EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSOMEG00000005210 (Gene tree)
Gene ID: 112155921
Gene Symbol: sf1
Alias: -
Full Name: splicing factor 1
Gene Type: protein_coding
Species: Oryzias_melastigma
Status: putative
Strand: Plus strand
Length: 20534 bases
Position: chrNVQA01000020.1:618712-639245
Accession: 112155921
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOMEP00000004270	KH_1	PF00013.29	3.2e-06	1	1
ENSOMEP00000004270	zf-CCHC	PF00098.23	0.00056	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOMET00000009445	-	5969	-	ENSOMEP00000004270	670 (aa)	XP_024143730	UPI000CF7EBFD

Gene Model

Click here to download ENSOMEG00000005210's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOMEG00000005210's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOMEG00000005210	sf1	97	88.619	ENSAPOG00000012341	sf1	97	89.378	Acanthochromis_polyacanthus
ENSOMEG00000005210	sf1	97	89.210	ENSAOCG00000010934	sf1	97	89.514	Amphiprion_ocellaris
ENSOMEG00000005210	sf1	97	89.210	ENSAPEG00000009498	sf1	97	89.514	Amphiprion_percula
ENSOMEG00000005210	sf1	67	89.035	ENSATEG00000001894	sf1	97	89.666	Anabas_testudineus
ENSOMEG00000005210	sf1	85	65.404	ENSANAG00000022607	-	89	73.280	Aotus_nancymaae
ENSOMEG00000005210	sf1	60	77.990	ENSANAG00000026664	-	91	80.256	Aotus_nancymaae
ENSOMEG00000005210	sf1	97	81.611	ENSACLG00000007633	sf1	97	86.322	Astatotilapia_calliptera
ENSOMEG00000005210	sf1	69	83.333	ENSAMXG00000003630	sf1	61	83.333	Astyanax_mexicanus
ENSOMEG00000005210	sf1	60	77.458	ENSBTAG00000001035	SF1	63	80.051	Bos_taurus
ENSOMEG00000005210	sf1	60	77.698	ENSCJAG00000002780	SF1	75	67.954	Callithrix_jacchus
ENSOMEG00000005210	sf1	61	76.056	ENSCAFG00000014239	SF1	60	79.795	Canis_familiaris
ENSOMEG00000005210	sf1	60	77.458	ENSCAFG00020014381	SF1	60	80.051	Canis_lupus_dingo
ENSOMEG00000005210	sf1	60	77.458	ENSCHIG00000025867	SF1	60	80.051	Capra_hircus
ENSOMEG00000005210	sf1	59	77.966	ENSCAPG00000010762	SF1	66	82.011	Cavia_aperea
ENSOMEG00000005210	sf1	60	77.698	ENSCPOG00000012290	SF1	59	81.746	Cavia_porcellus
ENSOMEG00000005210	sf1	58	72.111	ENSCCAG00000023781	-	83	72.178	Cebus_capucinus
ENSOMEG00000005210	sf1	60	77.698	ENSCCAG00000037881	SF1	91	80.256	Cebus_capucinus
ENSOMEG00000005210	sf1	60	77.458	ENSCATG00000011564	SF1	91	80.256	Cercocebus_atys
ENSOMEG00000005210	sf1	57	72.362	ENSCHOG00000006008	SF1	79	66.744	Choloepus_hoffmanni
ENSOMEG00000005210	sf1	63	81.075	ENSCPBG00000023763	SF1	52	80.988	Chrysemys_picta_bellii
ENSOMEG00000005210	sf1	60	56.667	ENSCING00000005564	-	92	54.762	Ciona_intestinalis
ENSOMEG00000005210	sf1	51	57.263	ENSCSAVG00000009055	-	72	62.418	Ciona_savignyi
