EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSOMEG00000010006 (Gene tree)
Gene ID: 112145893
Gene Symbol: srl
Alias: -
Full Name: sarcalumenin
Gene Type: protein_coding
Species: Oryzias_melastigma
Status: putative
Strand: Minus strand
Length: 11844 bases
Position: chrNVQA01000010.1:11983102-11994945
Accession: 112145893
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOMEP00000008795	MMR_HSR1	PF01926.23	1.5e-08	1	1
ENSOMEP00000008820	MMR_HSR1	PF01926.23	1.5e-08	1	1
ENSOMEP00000008812	MMR_HSR1	PF01926.23	1.6e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOMET00000001849	-	1356	-	ENSOMEP00000008795	451 (aa)	-	-
ENSOMET00000001811	-	3100	-	ENSOMEP00000008820	482 (aa)	XP_024127140	UPI000CF7F34D
ENSOMET00000001827	-	3064	-	ENSOMEP00000008812	470 (aa)	XP_024127141	UPI000CF7E06D

Gene Model

Click here to download ENSOMEG00000010006's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOMEG00000010006's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSOMEG00000010006	srl	97	74.115	ENSOMEG00000005682	SRL	53	74.398
ENSOMEG00000010006	srl	82	33.244	ENSOMEG00000000506	ehd3	73	32.840
ENSOMEG00000010006	srl	86	31.443	ENSOMEG00000019329	ehd1a	70	31.443
ENSOMEG00000010006	srl	91	33.333	ENSOMEG00000001261	ehd2b	74	33.333
ENSOMEG00000010006	srl	91	30.000	ENSOMEG00000003975	-	75	30.435
ENSOMEG00000010006	srl	89	31.931	ENSOMEG00000019758	ehd4	71	31.931

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOMEG00000010006	srl	98	82.045	ENSG00000185739	SRL	99	82.558	Homo_sapiens
ENSOMEG00000010006	srl	100	95.541	ENSAPOG00000018093	srl	100	95.541	Acanthochromis_polyacanthus
ENSOMEG00000010006	srl	98	78.182	ENSAPOG00000012432	SRL	98	78.182	Acanthochromis_polyacanthus
ENSOMEG00000010006	srl	98	82.045	ENSAMEG00000010862	SRL	50	82.045	Ailuropoda_melanoleuca
ENSOMEG00000010006	srl	98	97.500	ENSACIG00000015799	srl	99	97.111	Amphilophus_citrinellus
ENSOMEG00000010006	srl	97	76.712	ENSACIG00000015419	SRL	98	76.712	Amphilophus_citrinellus
ENSOMEG00000010006	srl	96	96.544	ENSAOCG00000007574	srl	100	96.544	Amphiprion_ocellaris
ENSOMEG00000010006	srl	99	77.852	ENSAOCG00000017049	SRL	97	78.378	Amphiprion_ocellaris
ENSOMEG00000010006	srl	99	74.664	ENSAPEG00000006533	SRL	97	75.168	Amphiprion_percula
ENSOMEG00000010006	srl	100	95.859	ENSAPEG00000006911	srl	100	95.859	Amphiprion_percula
ENSOMEG00000010006	srl	100	95.445	ENSATEG00000024315	srl	100	95.445	Anabas_testudineus
ENSOMEG00000010006	srl	98	76.586	ENSATEG00000009643	SRL	53	76.805	Anabas_testudineus
ENSOMEG00000010006	srl	100	79.755	ENSACAG00000016380	SRL	89	80.533	Anolis_carolinensis
ENSOMEG00000010006	srl	100	96.480	ENSACLG00000027685	srl	100	95.436	Astatotilapia_calliptera
ENSOMEG00000010006	srl	97	75.610	ENSACLG00000024674	SRL	54	78.250	Astatotilapia_calliptera
