EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSOMEG00000006181 (Gene tree)
Gene ID: 112160868
Gene Symbol: ddb1
Alias: -
Full Name: damage-specific DNA binding protein 1
Gene Type: protein_coding
Species: Oryzias_melastigma
Status: putative
Strand: Minus strand
Length: 53817 bases
Position: chrNVQA01000027.1:27859850-27913666
Accession: ZDB-GENE-040426-1272
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOMEP00000005155	CPSF_A	PF03178.15	3.4e-76	1	1
ENSOMEP00000025088	CPSF_A	PF03178.15	9.6e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOMET00000008017	-	2604	-	ENSOMEP00000025088	867 (aa)	-	-
ENSOMET00000007951	-	3947	-	ENSOMEP00000005155	1105 (aa)	-	-

Gene Model

Click here to download ENSOMEG00000006181's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOMEG00000006181's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOMEG00000006181	ddb1	99	89.699	ENSG00000167986	DDB1	100	94.521	Homo_sapiens
ENSOMEG00000006181	ddb1	99	96.171	ENSAPOG00000005036	ddb1	99	98.163	Acanthochromis_polyacanthus
ENSOMEG00000006181	ddb1	99	89.790	ENSAMEG00000016518	DDB1	96	89.790	Ailuropoda_melanoleuca
ENSOMEG00000006181	ddb1	99	92.601	ENSACIG00000020624	ddb1	99	98.265	Amphilophus_citrinellus
ENSOMEG00000006181	ddb1	99	95.898	ENSAOCG00000003066	ddb1	96	95.898	Amphiprion_ocellaris
ENSOMEG00000006181	ddb1	97	97.953	ENSAPEG00000000092	ddb1	99	97.953	Amphiprion_percula
ENSOMEG00000006181	ddb1	97	98.231	ENSATEG00000020571	ddb1	97	98.231	Anabas_testudineus
ENSOMEG00000006181	ddb1	96	90.557	ENSAPLG00000007174	DDB1	93	90.557	Anas_platyrhynchos
ENSOMEG00000006181	ddb1	99	89.152	ENSACAG00000017758	DDB1	96	89.152	Anolis_carolinensis
ENSOMEG00000006181	ddb1	99	89.699	ENSANAG00000021878	DDB1	96	89.699	Aotus_nancymaae
ENSOMEG00000006181	ddb1	99	95.989	ENSACLG00000012401	ddb1	99	97.427	Astatotilapia_calliptera
ENSOMEG00000006181	ddb1	99	89.699	ENSBTAG00000021569	DDB1	90	89.699	Bos_taurus
ENSOMEG00000006181	ddb1	99	35.714	WBGene00010890	ddb-1	94	37.205	Caenorhabditis_elegans
ENSOMEG00000006181	ddb1	99	89.699	ENSCJAG00000019319	DDB1	96	89.699	Callithrix_jacchus
ENSOMEG00000006181	ddb1	99	89.790	ENSCAFG00000016264	DDB1	99	91.713	Canis_familiaris
ENSOMEG00000006181	ddb1	97	91.713	ENSCAFG00020012722	DDB1	99	91.713	Canis_lupus_dingo
ENSOMEG00000006181	ddb1	99	89.699	ENSCHIG00000014969	DDB1	96	89.699	Capra_hircus
ENSOMEG00000006181	ddb1	99	89.426	ENSTSYG00000008027	DDB1	96	89.426	Carlito_syrichta
ENSOMEG00000006181	ddb1	97	89.498	ENSCAPG00000010786	DDB1	96	89.498	Cavia_aperea
ENSOMEG00000006181	ddb1	99	89.517	ENSCPOG00000009956	DDB1	96	89.517	Cavia_porcellus
ENSOMEG00000006181	ddb1	99	89.699	ENSCCAG00000035883	DDB1	96	89.699	Cebus_capucinus
