EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSOMEG00000009425 (Gene tree)
Gene ID: 112158669
Gene Symbol: cpsf6
Alias: -
Full Name: cleavage and polyadenylation specific factor 6
Gene Type: protein_coding
Species: Oryzias_melastigma
Status: putative
Strand: Minus strand
Length: 7961 bases
Position: chrNVQA01000003.1:9146327-9154287
Accession: 112158669
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOMEP00000008276	RRM_1	PF00076.22	1e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOMET00000002730	-	4930	-	ENSOMEP00000008276	552 (aa)	XP_024147901	UPI000CF7BC58

Gene Model

Click here to download ENSOMEG00000009425's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOMEG00000009425's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSOMEG00000009425	cpsf6	68	36.797	ENSOMEG00000000539	CPSF7	72	40.805

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOMEG00000009425	cpsf6	67	52.604	ENSG00000149532	CPSF7	100	50.000	Homo_sapiens
ENSOMEG00000009425	cpsf6	81	84.896	ENSG00000111605	CPSF6	94	78.137	Homo_sapiens
ENSOMEG00000009425	cpsf6	59	39.286	ENSAOCG00000012357	CPSF7	61	51.351	Amphiprion_ocellaris
ENSOMEG00000009425	cpsf6	59	39.759	ENSAPEG00000015375	CPSF7	61	51.351	Amphiprion_percula
ENSOMEG00000009425	cpsf6	62	92.216	ENSAMXG00000016745	CPSF6	75	91.515	Astyanax_mexicanus
ENSOMEG00000009425	cpsf6	65	54.688	ENSBTAG00000015263	CPSF7	68	49.162	Bos_taurus
ENSOMEG00000009425	cpsf6	67	52.604	ENSCJAG00000019282	CPSF7	84	51.412	Callithrix_jacchus
ENSOMEG00000009425	cpsf6	81	83.721	ENSCJAG00000001798	CPSF6	94	78.137	Callithrix_jacchus
ENSOMEG00000009425	cpsf6	65	54.688	ENSCAFG00000016152	CPSF7	68	49.162	Canis_familiaris
ENSOMEG00000009425	cpsf6	59	81.529	ENSCAFG00000000424	CPSF6	91	77.515	Canis_familiaris
ENSOMEG00000009425	cpsf6	65	54.688	ENSCAFG00020012753	CPSF7	68	49.162	Canis_lupus_dingo
ENSOMEG00000009425	cpsf6	65	54.688	ENSCHIG00000014655	CPSF7	68	49.162	Capra_hircus
ENSOMEG00000009425	cpsf6	78	83.721	ENSTSYG00000008591	CPSF6	91	77.470	Carlito_syrichta
ENSOMEG00000009425	cpsf6	65	54.688	ENSTSYG00000010138	-	68	49.162	Carlito_syrichta
ENSOMEG00000009425	cpsf6	53	61.268	ENSCAPG00000006384	CPSF7	70	55.491	Cavia_aperea
ENSOMEG00000009425	cpsf6	57	61.268	ENSCPOG00000009980	CPSF7	71	55.491	Cavia_porcellus
ENSOMEG00000009425	cpsf6	65	54.167	ENSCCAG00000032367	CPSF7	68	49.162	Cebus_capucinus
ENSOMEG00000009425	cpsf6	81	82.239	ENSCCAG00000028149	CPSF6	94	78.137	Cebus_capucinus
ENSOMEG00000009425	cpsf6	81	82.308	ENSCATG00000039288	CPSF6	94	78.137	Cercocebus_atys
ENSOMEG00000009425	cpsf6	67	52.604	ENSCATG00000042801	CPSF7	77	54.598	Cercocebus_atys
ENSOMEG00000009425	cpsf6	57	61.268	ENSCLAG00000003174	CPSF7	71	54.913	Chinchilla_lanigera
ENSOMEG00000009425	cpsf6	67	52.604	ENSCSAG00000006414	CPSF7	77	54.598	Chlorocebus_sabaeus
ENSOMEG00000009425	cpsf6	94	71.273	ENSCPBG00000013322	CPSF6	94	78.558	Chrysemys_picta_bellii
