EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSOMEG00000009312 (Gene tree)
Gene ID: 112160495
Gene Symbol: pum1
Alias: -
Full Name: pumilio RNA-binding family member 1
Gene Type: protein_coding
Species: Oryzias_melastigma
Status: putative
Strand: Plus strand
Length: 16497 bases
Position: chrNVQA01000004.1:9273843-9290339
Accession: ZDB-GENE-030131-2074
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOMEP00000027057	PUF	PF00806.19	8e-71	1	8
ENSOMEP00000027057	PUF	PF00806.19	8e-71	2	8
ENSOMEP00000027057	PUF	PF00806.19	8e-71	3	8
ENSOMEP00000027057	PUF	PF00806.19	8e-71	4	8
ENSOMEP00000027057	PUF	PF00806.19	8e-71	5	8
ENSOMEP00000027057	PUF	PF00806.19	8e-71	6	8
ENSOMEP00000027057	PUF	PF00806.19	8e-71	7	8
ENSOMEP00000027057	PUF	PF00806.19	8e-71	8	8

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOMET00000002945	-	2874	-	ENSOMEP00000027057	957 (aa)	-	-

Gene Model

Click here to download ENSOMEG00000009312's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOMEG00000009312's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOMEG00000009312	pum1	100	76.846	ENSG00000134644	PUM1	90	93.220	Homo_sapiens
ENSOMEG00000009312	pum1	100	98.554	ENSAPOG00000021632	pum1	100	88.664	Acanthochromis_polyacanthus
ENSOMEG00000009312	pum1	100	98.554	ENSAOCG00000003944	pum1	100	94.924	Amphiprion_ocellaris
ENSOMEG00000009312	pum1	100	98.554	ENSAPEG00000014550	pum1	100	94.924	Amphiprion_percula
ENSOMEG00000009312	pum1	100	98.554	ENSATEG00000016004	pum1	100	94.812	Anabas_testudineus
ENSOMEG00000009312	pum1	100	91.325	ENSAPLG00000009351	PUM1	90	93.253	Anas_platyrhynchos
ENSOMEG00000009312	pum1	100	91.325	ENSACAG00000000682	PUM1	88	90.115	Anolis_carolinensis
ENSOMEG00000009312	pum1	100	76.747	ENSANAG00000027865	PUM1	90	92.978	Aotus_nancymaae
ENSOMEG00000009312	pum1	100	74.630	ENSACLG00000019354	pum1	95	98.554	Astatotilapia_calliptera
ENSOMEG00000009312	pum1	100	77.326	ENSBTAG00000018979	PUM1	90	93.220	Bos_taurus
ENSOMEG00000009312	pum1	100	76.946	ENSCJAG00000006035	PUM1	90	92.771	Callithrix_jacchus
ENSOMEG00000009312	pum1	100	90.361	ENSCAFG00020024616	PUM1	100	92.771	Canis_lupus_dingo
ENSOMEG00000009312	pum1	100	77.326	ENSCHIG00000012952	PUM1	90	93.220	Capra_hircus
ENSOMEG00000009312	pum1	100	73.054	ENSTSYG00000008868	PUM1	89	71.900	Carlito_syrichta
ENSOMEG00000009312	pum1	100	90.120	ENSCPOG00000031613	PUM1	90	92.530	Cavia_porcellus
ENSOMEG00000009312	pum1	100	75.400	ENSCATG00000017991	PUM1	87	92.771	Cercocebus_atys
ENSOMEG00000009312	pum1	100	90.120	ENSCLAG00000007662	PUM1	90	92.530	Chinchilla_lanigera
ENSOMEG00000009312	pum1	100	77.027	ENSCSAG00000001028	PUM1	90	89.655	Chlorocebus_sabaeus
ENSOMEG00000009312	pum1	99	65.292	ENSCHOG00000010245	PUM1	82	66.667	Choloepus_hoffmanni