ENSOMEG00000006181	ddb1	97	89.454	ENSCATG00000044495	DDB1	94	89.454	Cercocebus_atys
ENSOMEG00000006181	ddb1	99	89.699	ENSCLAG00000004126	DDB1	96	89.699	Chinchilla_lanigera
ENSOMEG00000006181	ddb1	99	89.699	ENSCSAG00000006392	DDB1	96	89.699	Chlorocebus_sabaeus
ENSOMEG00000006181	ddb1	86	85.574	ENSCHOG00000011377	DDB1	88	81.055	Choloepus_hoffmanni
ENSOMEG00000006181	ddb1	99	89.426	ENSCPBG00000017728	DDB1	96	89.426	Chrysemys_picta_bellii
ENSOMEG00000006181	ddb1	99	60.325	ENSCING00000007437	-	96	60.325	Ciona_intestinalis
ENSOMEG00000006181	ddb1	93	59.480	ENSCSAVG00000004783	-	100	60.404	Ciona_savignyi
ENSOMEG00000006181	ddb1	99	89.699	ENSCANG00000019948	DDB1	96	89.699	Colobus_angolensis_palliatus
ENSOMEG00000006181	ddb1	99	89.790	ENSCGRG00001016599	Ddb1	98	90.578	Cricetulus_griseus_chok1gshd
ENSOMEG00000006181	ddb1	99	89.790	ENSCGRG00000013427	Ddb1	96	89.790	Cricetulus_griseus_crigri
ENSOMEG00000006181	ddb1	96	97.361	ENSCSEG00000012499	ddb1	99	95.648	Cynoglossus_semilaevis
ENSOMEG00000006181	ddb1	97	97.581	ENSCVAG00000019531	ddb1	99	97.581	Cyprinodon_variegatus
ENSOMEG00000006181	ddb1	97	92.351	ENSDARG00000074431	ddb1	94	92.351	Danio_rerio
ENSOMEG00000006181	ddb1	97	91.713	ENSDNOG00000014884	DDB1	97	91.713	Dasypus_novemcinctus
ENSOMEG00000006181	ddb1	82	93.636	ENSDORG00000000127	Ddb1	95	93.636	Dipodomys_ordii
ENSOMEG00000006181	ddb1	99	59.982	FBgn0260962	pic	96	59.982	Drosophila_melanogaster
ENSOMEG00000006181	ddb1	74	30.065	FBgn0024698	Cpsf160	63	30.065	Drosophila_melanogaster
ENSOMEG00000006181	ddb1	66	93.701	ENSETEG00000001053	-	64	93.701	Echinops_telfairi
ENSOMEG00000006181	ddb1	99	79.148	ENSEBUG00000014593	ddb1	97	84.027	Eptatretus_burgeri
ENSOMEG00000006181	ddb1	99	89.790	ENSEASG00005008184	DDB1	96	89.790	Equus_asinus_asinus
ENSOMEG00000006181	ddb1	99	89.881	ENSECAG00000012136	DDB1	96	89.881	Equus_caballus
ENSOMEG00000006181	ddb1	88	87.710	ENSEEUG00000003194	DDB1	85	87.710	Erinaceus_europaeus
ENSOMEG00000006181	ddb1	99	94.531	ENSELUG00000023868	ddb1	96	94.531	Esox_lucius
ENSOMEG00000006181	ddb1	99	89.790	ENSFCAG00000029716	DDB1	96	89.790	Felis_catus
ENSOMEG00000006181	ddb1	97	91.341	ENSFALG00000011981	DDB1	94	91.341	Ficedula_albicollis
ENSOMEG00000006181	ddb1	99	89.699	ENSFDAG00000005128	DDB1	96	89.699	Fukomys_damarensis
ENSOMEG00000006181	ddb1	87	97.826	ENSFHEG00000022133	ddb1	93	97.826	Fundulus_heteroclitus
ENSOMEG00000006181	ddb1	81	97.993	ENSGMOG00000019386	ddb1	94	97.993	Gadus_morhua
ENSOMEG00000006181	ddb1	99	89.517	ENSGALG00000042333	DDB1	96	89.517	Gallus_gallus
ENSOMEG00000006181	ddb1	97	97.860	ENSGAFG00000013142	ddb1	99	97.860	Gambusia_affinis
ENSOMEG00000006181	ddb1	97	97.570	ENSGACG00000017182	ddb1	98	97.570	Gasterosteus_aculeatus