ENSOMEG00000010006	srl	93	78.708	ENSAMXG00000038693	SRL	100	74.614	Astyanax_mexicanus
ENSOMEG00000010006	srl	98	92.727	ENSAMXG00000018789	srl	92	91.060	Astyanax_mexicanus
ENSOMEG00000010006	srl	97	83.371	ENSBTAG00000001078	SRL	57	81.898	Bos_taurus
ENSOMEG00000010006	srl	98	82.045	ENSCJAG00000019750	SRL	100	79.070	Callithrix_jacchus
ENSOMEG00000010006	srl	98	82.045	ENSCAFG00000019233	SRL	85	80.263	Canis_familiaris
ENSOMEG00000010006	srl	98	82.045	ENSCAFG00020025024	SRL	54	82.045	Canis_lupus_dingo
ENSOMEG00000010006	srl	97	83.371	ENSCHIG00000017927	SRL	57	81.898	Capra_hircus
ENSOMEG00000010006	srl	98	82.727	ENSTSYG00000007919	SRL	99	83.256	Carlito_syrichta
ENSOMEG00000010006	srl	98	82.955	ENSCPOG00000012643	SRL	100	79.873	Cavia_porcellus
ENSOMEG00000010006	srl	98	76.818	ENSCCAG00000032646	SRL	100	84.169	Cebus_capucinus
ENSOMEG00000010006	srl	98	82.045	ENSCATG00000032227	-	100	79.070	Cercocebus_atys
ENSOMEG00000010006	srl	98	83.182	ENSCLAG00000016242	SRL	100	80.085	Chinchilla_lanigera
ENSOMEG00000010006	srl	85	85.714	ENSCHOG00000001618	SRL	52	85.714	Choloepus_hoffmanni
ENSOMEG00000010006	srl	97	85.233	ENSCPBG00000026371	SRL	99	79.296	Chrysemys_picta_bellii
ENSOMEG00000010006	srl	91	60.827	ENSCING00000005231	-	95	59.813	Ciona_intestinalis
ENSOMEG00000010006	srl	98	82.045	ENSCANG00000035872	SRL	99	82.558	Colobus_angolensis_palliatus
ENSOMEG00000010006	srl	98	83.409	ENSCGRG00001016630	Srl	100	80.297	Cricetulus_griseus_chok1gshd
ENSOMEG00000010006	srl	98	83.409	ENSCGRG00000005458	Srl	100	80.297	Cricetulus_griseus_crigri
ENSOMEG00000010006	srl	100	94.681	ENSCSEG00000016151	srl	100	94.681	Cynoglossus_semilaevis
ENSOMEG00000010006	srl	98	75.730	ENSCSEG00000011866	SRL	94	73.448	Cynoglossus_semilaevis
ENSOMEG00000010006	srl	98	76.889	ENSCVAG00000022465	SRL	61	76.356	Cyprinodon_variegatus
ENSOMEG00000010006	srl	100	94.813	ENSCVAG00000003513	srl	100	94.813	Cyprinodon_variegatus
ENSOMEG00000010006	srl	84	78.646	ENSDARG00000112959	CABZ01072309.1	100	78.646	Danio_rerio
ENSOMEG00000010006	srl	98	92.727	ENSDARG00000104587	srl	100	89.419	Danio_rerio
ENSOMEG00000010006	srl	98	82.500	ENSDNOG00000011643	SRL	53	82.500	Dasypus_novemcinctus
ENSOMEG00000010006	srl	98	82.955	ENSDORG00000014807	Srl	100	80.085	Dipodomys_ordii
ENSOMEG00000010006	srl	82	65.508	ENSEBUG00000015937	srl	94	65.508	Eptatretus_burgeri
ENSOMEG00000010006	srl	97	82.460	ENSEASG00005000942	SRL	55	81.015	Equus_asinus_asinus
ENSOMEG00000010006	srl	97	82.460	ENSECAG00000024219	SRL	99	79.449	Equus_caballus
ENSOMEG00000010006	srl	100	86.653	ENSELUG00000015616	srl	100	86.653	Esox_lucius
ENSOMEG00000010006	srl	98	81.818	ENSFCAG00000022075	SRL	100	78.436	Felis_catus
ENSOMEG00000010006	srl	99	82.022	ENSFALG00000004328	SRL	63	82.727	Ficedula_albicollis
ENSOMEG00000010006	srl	98	83.409	ENSFDAG00000006199	SRL	100	80.508	Fukomys_damarensis
