EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSOMEG00000007590 (Gene tree)
Gene ID: 112161747
Gene Symbol: smndc1
Alias: -
Full Name: survival motor neuron domain containing 1
Gene Type: protein_coding
Species: Oryzias_melastigma
Status: putative
Strand: Plus strand
Length: 4777 bases
Position: chrNVQA01000028.1:17708611-17713387
Accession: 112161747
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOMEP00000006530	SMN	PF06003.12	9.6e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOMET00000005668	-	2137	-	ENSOMEP00000006530	237 (aa)	XP_024152926	UPI000CF7BF9F

Gene Model

Click here to download ENSOMEG00000007590's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOMEG00000007590's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOMEG00000007590	smndc1	100	77.731	ENSG00000119953	SMNDC1	100	77.731	Homo_sapiens
ENSOMEG00000007590	smndc1	100	81.933	ENSAPOG00000021772	smndc1	100	81.933	Acanthochromis_polyacanthus
ENSOMEG00000007590	smndc1	100	77.731	ENSAMEG00000005251	SMNDC1	100	77.731	Ailuropoda_melanoleuca
ENSOMEG00000007590	smndc1	100	81.513	ENSACIG00000004819	smndc1	100	81.513	Amphilophus_citrinellus
ENSOMEG00000007590	smndc1	100	81.513	ENSAOCG00000017869	smndc1	100	81.513	Amphiprion_ocellaris
ENSOMEG00000007590	smndc1	100	81.513	ENSAPEG00000007752	smndc1	100	81.513	Amphiprion_percula
ENSOMEG00000007590	smndc1	100	82.353	ENSATEG00000006830	smndc1	100	82.353	Anabas_testudineus
ENSOMEG00000007590	smndc1	83	77.778	ENSAPLG00000004322	SMNDC1	100	77.778	Anas_platyrhynchos
ENSOMEG00000007590	smndc1	100	78.151	ENSACAG00000005983	SMNDC1	100	78.151	Anolis_carolinensis
ENSOMEG00000007590	smndc1	100	77.731	ENSANAG00000032875	SMNDC1	100	77.731	Aotus_nancymaae
ENSOMEG00000007590	smndc1	100	79.832	ENSACLG00000016360	smndc1	100	79.832	Astatotilapia_calliptera
ENSOMEG00000007590	smndc1	100	79.747	ENSAMXG00000020310	smndc1	100	79.747	Astyanax_mexicanus
ENSOMEG00000007590	smndc1	100	77.731	ENSBTAG00000000551	SMNDC1	100	77.731	Bos_taurus
ENSOMEG00000007590	smndc1	100	77.731	ENSCJAG00000018624	SMNDC1	100	77.731	Callithrix_jacchus
ENSOMEG00000007590	smndc1	100	77.731	ENSCAFG00000010720	SMNDC1	100	77.731	Canis_familiaris
ENSOMEG00000007590	smndc1	100	77.731	ENSCAFG00020011913	SMNDC1	100	77.731	Canis_lupus_dingo
ENSOMEG00000007590	smndc1	100	77.731	ENSCHIG00000010604	SMNDC1	100	77.731	Capra_hircus
ENSOMEG00000007590	smndc1	100	77.731	ENSTSYG00000026454	SMNDC1	100	77.731	Carlito_syrichta
ENSOMEG00000007590	smndc1	100	64.167	ENSCAPG00000009132	SMNDC1	100	74.627	Cavia_aperea
ENSOMEG00000007590	smndc1	100	77.731	ENSCPOG00000031666	SMNDC1	100	77.731	Cavia_porcellus
ENSOMEG00000007590	smndc1	100	77.731	ENSCCAG00000021793	SMNDC1	100	77.731	Cebus_capucinus
ENSOMEG00000007590	smndc1	100	77.311	ENSCATG00000035910	SMNDC1	100	77.311	Cercocebus_atys
ENSOMEG00000007590	smndc1	100	77.731	ENSCLAG00000002838	SMNDC1	100	77.731	Chinchilla_lanigera
ENSOMEG00000007590	smndc1	100	77.731	ENSCSAG00000005169	SMNDC1	100	77.731	Chlorocebus_sabaeus