ENSOMEG00000006181	ddb1	94	89.049	ENSGAGG00000014124	DDB1	96	89.049	Gopherus_agassizii
ENSOMEG00000006181	ddb1	99	89.699	ENSGGOG00000004052	DDB1	96	89.699	Gorilla_gorilla
ENSOMEG00000006181	ddb1	99	95.989	ENSHBUG00000008873	ddb1	96	95.989	Haplochromis_burtoni
ENSOMEG00000006181	ddb1	99	89.699	ENSHGLG00000018430	DDB1	96	89.699	Heterocephalus_glaber_female
ENSOMEG00000006181	ddb1	99	88.696	ENSHGLG00100014475	DDB1	96	88.696	Heterocephalus_glaber_male
ENSOMEG00000006181	ddb1	97	97.307	ENSHCOG00000018670	ddb1	99	97.307	Hippocampus_comes
ENSOMEG00000006181	ddb1	99	94.858	ENSIPUG00000005612	DDB1	99	94.858	Ictalurus_punctatus
ENSOMEG00000006181	ddb1	99	89.699	ENSSTOG00000007552	DDB1	96	89.699	Ictidomys_tridecemlineatus
ENSOMEG00000006181	ddb1	99	89.699	ENSJJAG00000017769	Ddb1	96	89.699	Jaculus_jaculus
ENSOMEG00000006181	ddb1	97	97.953	ENSKMAG00000002315	ddb1	100	97.953	Kryptolebias_marmoratus
ENSOMEG00000006181	ddb1	97	91.886	ENSLBEG00000017065	ddb1	99	98.023	Labrus_bergylta
ENSOMEG00000006181	ddb1	97	90.901	ENSLACG00000017611	DDB1	97	90.987	Latimeria_chalumnae
ENSOMEG00000006181	ddb1	91	85.601	ENSLOCG00000000012	ddb1	96	85.601	Lepisosteus_oculatus
ENSOMEG00000006181	ddb1	99	89.608	ENSLAFG00000011513	DDB1	96	89.608	Loxodonta_africana
ENSOMEG00000006181	ddb1	99	89.699	ENSMFAG00000042035	DDB1	96	89.699	Macaca_fascicularis
ENSOMEG00000006181	ddb1	99	89.699	ENSMMUG00000002691	DDB1	100	88.158	Macaca_mulatta
ENSOMEG00000006181	ddb1	99	89.699	ENSMNEG00000031559	DDB1	96	89.699	Macaca_nemestrina
ENSOMEG00000006181	ddb1	99	89.699	ENSMLEG00000044136	DDB1	98	89.899	Mandrillus_leucophaeus
ENSOMEG00000006181	ddb1	99	96.445	ENSMAMG00000014372	ddb1	96	96.445	Mastacembelus_armatus
ENSOMEG00000006181	ddb1	99	95.898	ENSMZEG00005013835	ddb1	96	95.898	Maylandia_zebra
ENSOMEG00000006181	ddb1	91	91.135	ENSMGAG00000004990	DDB1	93	91.135	Meleagris_gallopavo
ENSOMEG00000006181	ddb1	99	89.790	ENSMAUG00000012926	Ddb1	96	89.790	Mesocricetus_auratus
ENSOMEG00000006181	ddb1	99	89.881	ENSMICG00000013703	DDB1	96	89.881	Microcebus_murinus
ENSOMEG00000006181	ddb1	99	89.699	ENSMOCG00000020499	Ddb1	96	89.699	Microtus_ochrogaster
ENSOMEG00000006181	ddb1	99	92.170	ENSMMOG00000001758	ddb1	99	98.163	Mola_mola
ENSOMEG00000006181	ddb1	99	82.081	ENSMODG00000020353	DDB1	95	82.081	Monodelphis_domestica
ENSOMEG00000006181	ddb1	99	96.080	ENSMALG00000014071	ddb1	96	96.080	Monopterus_albus
ENSOMEG00000006181	ddb1	99	89.790	MGP_CAROLIEiJ_G0022695	Ddb1	96	89.790	Mus_caroli
ENSOMEG00000006181	ddb1	99	89.881	ENSMUSG00000024740	Ddb1	96	89.881	Mus_musculus
ENSOMEG00000006181	ddb1	99	89.790	MGP_PahariEiJ_G0014189	Ddb1	96	89.790	Mus_pahari