ENSOMEG00000005210	sf1	60	77.458	ENSCANG00000042201	SF1	91	80.256	Colobus_angolensis_palliatus
ENSOMEG00000005210	sf1	60	77.458	ENSCGRG00001003677	Sf1	67	80.051	Cricetulus_griseus_chok1gshd
ENSOMEG00000005210	sf1	59	77.724	ENSCGRG00000001708	Sf1	66	82.011	Cricetulus_griseus_crigri
ENSOMEG00000005210	sf1	97	88.164	ENSCSEG00000014375	sf1	66	89.497	Cynoglossus_semilaevis
ENSOMEG00000005210	sf1	98	89.124	ENSCVAG00000001670	sf1	68	90.153	Cyprinodon_variegatus
ENSOMEG00000005210	sf1	86	81.629	ENSDARG00000008188	sf1	67	88.947	Danio_rerio
ENSOMEG00000005210	sf1	60	77.751	ENSDORG00000016334	Sf1	60	80.051	Dipodomys_ordii
ENSOMEG00000005210	sf1	59	71.845	ENSETEG00000012830	SF1	51	74.799	Echinops_telfairi
ENSOMEG00000005210	sf1	53	77.748	ENSEEUG00000001058	SF1	84	82.544	Erinaceus_europaeus
ENSOMEG00000005210	sf1	60	77.698	ENSFCAG00000012231	SF1	60	79.795	Felis_catus
ENSOMEG00000005210	sf1	59	77.966	ENSFDAG00000009833	SF1	66	82.011	Fukomys_damarensis
ENSOMEG00000005210	sf1	97	87.671	ENSFHEG00000022656	sf1	97	88.737	Fundulus_heteroclitus
ENSOMEG00000005210	sf1	71	77.963	ENSGMOG00000007469	sf1	62	91.228	Gadus_morhua
ENSOMEG00000005210	sf1	89	88.595	ENSGAFG00000019284	sf1	74	89.278	Gambusia_affinis
ENSOMEG00000005210	sf1	56	92.267	ENSGACG00000000826	sf1	66	90.551	Gasterosteus_aculeatus
ENSOMEG00000005210	sf1	63	80.841	ENSGAGG00000021691	SF1	70	71.000	Gopherus_agassizii
ENSOMEG00000005210	sf1	67	89.890	ENSHBUG00000011598	sf1	67	89.956	Haplochromis_burtoni
ENSOMEG00000005210	sf1	61	76.291	ENSHGLG00000009541	SF1	67	80.051	Heterocephalus_glaber_female
ENSOMEG00000005210	sf1	59	77.966	ENSHGLG00100013879	-	66	82.011	Heterocephalus_glaber_male
ENSOMEG00000005210	sf1	56	70.270	ENSHGLG00100008255	-	71	76.901	Heterocephalus_glaber_male
ENSOMEG00000005210	sf1	69	84.421	ENSHCOG00000011388	sf1	68	85.529	Hippocampus_comes
ENSOMEG00000005210	sf1	56	71.094	ENSSTOG00000024353	-	69	71.282	Ictidomys_tridecemlineatus
ENSOMEG00000005210	sf1	59	77.966	ENSSTOG00000009790	-	59	82.011	Ictidomys_tridecemlineatus
ENSOMEG00000005210	sf1	60	77.458	ENSJJAG00000011788	Sf1	60	79.795	Jaculus_jaculus
ENSOMEG00000005210	sf1	84	89.437	ENSKMAG00000005854	sf1	87	89.437	Kryptolebias_marmoratus
ENSOMEG00000005210	sf1	97	77.542	ENSLBEG00000019836	sf1	74	88.983	Labrus_bergylta
ENSOMEG00000005210	sf1	67	79.832	ENSLOCG00000002130	sf1	67	80.085	Lepisosteus_oculatus
ENSOMEG00000005210	sf1	60	80.145	ENSLAFG00000007201	SF1	63	83.069	Loxodonta_africana
ENSOMEG00000005210	sf1	60	77.458	ENSMFAG00000033122	SF1	91	80.256	Macaca_fascicularis
ENSOMEG00000005210	sf1	60	77.698	ENSMMUG00000022606	SF1	91	81.414	Macaca_mulatta
ENSOMEG00000005210	sf1	60	77.458	ENSMNEG00000037901	SF1	91	80.256	Macaca_nemestrina
