EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSOMEG00000006001 (Gene tree)
Gene ID: 112159034
Gene Symbol: srsf6a
Alias: -
Full Name: serine/arginine-rich splicing factor 6a
Gene Type: protein_coding
Species: Oryzias_melastigma
Status: putative
Strand: Minus strand
Length: 3752 bases
Position: chrNVQA01000024.1:8860423-8864174
Accession: ZDB-GENE-040426-2824
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOMEP00000005008	RRM_1	PF00076.22	6.7e-31	1	2
ENSOMEP00000005008	RRM_1	PF00076.22	6.7e-31	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOMET00000008204	-	1029	-	ENSOMEP00000005008	342 (aa)	-	-

Gene Model

Click here to download ENSOMEG00000006001's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOMEG00000006001's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSOMEG00000006001	srsf6a	55	52.830	ENSOMEG00000000628	srsf5a	67	54.396
ENSOMEG00000006001	srsf6a	68	42.857	ENSOMEG00000005541	srsf4	51	68.362
ENSOMEG00000006001	srsf6a	52	37.619	ENSOMEG00000017711	-	76	34.975

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOMEG00000006001	srsf6a	61	63.559	ENSACIG00000020091	-	95	67.717	Amphilophus_citrinellus
ENSOMEG00000006001	srsf6a	92	57.895	ENSACIG00000023658	-	56	75.556	Amphilophus_citrinellus
ENSOMEG00000006001	srsf6a	64	66.816	ENSAPEG00000013086	-	53	75.269	Amphiprion_percula
ENSOMEG00000006001	srsf6a	51	67.961	ENSELUG00000013506	SRSF6	94	55.942	Esox_lucius
ENSOMEG00000006001	srsf6a	93	64.211	ENSGACG00000006084	srsf6a	53	72.581	Gasterosteus_aculeatus
ENSOMEG00000006001	srsf6a	67	62.151	ENSHBUG00000006386	-	58	74.444	Haplochromis_burtoni
ENSOMEG00000006001	srsf6a	50	74.742	ENSHCOG00000002740	srsf6a	57	75.419	Hippocampus_comes
ENSOMEG00000006001	srsf6a	93	76.364	ENSKMAG00000011934	srsf6a	59	81.765	Kryptolebias_marmoratus
ENSOMEG00000006001	srsf6a	92	63.429	ENSLBEG00000007356	srsf6a	52	74.194	Labrus_bergylta
ENSOMEG00000006001	srsf6a	69	58.117	ENSLACG00000005466	SRSF6	67	63.556	Latimeria_chalumnae
ENSOMEG00000006001	srsf6a	52	70.918	ENSMZEG00005020658	-	60	76.301	Maylandia_zebra
ENSOMEG00000006001	srsf6a	60	71.806	ENSMZEG00005008032	-	57	74.444	Maylandia_zebra
ENSOMEG00000006001	srsf6a	64	88.485	ENSMALG00000003702	srsf6a	58	87.975	Monopterus_albus
ENSOMEG00000006001	srsf6a	67	60.956	ENSNBRG00000014709	-	58	74.444	Neolamprologus_brichardi
ENSOMEG00000006001	srsf6a	93	62.931	ENSONIG00000001925	-	52	75.269	Oreochromis_niloticus
ENSOMEG00000006001	srsf6a	90	71.865	ENSPKIG00000018463	-	62	87.302	Paramormyrops_kingsleyae
ENSOMEG00000006001	srsf6a	55	55.349	ENSPKIG00000015703	-	86	60.000	Paramormyrops_kingsleyae
ENSOMEG00000006001	srsf6a	94	56.461	ENSPLAG00000009243	srsf6a	79	68.254	Poecilia_latipinna
ENSOMEG00000006001	srsf6a	62	75.543	ENSPMEG00000006042	SRSF6	54	75.135	Poecilia_mexicana
ENSOMEG00000006001	srsf6a	67	60.956	ENSPNYG00000004944	-	58	74.444	Pundamilia_nyererei
ENSOMEG00000006001	srsf6a	57	76.923	ENSSFOG00015015169	SRSF6	60	75.956	Scleropages_formosus
ENSOMEG00000006001	srsf6a	100	65.183	ENSSFOG00015019681	-	53	72.021	Scleropages_formosus
ENSOMEG00000006001	srsf6a	66	75.135	ENSSDUG00000016097	srsf6a	53	74.731	Seriola_dumerili
ENSOMEG00000006001	srsf6a	62	75.439	ENSSLDG00000022841	srsf6a	50	87.898	Seriola_lalandi_dorsalis
ENSOMEG00000006001	srsf6a	78	74.074	ENSSPAG00000002362	srsf6a	86	74.074	Stegastes_partitus
ENSOMEG00000006001	srsf6a	63	60.331	ENSSSCG00000007362	SRSF6	53	72.826	Sus_scrofa
ENSOMEG00000006001	srsf6a	94	59.710	ENSXMAG00000021849	srsf6a	55	75.824	Xiphophorus_maculatus