ENSOMEG00000006181	ddb1	99	89.881	MGP_SPRETEiJ_G0023609	Ddb1	96	89.881	Mus_spretus
ENSOMEG00000006181	ddb1	99	86.691	ENSMPUG00000014200	DDB1	96	86.691	Mustela_putorius_furo
ENSOMEG00000006181	ddb1	99	89.881	ENSMLUG00000013232	DDB1	96	89.881	Myotis_lucifugus
ENSOMEG00000006181	ddb1	99	89.881	ENSNGAG00000009384	Ddb1	96	89.881	Nannospalax_galili
ENSOMEG00000006181	ddb1	99	96.080	ENSNBRG00000019581	ddb1	96	96.080	Neolamprologus_brichardi
ENSOMEG00000006181	ddb1	97	88.899	ENSNLEG00000002022	DDB1	94	88.899	Nomascus_leucogenys
ENSOMEG00000006181	ddb1	86	97.059	ENSMEUG00000001099	DDB1	89	88.859	Notamacropus_eugenii
ENSOMEG00000006181	ddb1	89	80.972	ENSOPRG00000008254	DDB1	87	80.972	Ochotona_princeps
ENSOMEG00000006181	ddb1	99	89.608	ENSODEG00000002419	DDB1	96	89.608	Octodon_degus
ENSOMEG00000006181	ddb1	99	96.080	ENSONIG00000005804	ddb1	96	96.080	Oreochromis_niloticus
ENSOMEG00000006181	ddb1	90	89.383	ENSOANG00000004897	DDB1	96	89.383	Ornithorhynchus_anatinus
ENSOMEG00000006181	ddb1	99	89.790	ENSOCUG00000001667	DDB1	96	89.790	Oryctolagus_cuniculus
ENSOMEG00000006181	ddb1	98	98.891	ENSORLG00000001399	ddb1	98	99.135	Oryzias_latipes
ENSOMEG00000006181	ddb1	98	98.799	ENSORLG00020001277	ddb1	96	98.799	Oryzias_latipes_hni
ENSOMEG00000006181	ddb1	97	99.257	ENSORLG00015002080	ddb1	99	99.257	Oryzias_latipes_hsok
ENSOMEG00000006181	ddb1	99	89.881	ENSOGAG00000016103	DDB1	96	89.881	Otolemur_garnettii
ENSOMEG00000006181	ddb1	99	89.699	ENSOARG00000011716	DDB1	95	89.699	Ovis_aries
ENSOMEG00000006181	ddb1	99	89.699	ENSPPAG00000035343	DDB1	96	89.699	Pan_paniscus
ENSOMEG00000006181	ddb1	99	89.790	ENSPPRG00000013300	DDB1	96	89.790	Panthera_pardus
ENSOMEG00000006181	ddb1	97	89.777	ENSPTIG00000006909	DDB1	94	89.777	Panthera_tigris_altaica
ENSOMEG00000006181	ddb1	99	89.699	ENSPTRG00000003737	DDB1	96	89.699	Pan_troglodytes
ENSOMEG00000006181	ddb1	99	89.699	ENSPANG00000000242	DDB1	96	89.699	Papio_anubis
ENSOMEG00000006181	ddb1	98	95.556	ENSPKIG00000019213	ddb1	94	95.556	Paramormyrops_kingsleyae
ENSOMEG00000006181	ddb1	98	88.714	ENSPSIG00000013275	DDB1	96	88.714	Pelodiscus_sinensis
ENSOMEG00000006181	ddb1	99	92.058	ENSPMGG00000021179	ddb1	99	98.163	Periophthalmus_magnuspinnatus
ENSOMEG00000006181	ddb1	99	89.790	ENSPEMG00000012241	Ddb1	96	89.790	Peromyscus_maniculatus_bairdii
ENSOMEG00000006181	ddb1	92	86.837	ENSPMAG00000008479	ddb1	100	86.837	Petromyzon_marinus
ENSOMEG00000006181	ddb1	99	90.155	ENSPCIG00000002643	DDB1	96	90.155	Phascolarctos_cinereus
ENSOMEG00000006181	ddb1	97	98.133	ENSPFOG00000002768	ddb1	94	98.133	Poecilia_formosa
ENSOMEG00000006181	ddb1	99	96.889	ENSPLAG00000017227	ddb1	99	96.889	Poecilia_latipinna