ENSOMEG00000007590	smndc1	81	73.057	ENSCHOG00000002936	SMNDC1	100	73.057	Choloepus_hoffmanni
ENSOMEG00000007590	smndc1	100	78.151	ENSCPBG00000012837	SMNDC1	100	78.151	Chrysemys_picta_bellii
ENSOMEG00000007590	smndc1	100	60.759	ENSCANG00000036994	-	100	60.759	Colobus_angolensis_palliatus
ENSOMEG00000007590	smndc1	100	71.849	ENSCANG00000034620	-	100	71.849	Colobus_angolensis_palliatus
ENSOMEG00000007590	smndc1	100	77.731	ENSCANG00000031720	-	100	77.731	Colobus_angolensis_palliatus
ENSOMEG00000007590	smndc1	100	77.311	ENSCGRG00001012973	Smndc1	100	77.311	Cricetulus_griseus_chok1gshd
ENSOMEG00000007590	smndc1	100	77.311	ENSCGRG00000012396	Smndc1	100	77.311	Cricetulus_griseus_crigri
ENSOMEG00000007590	smndc1	100	80.591	ENSCSEG00000015621	smndc1	100	80.591	Cynoglossus_semilaevis
ENSOMEG00000007590	smndc1	100	81.513	ENSCVAG00000020432	smndc1	100	81.513	Cyprinodon_variegatus
ENSOMEG00000007590	smndc1	100	78.903	ENSDARG00000056235	smndc1	100	78.903	Danio_rerio
ENSOMEG00000007590	smndc1	100	77.731	ENSDNOG00000016387	SMNDC1	83	77.731	Dasypus_novemcinctus
ENSOMEG00000007590	smndc1	100	77.731	ENSDORG00000023715	Smndc1	100	77.731	Dipodomys_ordii
ENSOMEG00000007590	smndc1	95	39.919	FBgn0039977	CG17454	98	41.532	Drosophila_melanogaster
ENSOMEG00000007590	smndc1	100	65.145	ENSEBUG00000010929	smndc1	100	65.145	Eptatretus_burgeri
ENSOMEG00000007590	smndc1	100	77.731	ENSEASG00005014930	SMNDC1	100	77.731	Equus_asinus_asinus
ENSOMEG00000007590	smndc1	100	77.731	ENSECAG00000029973	SMNDC1	100	77.731	Equus_caballus
ENSOMEG00000007590	smndc1	60	88.542	ENSEEUG00000013407	-	72	88.542	Erinaceus_europaeus
ENSOMEG00000007590	smndc1	100	78.481	ENSELUG00000000227	smndc1	100	78.481	Esox_lucius
ENSOMEG00000007590	smndc1	100	77.731	ENSFCAG00000027353	SMNDC1	100	77.731	Felis_catus
ENSOMEG00000007590	smndc1	100	77.311	ENSFALG00000002306	SMNDC1	100	77.311	Ficedula_albicollis
ENSOMEG00000007590	smndc1	100	77.731	ENSFDAG00000006468	SMNDC1	100	77.731	Fukomys_damarensis
ENSOMEG00000007590	smndc1	100	83.193	ENSFHEG00000020150	smndc1	100	83.193	Fundulus_heteroclitus
ENSOMEG00000007590	smndc1	100	78.481	ENSGMOG00000016585	smndc1	100	78.481	Gadus_morhua
ENSOMEG00000007590	smndc1	100	77.311	ENSGALG00000008561	SMNDC1	100	77.311	Gallus_gallus
ENSOMEG00000007590	smndc1	100	83.613	ENSGAFG00000011582	smndc1	100	83.613	Gambusia_affinis
ENSOMEG00000007590	smndc1	100	78.992	ENSGACG00000009468	smndc1	100	78.992	Gasterosteus_aculeatus
ENSOMEG00000007590	smndc1	100	78.151	ENSGAGG00000024547	SMNDC1	100	78.151	Gopherus_agassizii
ENSOMEG00000007590	smndc1	100	77.731	ENSGGOG00000010071	SMNDC1	100	77.731	Gorilla_gorilla
ENSOMEG00000007590	smndc1	100	79.832	ENSHBUG00000017596	smndc1	100	79.832	Haplochromis_burtoni
ENSOMEG00000007590	smndc1	100	77.731	ENSHGLG00000013390	-	100	77.731	Heterocephalus_glaber_female
ENSOMEG00000007590	smndc1	100	55.556	ENSHGLG00000001157	-	100	55.556	Heterocephalus_glaber_female
ENSOMEG00000007590	smndc1	100	77.731	ENSHGLG00100004814	-	100	77.731	Heterocephalus_glaber_male