ENSOMEG00000009312	pum1	98	91.566	ENSCPBG00000009288	PUM1	98	93.494	Chrysemys_picta_bellii
ENSOMEG00000009312	pum1	100	76.846	ENSCANG00000042606	PUM1	88	92.771	Colobus_angolensis_palliatus
ENSOMEG00000009312	pum1	100	76.744	ENSCGRG00001024949	Pum1	90	92.494	Cricetulus_griseus_chok1gshd
ENSOMEG00000009312	pum1	100	76.744	ENSCGRG00000014197	Pum1	90	92.494	Cricetulus_griseus_crigri
ENSOMEG00000009312	pum1	100	97.831	ENSCVAG00000007043	pum1	87	97.831	Cyprinodon_variegatus
ENSOMEG00000009312	pum1	100	94.458	ENSDARG00000099256	pum1	86	94.458	Danio_rerio
ENSOMEG00000009312	pum1	100	89.880	ENSDNOG00000010939	PUM1	90	92.289	Dasypus_novemcinctus
ENSOMEG00000009312	pum1	100	76.494	ENSDORG00000001875	Pum1	100	75.848	Dipodomys_ordii
ENSOMEG00000009312	pum1	51	65.474	ENSETEG00000004355	PUM1	87	77.688	Echinops_telfairi
ENSOMEG00000009312	pum1	54	76.641	ENSEASG00005010813	PUM1	90	92.289	Equus_asinus_asinus
ENSOMEG00000009312	pum1	54	76.641	ENSECAG00000021369	PUM1	90	92.289	Equus_caballus
ENSOMEG00000009312	pum1	78	90.120	ENSEEUG00000003871	PUM1	62	89.425	Erinaceus_europaeus
ENSOMEG00000009312	pum1	100	95.663	ENSELUG00000002409	pum1	92	97.590	Esox_lucius
ENSOMEG00000009312	pum1	99	90.799	ENSFCAG00000010374	PUM1	90	92.771	Felis_catus
ENSOMEG00000009312	pum1	100	90.049	ENSFDAG00000011319	PUM1	90	89.425	Fukomys_damarensis
ENSOMEG00000009312	pum1	90	98.072	ENSGMOG00000010491	pum1	85	98.072	Gadus_morhua
ENSOMEG00000009312	pum1	100	91.325	ENSGALG00000042598	PUM1	90	93.253	Gallus_gallus
ENSOMEG00000009312	pum1	100	93.299	ENSGAFG00000015617	pum1	100	93.299	Gambusia_affinis
ENSOMEG00000009312	pum1	100	97.831	ENSGACG00000005717	pum1	87	97.831	Gasterosteus_aculeatus
ENSOMEG00000009312	pum1	100	91.566	ENSGAGG00000001290	PUM1	99	93.494	Gopherus_agassizii
ENSOMEG00000009312	pum1	100	76.846	ENSGGOG00000011983	PUM1	90	92.771	Gorilla_gorilla
ENSOMEG00000009312	pum1	100	74.561	ENSHBUG00000018718	pum1	87	98.554	Haplochromis_burtoni
ENSOMEG00000009312	pum1	100	89.806	ENSHGLG00000013819	Pum1	90	89.195	Heterocephalus_glaber_female
ENSOMEG00000009312	pum1	100	89.806	ENSHGLG00100008621	Pum1	90	89.195	Heterocephalus_glaber_male
ENSOMEG00000009312	pum1	100	95.181	ENSIPUG00000020421	pum1	84	95.181	Ictalurus_punctatus
ENSOMEG00000009312	pum1	100	76.834	ENSSTOG00000010757	PUM1	90	92.530	Ictidomys_tridecemlineatus
ENSOMEG00000009312	pum1	58	77.027	ENSJJAG00000000530	Pum1	90	92.771	Jaculus_jaculus
ENSOMEG00000009312	pum1	100	98.313	ENSKMAG00000003481	pum1	87	98.313	Kryptolebias_marmoratus
ENSOMEG00000009312	pum1	100	71.977	ENSLACG00000017188	PUM1	89	83.971	Latimeria_chalumnae
ENSOMEG00000009312	pum1	100	76.770	ENSMFAG00000010291	PUM1	90	92.771	Macaca_fascicularis
ENSOMEG00000009312	pum1	100	76.846	ENSMMUG00000013520	PUM1	90	92.771	Macaca_mulatta
