias_marmoratus
ENSOMEG00000005176	cpsf4	100	81.852	ENSLACG00000010938	CPSF4	100	81.852	Latimeria_chalumnae
ENSOMEG00000005176	cpsf4	100	59.398	ENSLACG00000018470	-	100	59.398	Latimeria_chalumnae
ENSOMEG00000005176	cpsf4	100	81.413	ENSLOCG00000004814	cpsf4	100	81.413	Lepisosteus_oculatus
ENSOMEG00000005176	cpsf4	100	81.413	ENSLAFG00000000159	CPSF4	100	82.609	Loxodonta_africana
ENSOMEG00000005176	cpsf4	100	83.886	ENSMFAG00000001462	CPSF4	100	83.886	Macaca_fascicularis
ENSOMEG00000005176	cpsf4	100	83.886	ENSMMUG00000019191	CPSF4	100	83.886	Macaca_mulatta
ENSOMEG00000005176	cpsf4	100	83.886	ENSMNEG00000032306	CPSF4	100	83.886	Macaca_nemestrina
ENSOMEG00000005176	cpsf4	100	83.886	ENSMLEG00000034721	CPSF4	100	83.886	Mandrillus_leucophaeus
ENSOMEG00000005176	cpsf4	100	89.850	ENSMAMG00000006244	cpsf4	100	89.850	Mastacembelus_armatus
ENSOMEG00000005176	cpsf4	100	92.075	ENSMZEG00005007515	cpsf4	100	92.075	Maylandia_zebra
ENSOMEG00000005176	cpsf4	87	77.056	ENSMGAG00000004235	CPSF4	100	77.056	Meleagris_gallopavo
ENSOMEG00000005176	cpsf4	100	83.886	ENSMAUG00000021253	Cpsf4	100	83.886	Mesocricetus_auratus
ENSOMEG00000005176	cpsf4	100	83.886	ENSMICG00000017429	CPSF4	100	83.886	Microcebus_murinus
ENSOMEG00000005176	cpsf4	100	83.886	ENSMOCG00000014901	Cpsf4	100	83.886	Microtus_ochrogaster
ENSOMEG00000005176	cpsf4	100	90.226	ENSMMOG00000001813	cpsf4	100	90.226	Mola_mola
ENSOMEG00000005176	cpsf4	100	82.900	ENSMODG00000001367	CPSF4	100	82.900	Monodelphis_domestica
ENSOMEG00000005176	cpsf4	100	89.474	ENSMALG00000012611	cpsf4	100	89.474	Monopterus_albus
ENSOMEG00000005176	cpsf4	100	83.886	MGP_CAROLIEiJ_G0028012	Cpsf4	100	83.886	Mus_caroli
ENSOMEG00000005176	cpsf4	100	83.886	ENSMUSG00000029625	Cpsf4	100	83.886	Mus_musculus
ENSOMEG00000005176	cpsf4	100	83.886	MGP_PahariEiJ_G0024581	Cpsf4	100	83.886	Mus_pahari
ENSOMEG00000005176	cpsf4	100	83.886	MGP_SPRETEiJ_G0029013	Cpsf4	100	83.886	Mus_spretus
ENSOMEG00000005176	cpsf4	100	81.784	ENSMPUG00000016508	CPSF4	100	81.784	Mustela_putorius_furo
ENSOMEG00000005176	cpsf4	87	78.355	ENSMLUG00000010980	CPSF4	100	77.056	Myotis_lucifugus
ENSOMEG00000005176	cpsf4	100	83.886	ENSNGAG00000001567	Cpsf4	100	83.886	Nannospalax_galili
ENSOMEG00000005176	cpsf4	91	90.871	ENSNBRG00000003943	cpsf4	98	90.871	Neolamprologus_brichardi
ENSOMEG00000005176	cpsf4	100	83.886	ENSNLEG00000011074	CPSF4	100	83.886	Nomascus_leucogenys
ENSOMEG00000005176	cpsf4	100	82.900	ENSMEUG00000006955	CPSF4	100	82.900	Notamacropus_eugenii
ENSOMEG00000005176	cpsf4	100	81.413	ENSOPRG00000013663	CPSF4	100	81.413	Ochotona_princeps
ENSOMEG00000005176	cpsf4	98	67.433	ENSODEG00000018283	-	91	67.433	Octodon_degus