ENSOMEG00000007590	smndc1	100	62.140	ENSHGLG00100004278	-	100	61.728	Heterocephalus_glaber_male
ENSOMEG00000007590	smndc1	100	76.987	ENSHCOG00000000783	smndc1	100	76.987	Hippocampus_comes
ENSOMEG00000007590	smndc1	100	78.903	ENSIPUG00000004217	smndc1	100	78.903	Ictalurus_punctatus
ENSOMEG00000007590	smndc1	100	77.731	ENSSTOG00000006088	SMNDC1	100	77.731	Ictidomys_tridecemlineatus
ENSOMEG00000007590	smndc1	100	77.731	ENSJJAG00000019974	Smndc1	100	77.731	Jaculus_jaculus
ENSOMEG00000007590	smndc1	100	80.252	ENSKMAG00000020134	smndc1	100	80.252	Kryptolebias_marmoratus
ENSOMEG00000007590	smndc1	100	80.591	ENSLBEG00000004598	smndc1	100	80.591	Labrus_bergylta
ENSOMEG00000007590	smndc1	100	76.050	ENSLACG00000007784	SMNDC1	100	76.050	Latimeria_chalumnae
ENSOMEG00000007590	smndc1	100	79.325	ENSLOCG00000012355	smndc1	100	79.325	Lepisosteus_oculatus
ENSOMEG00000007590	smndc1	100	77.311	ENSLAFG00000014353	SMNDC1	100	77.311	Loxodonta_africana
ENSOMEG00000007590	smndc1	100	65.823	ENSMFAG00000038381	-	100	65.823	Macaca_fascicularis
ENSOMEG00000007590	smndc1	100	77.731	ENSMFAG00000002433	-	100	77.731	Macaca_fascicularis
ENSOMEG00000007590	smndc1	100	77.731	ENSMMUG00000007775	SMNDC1	100	77.731	Macaca_mulatta
ENSOMEG00000007590	smndc1	100	65.823	ENSMMUG00000045875	-	100	65.823	Macaca_mulatta
ENSOMEG00000007590	smndc1	100	68.487	ENSMNEG00000033853	-	100	68.487	Macaca_nemestrina
ENSOMEG00000007590	smndc1	100	77.731	ENSMNEG00000042963	-	100	77.731	Macaca_nemestrina
ENSOMEG00000007590	smndc1	100	71.849	ENSMLEG00000040236	SMNDC1	100	71.429	Mandrillus_leucophaeus
ENSOMEG00000007590	smndc1	89	78.404	ENSMAMG00000018233	smndc1	87	78.404	Mastacembelus_armatus
ENSOMEG00000007590	smndc1	100	79.832	ENSMZEG00005027510	smndc1	100	79.832	Maylandia_zebra
ENSOMEG00000007590	smndc1	84	77.500	ENSMGAG00000010777	SMNDC1	84	77.500	Meleagris_gallopavo
ENSOMEG00000007590	smndc1	99	62.288	ENSMAUG00000005459	-	93	62.762	Mesocricetus_auratus
ENSOMEG00000007590	smndc1	100	77.731	ENSMAUG00000012243	-	100	77.731	Mesocricetus_auratus
ENSOMEG00000007590	smndc1	100	67.089	ENSMICG00000031640	-	100	67.089	Microcebus_murinus
ENSOMEG00000007590	smndc1	100	77.311	ENSMICG00000027336	-	100	77.311	Microcebus_murinus
ENSOMEG00000007590	smndc1	100	77.311	ENSMOCG00000002458	Smndc1	100	77.311	Microtus_ochrogaster
ENSOMEG00000007590	smndc1	100	82.353	ENSMMOG00000008856	smndc1	100	82.353	Mola_mola
ENSOMEG00000007590	smndc1	100	77.731	ENSMODG00000010542	SMNDC1	100	77.731	Monodelphis_domestica
ENSOMEG00000007590	smndc1	100	79.832	ENSMALG00000017598	smndc1	100	79.832	Monopterus_albus
ENSOMEG00000007590	smndc1	100	77.311	MGP_CAROLIEiJ_G0023072	Smndc1	100	77.311	Mus_caroli
ENSOMEG00000007590	smndc1	100	77.311	ENSMUSG00000025024	Smndc1	100	77.311	Mus_musculus
ENSOMEG00000007590	smndc1	100	77.311	MGP_PahariEiJ_G0014560	Smndc1	100	77.311	Mus_pahari
ENSOMEG00000007590	smndc1	100	77.311	MGP_SPRETEiJ_G0023993	Smndc1	100	77.311	Mus_spretus
ENSOMEG00000007590	smndc1	100	77.731	ENSMPUG00000002089	SMNDC1	100	77.731	Mustela_putorius_furo