ENSOMEG00000010006	srl	100	95.436	ENSFHEG00000011239	srl	100	95.436	Fundulus_heteroclitus
ENSOMEG00000010006	srl	98	77.500	ENSFHEG00000011854	SRL	99	77.703	Fundulus_heteroclitus
ENSOMEG00000010006	srl	97	89.357	ENSGMOG00000014954	srl	100	91.410	Gadus_morhua
ENSOMEG00000010006	srl	99	82.472	ENSGALG00000038884	SRL	99	80.255	Gallus_gallus
ENSOMEG00000010006	srl	100	95.436	ENSGAFG00000000010	srl	100	95.436	Gambusia_affinis
ENSOMEG00000010006	srl	98	78.864	ENSGAFG00000016984	SRL	99	78.829	Gambusia_affinis
ENSOMEG00000010006	srl	97	92.683	ENSGACG00000011332	srl	100	95.165	Gasterosteus_aculeatus
ENSOMEG00000010006	srl	98	82.045	ENSGGOG00000011312	-	100	78.858	Gorilla_gorilla
ENSOMEG00000010006	srl	97	76.053	ENSHBUG00000015710	SRL	58	74.573	Haplochromis_burtoni
ENSOMEG00000010006	srl	100	96.480	ENSHBUG00000007581	srl	100	95.436	Haplochromis_burtoni
ENSOMEG00000010006	srl	98	83.182	ENSHGLG00000015271	SRL	100	80.085	Heterocephalus_glaber_female
ENSOMEG00000010006	srl	98	83.182	ENSHGLG00100019378	SRL	100	80.085	Heterocephalus_glaber_male
ENSOMEG00000010006	srl	100	94.492	ENSHCOG00000008687	srl	99	95.982	Hippocampus_comes
ENSOMEG00000010006	srl	98	75.221	ENSHCOG00000001012	SRL	50	75.221	Hippocampus_comes
ENSOMEG00000010006	srl	100	90.269	ENSIPUG00000012513	srl	100	90.269	Ictalurus_punctatus
ENSOMEG00000010006	srl	96	70.046	ENSIPUG00000011609	SRL	95	69.954	Ictalurus_punctatus
ENSOMEG00000010006	srl	98	82.955	ENSSTOG00000021151	-	100	79.661	Ictidomys_tridecemlineatus
ENSOMEG00000010006	srl	98	83.409	ENSJJAG00000016400	Srl	100	80.720	Jaculus_jaculus
ENSOMEG00000010006	srl	98	77.273	ENSKMAG00000019537	SRL	100	77.324	Kryptolebias_marmoratus
ENSOMEG00000010006	srl	98	94.915	ENSKMAG00000014115	srl	93	97.150	Kryptolebias_marmoratus
ENSOMEG00000010006	srl	98	75.730	ENSLBEG00000013811	SRL	96	75.955	Labrus_bergylta
ENSOMEG00000010006	srl	100	95.329	ENSLBEG00000026643	srl	100	95.329	Labrus_bergylta
ENSOMEG00000010006	srl	98	84.091	ENSLACG00000002825	SRL	98	83.937	Latimeria_chalumnae
ENSOMEG00000010006	srl	99	88.539	ENSLOCG00000002644	srl	95	88.539	Lepisosteus_oculatus
ENSOMEG00000010006	srl	98	82.045	ENSLAFG00000006329	SRL	50	82.045	Loxodonta_africana
ENSOMEG00000010006	srl	95	82.558	ENSMFAG00000037383	SRL	99	82.558	Macaca_fascicularis
ENSOMEG00000010006	srl	98	82.045	ENSMNEG00000019236	-	95	80.710	Macaca_nemestrina
ENSOMEG00000010006	srl	96	74.058	ENSMLEG00000032156	SRL	100	72.727	Mandrillus_leucophaeus
ENSOMEG00000010006	srl	98	95.909	ENSMAMG00000023322	srl	96	95.354	Mastacembelus_armatus
ENSOMEG00000010006	srl	98	75.930	ENSMAMG00000013756	SRL	53	76.432	Mastacembelus_armatus
ENSOMEG00000010006	srl	100	96.480	ENSMZEG00005004548	srl	100	95.436	Maylandia_zebra
ENSOMEG00000010006	srl	97	75.831	ENSMZEG00005004010	SRL	59	74.359	Maylandia_zebra