ENSOMEG00000005176	cpsf4	100	62.868	ENSODEG00000009779	-	100	62.868	Octodon_degus
ENSOMEG00000005176	cpsf4	100	83.886	ENSODEG00000011181	-	100	83.886	Octodon_degus
ENSOMEG00000005176	cpsf4	100	91.698	ENSONIG00000008495	cpsf4	100	91.698	Oreochromis_niloticus
ENSOMEG00000005176	cpsf4	87	80.252	ENSOANG00000007729	CPSF4	100	80.252	Ornithorhynchus_anatinus
ENSOMEG00000005176	cpsf4	100	52.518	ENSOANG00000009568	-	100	52.518	Ornithorhynchus_anatinus
ENSOMEG00000005176	cpsf4	100	81.413	ENSOCUG00000002437	CPSF4	70	81.413	Oryctolagus_cuniculus
ENSOMEG00000005176	cpsf4	100	97.358	ENSORLG00000022798	cpsf4	100	97.358	Oryzias_latipes
ENSOMEG00000005176	cpsf4	100	97.358	ENSORLG00020008548	cpsf4	100	97.358	Oryzias_latipes_hni
ENSOMEG00000005176	cpsf4	100	96.981	ENSORLG00015019575	cpsf4	100	96.981	Oryzias_latipes_hsok
ENSOMEG00000005176	cpsf4	100	81.784	ENSOGAG00000010884	CPSF4	100	81.784	Otolemur_garnettii
ENSOMEG00000005176	cpsf4	100	71.795	ENSOARG00000018668	CPSF4	100	71.795	Ovis_aries
ENSOMEG00000005176	cpsf4	100	83.886	ENSPPAG00000043355	CPSF4	100	83.886	Pan_paniscus
ENSOMEG00000005176	cpsf4	100	83.886	ENSPPRG00000003134	CPSF4	100	83.886	Panthera_pardus
ENSOMEG00000005176	cpsf4	90	81.405	ENSPTIG00000005604	CPSF4	90	81.405	Panthera_tigris_altaica
ENSOMEG00000005176	cpsf4	100	83.886	ENSPTRG00000019453	CPSF4	100	83.886	Pan_troglodytes
ENSOMEG00000005176	cpsf4	100	83.886	ENSPANG00000023123	CPSF4	100	83.886	Papio_anubis
ENSOMEG00000005176	cpsf4	100	82.117	ENSPKIG00000014278	cpsf4	100	82.117	Paramormyrops_kingsleyae
ENSOMEG00000005176	cpsf4	81	58.411	ENSPSIG00000018198	-	100	58.411	Pelodiscus_sinensis
ENSOMEG00000005176	cpsf4	80	80.556	ENSPSIG00000011229	CPSF4	100	80.556	Pelodiscus_sinensis
ENSOMEG00000005176	cpsf4	100	78.868	ENSPMGG00000017735	cpsf4	100	78.868	Periophthalmus_magnuspinnatus
ENSOMEG00000005176	cpsf4	100	83.886	ENSPEMG00000004508	Cpsf4	100	83.886	Peromyscus_maniculatus_bairdii
ENSOMEG00000005176	cpsf4	100	82.900	ENSPCIG00000024776	CPSF4	100	82.900	Phascolarctos_cinereus
ENSOMEG00000005176	cpsf4	100	90.566	ENSPFOG00000014912	cpsf4	100	90.566	Poecilia_formosa
ENSOMEG00000005176	cpsf4	100	83.396	ENSPLAG00000009599	cpsf4	100	83.396	Poecilia_latipinna
ENSOMEG00000005176	cpsf4	100	90.566	ENSPMEG00000009790	cpsf4	100	90.566	Poecilia_mexicana
ENSOMEG00000005176	cpsf4	100	89.811	ENSPREG00000018166	cpsf4	100	89.811	Poecilia_reticulata
ENSOMEG00000005176	cpsf4	87	80.342	ENSPPYG00000017378	CPSF4	100	80.342	Pongo_abelii
ENSOMEG00000005176	cpsf4	100	81.413	ENSPCAG00000001892	CPSF4	100	81.413	Procavia_capensis
ENSOMEG00000005176	cpsf4	100	83.886	ENSPCOG00000012771	CPSF4	100	83.886	Propithecus_coquereli