ENSOMEG00000007590	smndc1	100	77.731	ENSMLUG00000016007	SMNDC1	100	77.731	Myotis_lucifugus
ENSOMEG00000007590	smndc1	100	77.731	ENSNGAG00000006833	Smndc1	100	77.731	Nannospalax_galili
ENSOMEG00000007590	smndc1	100	80.252	ENSNBRG00000017089	smndc1	100	80.252	Neolamprologus_brichardi
ENSOMEG00000007590	smndc1	100	77.731	ENSNLEG00000015471	SMNDC1	100	77.731	Nomascus_leucogenys
ENSOMEG00000007590	smndc1	82	55.721	ENSMEUG00000010120	-	100	55.000	Notamacropus_eugenii
ENSOMEG00000007590	smndc1	100	77.731	ENSOPRG00000015348	SMNDC1	100	77.731	Ochotona_princeps
ENSOMEG00000007590	smndc1	100	56.962	ENSODEG00000007594	-	100	54.852	Octodon_degus
ENSOMEG00000007590	smndc1	100	80.252	ENSONIG00000000434	smndc1	100	80.252	Oreochromis_niloticus
ENSOMEG00000007590	smndc1	100	78.151	ENSOANG00000001598	SMNDC1	100	78.151	Ornithorhynchus_anatinus
ENSOMEG00000007590	smndc1	100	77.731	ENSOCUG00000008145	-	100	77.731	Oryctolagus_cuniculus
ENSOMEG00000007590	smndc1	100	58.228	ENSOCUG00000012274	-	100	60.759	Oryctolagus_cuniculus
ENSOMEG00000007590	smndc1	100	87.815	ENSORLG00000005934	smndc1	95	87.815	Oryzias_latipes
ENSOMEG00000007590	smndc1	100	87.815	ENSORLG00020008796	smndc1	95	87.815	Oryzias_latipes_hni
ENSOMEG00000007590	smndc1	100	87.815	ENSORLG00015013666	smndc1	100	87.815	Oryzias_latipes_hsok
ENSOMEG00000007590	smndc1	100	77.731	ENSOGAG00000000571	SMNDC1	100	77.731	Otolemur_garnettii
ENSOMEG00000007590	smndc1	100	77.731	ENSOARG00000009500	SMNDC1	100	77.731	Ovis_aries
ENSOMEG00000007590	smndc1	100	77.731	ENSPPAG00000027815	SMNDC1	100	77.731	Pan_paniscus
ENSOMEG00000007590	smndc1	100	77.731	ENSPPRG00000013749	SMNDC1	100	77.731	Panthera_pardus
ENSOMEG00000007590	smndc1	100	77.731	ENSPTIG00000011451	SMNDC1	100	77.731	Panthera_tigris_altaica
ENSOMEG00000007590	smndc1	100	77.731	ENSPTRG00000002937	SMNDC1	100	77.731	Pan_troglodytes
ENSOMEG00000007590	smndc1	100	73.418	ENSPANG00000031346	-	100	73.418	Papio_anubis
ENSOMEG00000007590	smndc1	100	77.731	ENSPANG00000020805	-	100	77.731	Papio_anubis
ENSOMEG00000007590	smndc1	100	80.169	ENSPKIG00000017164	smndc1	100	80.169	Paramormyrops_kingsleyae
ENSOMEG00000007590	smndc1	100	78.151	ENSPSIG00000012257	SMNDC1	100	78.151	Pelodiscus_sinensis
ENSOMEG00000007590	smndc1	100	78.903	ENSPMGG00000015651	smndc1	100	78.903	Periophthalmus_magnuspinnatus
ENSOMEG00000007590	smndc1	100	77.731	ENSPEMG00000022058	Smndc1	100	77.731	Peromyscus_maniculatus_bairdii
ENSOMEG00000007590	smndc1	100	62.295	ENSPMAG00000007705	smndc1	100	62.295	Petromyzon_marinus
ENSOMEG00000007590	smndc1	100	77.731	ENSPCIG00000018419	SMNDC1	100	77.731	Phascolarctos_cinereus
ENSOMEG00000007590	smndc1	97	58.079	ENSPCIG00000009693	-	99	58.079	Phascolarctos_cinereus
ENSOMEG00000007590	smndc1	100	84.034	ENSPFOG00000017113	smndc1	100	84.034	Poecilia_formosa
ENSOMEG00000007590	smndc1	100	83.613	ENSPLAG00000010372	smndc1	100	83.613	Poecilia_latipinna
ENSOMEG00000007590	smndc1	100	84.454	ENSPMEG00000012288	smndc1	100	84.454	Poecilia_mexicana
ENSOMEG00000007590	smndc1	100	84.454	ENSPREG00000012279	smndc1	100	84.454	Poecilia_reticulata