ENSOMEG00000009312	pum1	100	76.846	ENSMNEG00000034639	PUM1	90	92.771	Macaca_nemestrina
ENSOMEG00000009312	pum1	100	76.846	ENSMLEG00000038743	PUM1	87	92.771	Mandrillus_leucophaeus
ENSOMEG00000009312	pum1	100	98.072	ENSMAMG00000011606	pum1	95	91.566	Mastacembelus_armatus
ENSOMEG00000009312	pum1	100	75.686	ENSMZEG00005005834	pum1	87	98.554	Maylandia_zebra
ENSOMEG00000009312	pum1	100	91.325	ENSMGAG00000000724	PUM1	90	93.253	Meleagris_gallopavo
ENSOMEG00000009312	pum1	100	76.834	ENSMAUG00000022090	Pum1	90	92.530	Mesocricetus_auratus
ENSOMEG00000009312	pum1	100	90.602	ENSMICG00000007713	-	90	93.012	Microcebus_murinus
ENSOMEG00000009312	pum1	100	90.557	ENSMICG00000012213	-	89	90.799	Microcebus_murinus
ENSOMEG00000009312	pum1	100	76.834	ENSMOCG00000015463	Pum1	90	92.530	Microtus_ochrogaster
ENSOMEG00000009312	pum1	100	91.892	ENSMMOG00000019817	pum1	100	91.892	Mola_mola
ENSOMEG00000009312	pum1	100	93.712	ENSMALG00000016399	pum1	100	93.712	Monopterus_albus
ENSOMEG00000009312	pum1	100	90.799	MGP_CAROLIEiJ_G0026549	Pum1	90	93.220	Mus_caroli
ENSOMEG00000009312	pum1	100	90.557	ENSMUSG00000028580	Pum1	90	92.978	Mus_musculus
ENSOMEG00000009312	pum1	100	90.557	MGP_PahariEiJ_G0028881	Pum1	90	92.978	Mus_pahari
ENSOMEG00000009312	pum1	100	90.557	MGP_SPRETEiJ_G0027529	Pum1	90	92.978	Mus_spretus
ENSOMEG00000009312	pum1	100	90.799	ENSMLUG00000006490	PUM1	90	93.220	Myotis_lucifugus
ENSOMEG00000009312	pum1	100	90.120	ENSNGAG00000002378	Pum1	90	92.530	Nannospalax_galili
ENSOMEG00000009312	pum1	100	75.549	ENSNLEG00000001151	PUM1	87	89.639	Nomascus_leucogenys
ENSOMEG00000009312	pum1	79	90.654	ENSOPRG00000001776	PUM1	54	90.654	Ochotona_princeps
ENSOMEG00000009312	pum1	100	78.842	ENSODEG00000003465	PUM1	90	92.530	Octodon_degus
ENSOMEG00000009312	pum1	100	98.795	ENSONIG00000002290	pum1	87	98.795	Oreochromis_niloticus
ENSOMEG00000009312	pum1	92	63.926	ENSOANG00000004902	-	92	66.133	Ornithorhynchus_anatinus
ENSOMEG00000009312	pum1	99	77.043	ENSOCUG00000008641	PUM1	89	92.944	Oryctolagus_cuniculus
ENSOMEG00000009312	pum1	77	99.036	ENSORLG00000011482	pum1	85	99.036	Oryzias_latipes
ENSOMEG00000009312	pum1	100	99.036	ENSORLG00020019461	pum1	87	99.036	Oryzias_latipes_hni
ENSOMEG00000009312	pum1	100	99.036	ENSORLG00015011375	pum1	87	99.036	Oryzias_latipes_hsok
ENSOMEG00000009312	pum1	100	90.361	ENSOARG00000001899	PUM1	90	92.771	Ovis_aries
ENSOMEG00000009312	pum1	100	76.846	ENSPPAG00000044003	PUM1	90	92.771	Pan_paniscus
ENSOMEG00000009312	pum1	100	90.361	ENSPPRG00000001370	PUM1	87	92.771	Panthera_pardus
ENSOMEG00000009312	pum1	100	77.027	ENSPTIG00000010798	PUM1	87	92.771	Panthera_tigris_altaica
ENSOMEG00000009312	pum1	100	76.846	ENSPTRG00000000453	PUM1	90	92.771	Pan_troglodytes
ENSOMEG00000009312	pum1	100	76.770	ENSPANG00000016338	PUM1	90	92.771	Papio_anubis