ENSOMEG00000009425	cpsf6	78	82.308	ENSCANG00000037294	CPSF6	94	77.470	Colobus_angolensis_palliatus
ENSOMEG00000009425	cpsf6	95	41.852	ENSCGRG00000017954	Cpsf7	77	57.803	Cricetulus_griseus_crigri
ENSOMEG00000009425	cpsf6	62	35.500	ENSCSEG00000001956	CPSF7	57	43.972	Cynoglossus_semilaevis
ENSOMEG00000009425	cpsf6	77	89.080	ENSCVAG00000014857	cpsf6	94	87.763	Cyprinodon_variegatus
ENSOMEG00000009425	cpsf6	67	35.749	ENSCVAG00000007392	CPSF7	81	43.448	Cyprinodon_variegatus
ENSOMEG00000009425	cpsf6	52	77.333	ENSDARG00000018618	cpsf6	52	84.429	Danio_rerio
ENSOMEG00000009425	cpsf6	65	54.688	ENSDNOG00000018517	CPSF7	84	51.977	Dasypus_novemcinctus
ENSOMEG00000009425	cpsf6	65	51.020	ENSETEG00000003765	CPSF7	67	48.603	Echinops_telfairi
ENSOMEG00000009425	cpsf6	58	61.379	ENSEASG00005008196	CPSF7	68	49.162	Equus_asinus_asinus
ENSOMEG00000009425	cpsf6	58	55.147	ENSECAG00000018521	CPSF7	91	51.977	Equus_caballus
ENSOMEG00000009425	cpsf6	65	54.688	ENSFCAG00000013677	CPSF7	91	51.977	Felis_catus
ENSOMEG00000009425	cpsf6	70	46.369	ENSFALG00000011927	CPSF7	76	54.651	Ficedula_albicollis
ENSOMEG00000009425	cpsf6	95	41.111	ENSFDAG00000003919	CPSF7	71	55.491	Fukomys_damarensis
ENSOMEG00000009425	cpsf6	53	80.464	ENSFHEG00000019693	cpsf6	53	82.667	Fundulus_heteroclitus
ENSOMEG00000009425	cpsf6	53	95.000	ENSGMOG00000012951	cpsf6	53	95.000	Gadus_morhua
ENSOMEG00000009425	cpsf6	62	52.747	ENSGALG00000040962	CPSF7	63	56.395	Gallus_gallus
ENSOMEG00000009425	cpsf6	94	71.273	ENSGAGG00000010228	CPSF6	94	78.558	Gopherus_agassizii
ENSOMEG00000009425	cpsf6	81	82.308	ENSGGOG00000008211	CPSF6	51	75.261	Gorilla_gorilla
ENSOMEG00000009425	cpsf6	88	36.089	ENSHGLG00000019090	-	77	55.491	Heterocephalus_glaber_female
ENSOMEG00000009425	cpsf6	95	40.293	ENSHGLG00100013933	-	78	55.491	Heterocephalus_glaber_male
ENSOMEG00000009425	cpsf6	67	54.922	ENSJJAG00000019390	Cpsf7	77	55.747	Jaculus_jaculus
ENSOMEG00000009425	cpsf6	56	41.259	ENSLBEG00000000947	CPSF7	80	40.594	Labrus_bergylta
ENSOMEG00000009425	cpsf6	93	33.209	ENSLACG00000005542	CPSF7	70	44.304	Latimeria_chalumnae
ENSOMEG00000009425	cpsf6	52	72.474	ENSLACG00000008625	CPSF6	51	73.519	Latimeria_chalumnae
ENSOMEG00000009425	cpsf6	67	88.304	ENSLOCG00000016190	cpsf6	67	89.474	Lepisosteus_oculatus
ENSOMEG00000009425	cpsf6	65	55.208	ENSLAFG00000032084	CPSF7	68	49.162	Loxodonta_africana
ENSOMEG00000009425	cpsf6	81	82.308	ENSMFAG00000045318	CPSF6	94	78.137	Macaca_fascicularis
ENSOMEG00000009425	cpsf6	65	54.167	ENSMFAG00000001401	CPSF7	68	49.162	Macaca_fascicularis
ENSOMEG00000009425	cpsf6	68	87.500	ENSMMUG00000002921	CPSF6	51	75.261	Macaca_mulatta
ENSOMEG00000009425	cpsf6	67	52.604	ENSMMUG00000015280	CPSF7	77	54.598	Macaca_mulatta
ENSOMEG00000009425	cpsf6	67	52.604	ENSMNEG00000029585	CPSF7	77	54.598	Macaca_nemestrina