ENSOMEG00000007590	smndc1	100	77.731	ENSPPYG00000002643	SMNDC1	100	77.731	Pongo_abelii
ENSOMEG00000007590	smndc1	81	72.539	ENSPCAG00000016183	SMNDC1	100	72.539	Procavia_capensis
ENSOMEG00000007590	smndc1	100	77.311	ENSPCOG00000024343	SMNDC1	100	77.311	Propithecus_coquereli
ENSOMEG00000007590	smndc1	77	91.667	ENSPVAG00000004368	SMNDC1	77	91.667	Pteropus_vampyrus
ENSOMEG00000007590	smndc1	83	79.293	ENSPNYG00000024093	smndc1	86	79.293	Pundamilia_nyererei
ENSOMEG00000007590	smndc1	100	78.903	ENSPNAG00000025285	smndc1	100	78.903	Pygocentrus_nattereri
ENSOMEG00000007590	smndc1	100	77.311	ENSRNOG00000014833	Smndc1	100	77.311	Rattus_norvegicus
ENSOMEG00000007590	smndc1	100	63.291	ENSRBIG00000032452	-	100	63.291	Rhinopithecus_bieti
ENSOMEG00000007590	smndc1	100	77.311	ENSRBIG00000000224	-	100	77.311	Rhinopithecus_bieti
ENSOMEG00000007590	smndc1	100	77.731	ENSRROG00000044992	-	100	77.731	Rhinopithecus_roxellana
ENSOMEG00000007590	smndc1	100	63.713	ENSRROG00000039125	-	100	63.713	Rhinopithecus_roxellana
ENSOMEG00000007590	smndc1	100	77.731	ENSSBOG00000026789	SMNDC1	100	77.731	Saimiri_boliviensis_boliviensis
ENSOMEG00000007590	smndc1	100	77.731	ENSSHAG00000015189	SMNDC1	100	77.731	Sarcophilus_harrisii
ENSOMEG00000007590	smndc1	100	78.059	ENSSFOG00015008311	smndc1	100	78.059	Scleropages_formosus
ENSOMEG00000007590	smndc1	100	79.832	ENSSMAG00000020118	smndc1	100	79.832	Scophthalmus_maximus
ENSOMEG00000007590	smndc1	100	81.933	ENSSDUG00000015330	smndc1	100	81.933	Seriola_dumerili
ENSOMEG00000007590	smndc1	100	81.933	ENSSLDG00000017325	smndc1	100	81.933	Seriola_lalandi_dorsalis
ENSOMEG00000007590	smndc1	100	77.731	ENSSARG00000006063	SMNDC1	100	77.731	Sorex_araneus
ENSOMEG00000007590	smndc1	100	77.731	ENSSPUG00000004574	SMNDC1	100	77.731	Sphenodon_punctatus
ENSOMEG00000007590	smndc1	100	81.092	ENSSPAG00000000338	smndc1	100	81.092	Stegastes_partitus
ENSOMEG00000007590	smndc1	100	77.731	ENSSSCG00000030507	SMNDC1	100	77.731	Sus_scrofa
ENSOMEG00000007590	smndc1	100	77.311	ENSTGUG00000010599	SMNDC1	100	77.311	Taeniopygia_guttata
ENSOMEG00000007590	smndc1	100	81.092	ENSTRUG00000023281	smndc1	100	81.092	Takifugu_rubripes
ENSOMEG00000007590	smndc1	100	79.412	ENSTNIG00000013331	smndc1	100	79.412	Tetraodon_nigroviridis
ENSOMEG00000007590	smndc1	100	77.731	ENSTBEG00000014337	SMNDC1	100	77.731	Tupaia_belangeri
ENSOMEG00000007590	smndc1	100	77.731	ENSUAMG00000008142	SMNDC1	100	77.731	Ursus_americanus
ENSOMEG00000007590	smndc1	100	77.731	ENSUMAG00000023722	SMNDC1	100	77.731	Ursus_maritimus
ENSOMEG00000007590	smndc1	83	77.778	ENSVPAG00000003402	SMNDC1	100	77.778	Vicugna_pacos
ENSOMEG00000007590	smndc1	100	77.731	ENSVVUG00000007820	SMNDC1	100	77.731	Vulpes_vulpes
ENSOMEG00000007590	smndc1	54	67.969	ENSXETG00000015415	SMNDC1	96	65.441	Xenopus_tropicalis
ENSOMEG00000007590	smndc1	100	82.700	ENSXCOG00000009159	smndc1	100	82.700	Xiphophorus_couchianus
ENSOMEG00000007590	smndc1	100	82.773	ENSXMAG00000012755	smndc1	100	82.773	Xiphophorus_maculatus