ENSOMEG00000009312	pum1	100	92.289	ENSPKIG00000010578	pum1	84	92.048	Paramormyrops_kingsleyae
ENSOMEG00000009312	pum1	75	98.547	ENSPMGG00000005836	pum1	78	98.547	Periophthalmus_magnuspinnatus
ENSOMEG00000009312	pum1	100	76.834	ENSPEMG00000010009	Pum1	90	92.530	Peromyscus_maniculatus_bairdii
ENSOMEG00000009312	pum1	100	91.084	ENSPCIG00000014151	PUM1	85	92.771	Phascolarctos_cinereus
ENSOMEG00000009312	pum1	100	97.831	ENSPFOG00000007289	pum1	92	97.831	Poecilia_formosa
ENSOMEG00000009312	pum1	100	97.831	ENSPLAG00000007256	pum1	87	97.831	Poecilia_latipinna
ENSOMEG00000009312	pum1	100	97.831	ENSPMEG00000019543	pum1	93	97.831	Poecilia_mexicana
ENSOMEG00000009312	pum1	54	77.027	ENSPPYG00000001621	PUM1	90	89.655	Pongo_abelii
ENSOMEG00000009312	pum1	81	92.284	ENSPCAG00000001979	PUM1	64	92.284	Procavia_capensis
ENSOMEG00000009312	pum1	100	77.220	ENSPCOG00000004398	PUM1	90	93.012	Propithecus_coquereli
ENSOMEG00000009312	pum1	100	84.578	ENSPVAG00000005207	PUM1	87	86.988	Pteropus_vampyrus
ENSOMEG00000009312	pum1	100	90.660	ENSPNYG00000009518	pum1	100	90.660	Pundamilia_nyererei
ENSOMEG00000009312	pum1	100	82.452	ENSRNOG00000011709	Pum1	90	92.978	Rattus_norvegicus
ENSOMEG00000009312	pum1	100	76.770	ENSRBIG00000042521	PUM1	90	92.771	Rhinopithecus_bieti
ENSOMEG00000009312	pum1	100	76.846	ENSRROG00000020156	PUM1	90	93.220	Rhinopithecus_roxellana
ENSOMEG00000009312	pum1	100	76.846	ENSSBOG00000032037	PUM1	90	92.771	Saimiri_boliviensis_boliviensis
ENSOMEG00000009312	pum1	100	91.084	ENSSHAG00000010918	PUM1	85	92.771	Sarcophilus_harrisii
ENSOMEG00000009312	pum1	100	93.807	ENSSMAG00000010918	pum1	100	93.807	Scophthalmus_maximus
ENSOMEG00000009312	pum1	100	98.554	ENSSDUG00000009021	pum1	87	98.554	Seriola_dumerili
ENSOMEG00000009312	pum1	92	98.554	ENSSLDG00000009667	pum1	86	98.554	Seriola_lalandi_dorsalis
ENSOMEG00000009312	pum1	64	82.692	ENSSARG00000003055	PUM1	80	92.771	Sorex_araneus
ENSOMEG00000009312	pum1	100	91.325	ENSSPUG00000006267	PUM1	90	93.253	Sphenodon_punctatus
ENSOMEG00000009312	pum1	100	98.554	ENSSPAG00000016636	pum1	100	94.924	Stegastes_partitus
ENSOMEG00000009312	pum1	99	90.799	ENSSSCG00000003591	PUM1	90	92.771	Sus_scrofa
ENSOMEG00000009312	pum1	65	89.024	ENSTBEG00000013810	PUM1	56	89.024	Tupaia_belangeri
ENSOMEG00000009312	pum1	100	76.641	ENSTTRG00000007436	PUM1	87	92.289	Tursiops_truncatus
ENSOMEG00000009312	pum1	98	89.968	ENSUAMG00000018262	-	89	93.204	Ursus_americanus
ENSOMEG00000009312	pum1	100	76.869	ENSUMAG00000009211	PUM1	89	76.024	Ursus_maritimus
ENSOMEG00000009312	pum1	93	77.027	ENSVPAG00000005902	PUM1	82	92.771	Vicugna_pacos
ENSOMEG00000009312	pum1	100	77.326	ENSVVUG00000014631	PUM1	90	92.771	Vulpes_vulpes
ENSOMEG00000009312	pum1	88	97.831	ENSXMAG00000002945	pum1	84	97.831	Xiphophorus_maculatus