ENSOMEG00000009425	cpsf6	81	83.784	ENSMNEG00000036311	CPSF6	94	78.137	Macaca_nemestrina
ENSOMEG00000009425	cpsf6	78	82.308	ENSMLEG00000003957	CPSF6	94	77.470	Mandrillus_leucophaeus
ENSOMEG00000009425	cpsf6	65	52.604	ENSMLEG00000031269	CPSF7	65	49.162	Mandrillus_leucophaeus
ENSOMEG00000009425	cpsf6	95	42.986	ENSMGAG00000004876	CPSF7	67	59.036	Meleagris_gallopavo
ENSOMEG00000009425	cpsf6	65	54.688	ENSMICG00000013788	CPSF7	68	48.603	Microcebus_murinus
ENSOMEG00000009425	cpsf6	81	83.784	ENSMICG00000007385	-	51	75.261	Microcebus_murinus
ENSOMEG00000009425	cpsf6	65	52.551	ENSMODG00000020364	CPSF7	69	48.603	Monodelphis_domestica
ENSOMEG00000009425	cpsf6	74	94.792	ENSMALG00000014908	cpsf6	80	94.624	Monopterus_albus
ENSOMEG00000009425	cpsf6	71	82.775	MGP_PahariEiJ_G0031253	Cpsf6	56	75.261	Mus_pahari
ENSOMEG00000009425	cpsf6	56	60.690	ENSMPUG00000014163	CPSF7	64	47.120	Mustela_putorius_furo
ENSOMEG00000009425	cpsf6	69	78.488	ENSMLUG00000023960	-	79	70.879	Myotis_lucifugus
ENSOMEG00000009425	cpsf6	67	53.125	ENSMLUG00000013278	CPSF7	77	55.172	Myotis_lucifugus
ENSOMEG00000009425	cpsf6	67	87.681	ENSMLUG00000028728	-	91	78.947	Myotis_lucifugus
ENSOMEG00000009425	cpsf6	65	54.167	ENSNLEG00000002529	CPSF7	62	49.162	Nomascus_leucogenys
ENSOMEG00000009425	cpsf6	81	83.784	ENSNLEG00000003798	CPSF6	94	78.137	Nomascus_leucogenys
ENSOMEG00000009425	cpsf6	65	52.308	ENSODEG00000002610	CPSF7	71	55.114	Octodon_degus
ENSOMEG00000009425	cpsf6	91	65.949	ENSOANG00000005944	CPSF6	50	70.260	Ornithorhynchus_anatinus
ENSOMEG00000009425	cpsf6	99	41.667	ENSOCUG00000024726	CPSF7	71	54.598	Oryctolagus_cuniculus
ENSOMEG00000009425	cpsf6	69	35.498	ENSORLG00000006495	CPSF7	72	39.773	Oryzias_latipes
ENSOMEG00000009425	cpsf6	100	96.931	ENSORLG00000013893	cpsf6	100	96.931	Oryzias_latipes
ENSOMEG00000009425	cpsf6	100	96.931	ENSORLG00020016593	cpsf6	100	96.931	Oryzias_latipes_hni
ENSOMEG00000009425	cpsf6	69	35.498	ENSORLG00020012657	CPSF7	72	39.773	Oryzias_latipes_hni
ENSOMEG00000009425	cpsf6	100	96.931	ENSORLG00015015558	cpsf6	100	96.931	Oryzias_latipes_hsok
ENSOMEG00000009425	cpsf6	69	35.498	ENSORLG00015011091	CPSF7	71	40.116	Oryzias_latipes_hsok
ENSOMEG00000009425	cpsf6	65	54.688	ENSOGAG00000027958	CPSF7	63	49.162	Otolemur_garnettii
ENSOMEG00000009425	cpsf6	65	53.125	ENSOARG00000012937	CPSF7	64	54.598	Ovis_aries
ENSOMEG00000009425	cpsf6	65	54.167	ENSPPAG00000028232	CPSF7	65	49.162	Pan_paniscus
ENSOMEG00000009425	cpsf6	65	54.688	ENSPPRG00000008538	CPSF7	71	55.172	Panthera_pardus
ENSOMEG00000009425	cpsf6	65	54.688	ENSPTIG00000021699	CPSF7	68	49.162	Panthera_tigris_altaica
ENSOMEG00000009425	cpsf6	81	82.308	ENSPTRG00000005205	CPSF6	51	75.261	Pan_troglodytes
ENSOMEG00000009425	cpsf6	65	54.167	ENSPTRG00000003742	CPSF7	68	49.162	Pan_troglodytes
ENSOMEG00000009425	cpsf6	74	90.984	ENSPANG00000011641	CPSF6	94	78.137	Papio_anubis
ENSOMEG00000009425	cpsf6	65	54.167	ENSPANG00000006037	CPSF7	66	47.120	Papio_anubis