ENSOMEG00000006181	ddb1	99	96.889	ENSPMEG00000011398	ddb1	99	96.889	Poecilia_mexicana
ENSOMEG00000006181	ddb1	97	98.138	ENSPREG00000004440	ddb1	97	98.138	Poecilia_reticulata
ENSOMEG00000006181	ddb1	96	87.640	ENSPPYG00000003193	DDB1	93	87.640	Pongo_abelii
ENSOMEG00000006181	ddb1	83	86.922	ENSPCAG00000011040	DDB1	81	86.922	Procavia_capensis
ENSOMEG00000006181	ddb1	99	89.536	ENSPCOG00000015176	DDB1	96	89.536	Propithecus_coquereli
ENSOMEG00000006181	ddb1	99	89.608	ENSPVAG00000003847	DDB1	96	89.608	Pteropus_vampyrus
ENSOMEG00000006181	ddb1	98	96.111	ENSPNAG00000006635	ddb1	98	96.026	Pygocentrus_nattereri
ENSOMEG00000006181	ddb1	99	89.881	ENSRNOG00000020715	Ddb1	96	89.881	Rattus_norvegicus
ENSOMEG00000006181	ddb1	99	89.699	ENSRBIG00000033611	DDB1	97	89.699	Rhinopithecus_bieti
ENSOMEG00000006181	ddb1	99	89.699	ENSRROG00000041407	DDB1	96	89.699	Rhinopithecus_roxellana
ENSOMEG00000006181	ddb1	99	89.790	ENSSBOG00000019775	DDB1	96	89.790	Saimiri_boliviensis_boliviensis
ENSOMEG00000006181	ddb1	93	87.537	ENSSHAG00000011600	DDB1	96	87.537	Sarcophilus_harrisii
ENSOMEG00000006181	ddb1	97	95.996	ENSSFOG00015011151	ddb1	97	95.996	Scleropages_formosus
ENSOMEG00000006181	ddb1	99	95.807	ENSSMAG00000009495	ddb1	96	95.807	Scophthalmus_maximus
ENSOMEG00000006181	ddb1	99	96.354	ENSSDUG00000004642	ddb1	96	96.354	Seriola_dumerili
ENSOMEG00000006181	ddb1	99	96.354	ENSSLDG00000015804	ddb1	96	96.354	Seriola_lalandi_dorsalis
ENSOMEG00000006181	ddb1	70	94.340	ENSSARG00000003290	-	71	94.340	Sorex_araneus
ENSOMEG00000006181	ddb1	99	89.152	ENSSPUG00000019338	DDB1	96	89.152	Sphenodon_punctatus
ENSOMEG00000006181	ddb1	98	97.778	ENSSPAG00000009888	ddb1	99	97.778	Stegastes_partitus
ENSOMEG00000006181	ddb1	97	91.113	ENSSSCG00000013094	DDB1	94	91.113	Sus_scrofa
ENSOMEG00000006181	ddb1	96	91.370	ENSTGUG00000006414	DDB1	94	91.370	Taeniopygia_guttata
ENSOMEG00000006181	ddb1	97	97.207	ENSTRUG00000016682	ddb1	99	97.207	Takifugu_rubripes
ENSOMEG00000006181	ddb1	87	89.572	ENSTNIG00000009565	ddb1	96	89.572	Tetraodon_nigroviridis
ENSOMEG00000006181	ddb1	89	85.837	ENSTTRG00000011055	DDB1	88	85.837	Tursiops_truncatus
ENSOMEG00000006181	ddb1	97	91.713	ENSUAMG00000017793	DDB1	93	91.713	Ursus_americanus
ENSOMEG00000006181	ddb1	97	91.713	ENSUMAG00000011788	DDB1	98	91.713	Ursus_maritimus
ENSOMEG00000006181	ddb1	93	83.573	ENSVPAG00000007963	DDB1	88	86.674	Vicugna_pacos
ENSOMEG00000006181	ddb1	99	89.790	ENSVVUG00000004987	DDB1	96	89.790	Vulpes_vulpes
ENSOMEG00000006181	ddb1	99	87.012	ENSXETG00000008820	ddb1	96	87.012	Xenopus_tropicalis
ENSOMEG00000006181	ddb1	99	91.834	ENSXCOG00000013956	ddb1	99	97.959	Xiphophorus_couchianus
ENSOMEG00000006181	ddb1	97	97.860	ENSXMAG00000000022	ddb1	99	97.860	Xiphophorus_maculatus