ENSOMEG00000005210	sf1	64	73.661	ENSMLEG00000040706	SF1	89	82.228	Mandrillus_leucophaeus
ENSOMEG00000005210	sf1	67	91.009	ENSMAMG00000001780	sf1	97	90.606	Mastacembelus_armatus
ENSOMEG00000005210	sf1	67	89.890	ENSMZEG00005009196	sf1	67	89.956	Maylandia_zebra
ENSOMEG00000005210	sf1	61	75.587	ENSMAUG00000014064	Sf1	67	80.051	Mesocricetus_auratus
ENSOMEG00000005210	sf1	60	77.698	ENSMICG00000001202	SF1	91	80.051	Microcebus_murinus
ENSOMEG00000005210	sf1	61	76.056	ENSMOCG00000022038	Sf1	67	80.307	Microtus_ochrogaster
ENSOMEG00000005210	sf1	86	83.737	ENSMMOG00000020474	sf1	84	86.396	Mola_mola
ENSOMEG00000005210	sf1	60	77.273	ENSMODG00000029407	SF1	81	81.414	Monodelphis_domestica
ENSOMEG00000005210	sf1	84	83.865	ENSMALG00000020521	sf1	92	85.816	Monopterus_albus
ENSOMEG00000005210	sf1	61	75.587	MGP_CAROLIEiJ_G0022607	Sf1	99	94.737	Mus_caroli
ENSOMEG00000005210	sf1	61	75.587	ENSMUSG00000024949	Sf1	99	94.737	Mus_musculus
ENSOMEG00000005210	sf1	61	75.587	MGP_PahariEiJ_G0014101	Sf1	99	94.737	Mus_pahari
ENSOMEG00000005210	sf1	61	75.587	MGP_SPRETEiJ_G0023518	Sf1	99	94.737	Mus_spretus
ENSOMEG00000005210	sf1	60	77.458	ENSMPUG00000012684	SF1	58	81.675	Mustela_putorius_furo
ENSOMEG00000005210	sf1	64	72.829	ENSMLUG00000029800	-	66	76.982	Myotis_lucifugus
ENSOMEG00000005210	sf1	60	77.458	ENSMLUG00000015217	-	58	81.937	Myotis_lucifugus
ENSOMEG00000005210	sf1	61	76.056	ENSNGAG00000005550	Sf1	67	79.795	Nannospalax_galili
ENSOMEG00000005210	sf1	60	77.698	ENSNLEG00000005236	-	91	80.256	Nomascus_leucogenys
ENSOMEG00000005210	sf1	59	75.714	ENSMEUG00000013424	SF1	69	81.333	Notamacropus_eugenii
ENSOMEG00000005210	sf1	74	69.790	ENSODEG00000006102	-	61	77.494	Octodon_degus
ENSOMEG00000005210	sf1	67	90.110	ENSONIG00000015728	sf1	67	90.175	Oreochromis_niloticus
ENSOMEG00000005210	sf1	50	73.143	ENSOANG00000002909	SF1	77	76.266	Ornithorhynchus_anatinus
ENSOMEG00000005210	sf1	60	77.458	ENSOCUG00000026486	SF1	59	81.414	Oryctolagus_cuniculus
ENSOMEG00000005210	sf1	69	94.565	ENSORLG00000011853	sf1	67	94.690	Oryzias_latipes
ENSOMEG00000005210	sf1	69	94.565	ENSORLG00020011834	sf1	67	94.690	Oryzias_latipes_hni
ENSOMEG00000005210	sf1	100	92.805	ENSORLG00015012855	sf1	100	92.805	Oryzias_latipes_hsok
ENSOMEG00000005210	sf1	61	76.056	ENSOGAG00000016196	SF1	60	79.795	Otolemur_garnettii
ENSOMEG00000005210	sf1	61	76.291	ENSOARG00000009166	SF1	67	79.795	Ovis_aries
ENSOMEG00000005210	sf1	60	79.036	ENSPPAG00000002799	-	91	81.890	Pan_paniscus
ENSOMEG00000005210	sf1	60	77.698	ENSPPRG00000013566	SF1	58	82.740	Panthera_pardus
ENSOMEG00000005210	sf1	60	77.698	ENSPTIG00000016141	SF1	67	81.675	Panthera_tigris_altaica
ENSOMEG00000005210	sf1	62	76.498	ENSPTRG00000003846	SF1	91	80.256	Pan_troglodytes