ENSOMEG00000005176	cpsf4	100	76.952	ENSPVAG00000007531	CPSF4	100	76.952	Pteropus_vampyrus
ENSOMEG00000005176	cpsf4	100	92.075	ENSPNYG00000018559	cpsf4	100	92.075	Pundamilia_nyererei
ENSOMEG00000005176	cpsf4	100	84.074	ENSPNAG00000003736	cpsf4	100	84.074	Pygocentrus_nattereri
ENSOMEG00000005176	cpsf4	100	83.886	ENSRNOG00000000985	Cpsf4	100	83.886	Rattus_norvegicus
ENSOMEG00000005176	cpsf4	87	80.769	ENSRBIG00000033886	CPSF4	100	82.955	Rhinopithecus_bieti
ENSOMEG00000005176	cpsf4	100	83.886	ENSRROG00000040431	CPSF4	100	83.886	Rhinopithecus_roxellana
ENSOMEG00000005176	cpsf4	100	83.886	ENSSBOG00000020493	CPSF4	100	83.886	Saimiri_boliviensis_boliviensis
ENSOMEG00000005176	cpsf4	100	82.900	ENSSHAG00000011533	CPSF4	100	82.900	Sarcophilus_harrisii
ENSOMEG00000005176	cpsf4	100	80.435	ENSSFOG00015007883	cpsf4	100	80.435	Scleropages_formosus
ENSOMEG00000005176	cpsf4	100	82.707	ENSSMAG00000006374	cpsf4	100	82.707	Scophthalmus_maximus
ENSOMEG00000005176	cpsf4	100	90.977	ENSSDUG00000018887	cpsf4	100	90.977	Seriola_dumerili
ENSOMEG00000005176	cpsf4	100	90.977	ENSSLDG00000019078	cpsf4	100	90.977	Seriola_lalandi_dorsalis
ENSOMEG00000005176	cpsf4	87	80.769	ENSSARG00000012416	CPSF4	100	80.769	Sorex_araneus
ENSOMEG00000005176	cpsf4	100	80.952	ENSSPUG00000003549	CPSF4	100	80.952	Sphenodon_punctatus
ENSOMEG00000005176	cpsf4	96	59.843	ENSSPUG00000014803	-	97	59.843	Sphenodon_punctatus
ENSOMEG00000005176	cpsf4	100	85.283	ENSSPAG00000006174	cpsf4	100	85.283	Stegastes_partitus
ENSOMEG00000005176	cpsf4	100	79.245	ENSSSCG00000026896	CPSF4	100	79.245	Sus_scrofa
ENSOMEG00000005176	cpsf4	100	77.528	ENSTGUG00000007552	CPSF4	100	77.528	Taeniopygia_guttata
ENSOMEG00000005176	cpsf4	100	88.346	ENSTRUG00000024220	cpsf4	100	88.346	Takifugu_rubripes
ENSOMEG00000005176	cpsf4	100	87.925	ENSTNIG00000006265	cpsf4	100	88.679	Tetraodon_nigroviridis
ENSOMEG00000005176	cpsf4	87	71.795	ENSTBEG00000011406	CPSF4	100	71.795	Tupaia_belangeri
ENSOMEG00000005176	cpsf4	80	95.455	ENSTTRG00000003007	CPSF4	100	71.747	Tursiops_truncatus
ENSOMEG00000005176	cpsf4	94	73.387	ENSUAMG00000008051	CPSF4	85	77.366	Ursus_americanus
ENSOMEG00000005176	cpsf4	100	80.000	ENSUMAG00000009474	CPSF4	100	78.868	Ursus_maritimus
ENSOMEG00000005176	cpsf4	100	77.736	ENSVVUG00000008824	CPSF4	100	79.245	Vulpes_vulpes
ENSOMEG00000005176	cpsf4	100	77.419	ENSXETG00000009892	cpsf4	100	77.419	Xenopus_tropicalis
ENSOMEG00000005176	cpsf4	99	57.554	ENSXETG00000004641	cpsf4l	99	57.554	Xenopus_tropicalis
ENSOMEG00000005176	cpsf4	100	90.189	ENSXCOG00000016040	cpsf4	100	90.189	Xiphophorus_couchianus
ENSOMEG00000005176	cpsf4	100	90.566	ENSXMAG00000024670	cpsf4	100	90.566	Xiphophorus_maculatus