ENSOMEG00000009425	cpsf6	95	81.905	ENSPKIG00000003081	-	94	83.206	Paramormyrops_kingsleyae
ENSOMEG00000009425	cpsf6	60	46.328	ENSPKIG00000018054	CPSF7	70	45.625	Paramormyrops_kingsleyae
ENSOMEG00000009425	cpsf6	67	54.688	ENSPEMG00000012648	Cpsf7	77	55.172	Peromyscus_maniculatus_bairdii
ENSOMEG00000009425	cpsf6	51	42.712	ENSPMAG00000008077	-	68	49.206	Petromyzon_marinus
ENSOMEG00000009425	cpsf6	65	52.551	ENSPCIG00000002551	CPSF7	84	51.667	Phascolarctos_cinereus
ENSOMEG00000009425	cpsf6	94	83.521	ENSPMEG00000001353	cpsf6	94	88.528	Poecilia_mexicana
ENSOMEG00000009425	cpsf6	65	54.167	ENSPPYG00000003188	CPSF7	68	49.162	Pongo_abelii
ENSOMEG00000009425	cpsf6	81	82.239	ENSPCOG00000024384	CPSF6	51	75.261	Propithecus_coquereli
ENSOMEG00000009425	cpsf6	65	54.688	ENSPCOG00000011976	CPSF7	68	48.603	Propithecus_coquereli
ENSOMEG00000009425	cpsf6	65	54.688	ENSPVAG00000010675	CPSF7	68	48.603	Pteropus_vampyrus
ENSOMEG00000009425	cpsf6	54	45.098	ENSPNAG00000015073	CPSF7	67	44.512	Pygocentrus_nattereri
ENSOMEG00000009425	cpsf6	52	82.292	ENSPNAG00000024098	CPSF6	94	87.023	Pygocentrus_nattereri
ENSOMEG00000009425	cpsf6	67	53.125	ENSRNOG00000020668	Cpsf7	77	55.747	Rattus_norvegicus
ENSOMEG00000009425	cpsf6	67	52.604	ENSRBIG00000031429	CPSF7	91	51.412	Rhinopithecus_bieti
ENSOMEG00000009425	cpsf6	81	82.308	ENSRBIG00000042827	CPSF6	51	75.261	Rhinopithecus_bieti
ENSOMEG00000009425	cpsf6	65	54.167	ENSRROG00000045009	CPSF7	68	49.162	Rhinopithecus_roxellana
ENSOMEG00000009425	cpsf6	81	83.784	ENSRROG00000042758	CPSF6	94	78.137	Rhinopithecus_roxellana
ENSOMEG00000009425	cpsf6	78	82.308	ENSSBOG00000010652	CPSF6	94	79.114	Saimiri_boliviensis_boliviensis
ENSOMEG00000009425	cpsf6	65	54.167	ENSSBOG00000018431	CPSF7	68	49.162	Saimiri_boliviensis_boliviensis
ENSOMEG00000009425	cpsf6	96	39.594	ENSSFOG00015010288	cpsf7	72	46.429	Scleropages_formosus
ENSOMEG00000009425	cpsf6	95	84.411	ENSSFOG00015015803	CPSF6	94	84.000	Scleropages_formosus
ENSOMEG00000009425	cpsf6	95	82.443	ENSSFOG00015001688	CPSF6	82	84.733	Scleropages_formosus
ENSOMEG00000009425	cpsf6	83	84.646	ENSSARG00000006743	CPSF6	80	83.399	Sorex_araneus
ENSOMEG00000009425	cpsf6	65	54.688	ENSSPUG00000019344	CPSF7	73	54.913	Sphenodon_punctatus
ENSOMEG00000009425	cpsf6	65	54.688	ENSSSCG00000013083	CPSF7	84	51.977	Sus_scrofa
ENSOMEG00000009425	cpsf6	62	49.438	ENSTGUG00000006513	CPSF7	71	53.488	Taeniopygia_guttata
ENSOMEG00000009425	cpsf6	61	54.167	ENSTTRG00000011085	CPSF7	70	55.172	Tursiops_truncatus
ENSOMEG00000009425	cpsf6	65	54.688	ENSUAMG00000017809	CPSF7	68	49.162	Ursus_americanus
ENSOMEG00000009425	cpsf6	67	54.688	ENSUMAG00000011825	CPSF7	77	55.172	Ursus_maritimus
ENSOMEG00000009425	cpsf6	65	54.688	ENSVVUG00000004939	CPSF7	84	51.977	Vulpes_vulpes
ENSOMEG00000009425	cpsf6	97	41.989	ENSXETG00000006715	cpsf7	54	48.023	Xenopus_tropicalis