ENSOMEG00000005210	sf1	61	76.291	ENSPANG00000020754	SF1	91	80.256	Papio_anubis
ENSOMEG00000005210	sf1	60	76.794	ENSPEMG00000010463	Sf1	67	80.051	Peromyscus_maniculatus_bairdii
ENSOMEG00000005210	sf1	60	77.218	ENSPCIG00000018173	SF1	62	79.795	Phascolarctos_cinereus
ENSOMEG00000005210	sf1	97	89.514	ENSPFOG00000013683	sf1	68	90.153	Poecilia_formosa
ENSOMEG00000005210	sf1	90	89.216	ENSPLAG00000018076	sf1	63	90.024	Poecilia_latipinna
ENSOMEG00000005210	sf1	97	89.514	ENSPMEG00000005726	sf1	68	90.153	Poecilia_mexicana
ENSOMEG00000005210	sf1	97	89.362	ENSPREG00000004155	sf1	68	89.278	Poecilia_reticulata
ENSOMEG00000005210	sf1	61	76.291	ENSPPYG00000003098	-	72	79.795	Pongo_abelii
ENSOMEG00000005210	sf1	60	77.458	ENSPCOG00000027546	SF1	91	80.051	Propithecus_coquereli
ENSOMEG00000005210	sf1	67	90.549	ENSPNYG00000004673	sf1	67	89.956	Pundamilia_nyererei
ENSOMEG00000005210	sf1	67	84.257	ENSPNAG00000013072	sf1	69	83.298	Pygocentrus_nattereri
ENSOMEG00000005210	sf1	61	75.587	ENSRNOG00000021085	Sf1	60	80.051	Rattus_norvegicus
ENSOMEG00000005210	sf1	60	77.458	ENSRBIG00000042818	SF1	91	80.256	Rhinopithecus_bieti
ENSOMEG00000005210	sf1	61	76.761	ENSRROG00000045655	SF1	89	82.228	Rhinopithecus_roxellana
ENSOMEG00000005210	sf1	61	36.659	YLR116W	MSL5	69	39.276	Saccharomyces_cerevisiae
ENSOMEG00000005210	sf1	81	65.068	ENSSBOG00000022267	-	91	65.641	Saimiri_boliviensis_boliviensis
ENSOMEG00000005210	sf1	72	70.791	ENSSHAG00000006841	SF1	71	82.338	Sarcophilus_harrisii
ENSOMEG00000005210	sf1	70	80.376	ENSSFOG00015021978	sf1	68	80.255	Scleropages_formosus
ENSOMEG00000005210	sf1	84	85.026	ENSSMAG00000007549	sf1	71	87.013	Scophthalmus_maximus
ENSOMEG00000005210	sf1	67	90.591	ENSSDUG00000003903	sf1	72	90.063	Seriola_dumerili
ENSOMEG00000005210	sf1	67	90.372	ENSSLDG00000013075	sf1	97	87.897	Seriola_lalandi_dorsalis
ENSOMEG00000005210	sf1	59	73.366	ENSSARG00000008180	SF1	71	77.249	Sorex_araneus
ENSOMEG00000005210	sf1	60	78.555	ENSSPUG00000012907	SF1	59	85.754	Sphenodon_punctatus
ENSOMEG00000005210	sf1	97	89.666	ENSSPAG00000019060	sf1	97	89.970	Stegastes_partitus
ENSOMEG00000005210	sf1	60	77.218	ENSSSCG00000013021	SF1	60	80.307	Sus_scrofa
ENSOMEG00000005210	sf1	74	69.888	ENSTNIG00000004820	sf1	74	74.500	Tetraodon_nigroviridis
ENSOMEG00000005210	sf1	59	73.020	ENSTBEG00000013133	SF1	54	75.134	Tupaia_belangeri
ENSOMEG00000005210	sf1	60	80.000	ENSUMAG00000007268	SF1	72	80.307	Ursus_maritimus
ENSOMEG00000005210	sf1	85	73.459	ENSXETG00000008434	sf1	64	84.533	Xenopus_tropicalis
ENSOMEG00000005210	sf1	73	87.674	ENSXCOG00000003704	sf1	70	91.935	Xiphophorus_couchianus
ENSOMEG00000005210	sf1	97	89.666	ENSXMAG00000007822	sf1	70	89.716	Xiphophorus_maculatus