ENSOMEG00000010006	srl	99	82.472	ENSMGAG00000009342	SRL	96	83.641	Meleagris_gallopavo
ENSOMEG00000010006	srl	98	82.727	ENSMICG00000032307	SRL	100	79.493	Microcebus_murinus
ENSOMEG00000010006	srl	98	82.727	ENSMOCG00000008208	Srl	100	79.449	Microtus_ochrogaster
ENSOMEG00000010006	srl	98	95.227	ENSMMOG00000013970	srl	100	94.667	Mola_mola
ENSOMEG00000010006	srl	98	74.454	ENSMMOG00000021572	SRL	100	74.454	Mola_mola
ENSOMEG00000010006	srl	97	84.055	ENSMODG00000016380	-	50	83.900	Monodelphis_domestica
ENSOMEG00000010006	srl	93	78.043	ENSMALG00000000670	SRL	98	78.043	Monopterus_albus
ENSOMEG00000010006	srl	100	94.043	ENSMALG00000005039	srl	100	94.043	Monopterus_albus
ENSOMEG00000010006	srl	98	83.864	MGP_CAROLIEiJ_G0020400	Srl	100	81.144	Mus_caroli
ENSOMEG00000010006	srl	98	83.864	ENSMUSG00000022519	Srl	100	81.144	Mus_musculus
ENSOMEG00000010006	srl	98	83.864	MGP_SPRETEiJ_G0021294	Srl	100	81.144	Mus_spretus
ENSOMEG00000010006	srl	98	82.045	ENSMPUG00000015025	SRL	55	80.710	Mustela_putorius_furo
ENSOMEG00000010006	srl	98	82.727	ENSMLUG00000030733	SRL	57	81.596	Myotis_lucifugus
ENSOMEG00000010006	srl	98	83.636	ENSNGAG00000019741	Srl	100	80.720	Nannospalax_galili
ENSOMEG00000010006	srl	100	96.391	ENSNBRG00000023775	srl	100	95.319	Neolamprologus_brichardi
ENSOMEG00000010006	srl	97	75.610	ENSNBRG00000002422	SRL	57	75.455	Neolamprologus_brichardi
ENSOMEG00000010006	srl	96	75.388	ENSNLEG00000029051	SRL	100	73.573	Nomascus_leucogenys
ENSOMEG00000010006	srl	98	76.818	ENSOPRG00000000477	-	52	76.818	Ochotona_princeps
ENSOMEG00000010006	srl	98	83.409	ENSODEG00000013256	SRL	100	80.297	Octodon_degus
ENSOMEG00000010006	srl	100	96.480	ENSONIG00000005192	srl	100	95.436	Oreochromis_niloticus
ENSOMEG00000010006	srl	97	75.399	ENSORLG00000015064	SRL	97	75.395	Oryzias_latipes
ENSOMEG00000010006	srl	100	98.755	ENSORLG00000008291	srl	97	98.755	Oryzias_latipes
ENSOMEG00000010006	srl	100	99.170	ENSORLG00020019784	srl	85	99.170	Oryzias_latipes_hni
ENSOMEG00000010006	srl	97	75.626	ENSORLG00020018173	SRL	97	75.621	Oryzias_latipes_hni
ENSOMEG00000010006	srl	97	75.626	ENSORLG00015019063	SRL	97	75.621	Oryzias_latipes_hsok
ENSOMEG00000010006	srl	100	98.755	ENSORLG00015009342	srl	97	98.755	Oryzias_latipes_hsok
ENSOMEG00000010006	srl	98	82.273	ENSOGAG00000029266	SRL	54	82.273	Otolemur_garnettii
ENSOMEG00000010006	srl	97	83.371	ENSOARG00000003074	SRL	55	83.371	Ovis_aries
ENSOMEG00000010006	srl	98	82.045	ENSPPAG00000024919	-	99	82.558	Pan_paniscus
ENSOMEG00000010006	srl	98	81.818	ENSPPRG00000010274	SRL	99	82.326	Panthera_pardus
ENSOMEG00000010006	srl	98	81.818	ENSPTIG00000015162	SRL	99	82.326	Panthera_tigris_altaica
ENSOMEG00000010006	srl	98	82.045	ENSPTRG00000007712	SRL	99	82.558	Pan_troglodytes
ENSOMEG00000010006	srl	98	82.045	ENSPANG00000013804	SRL	97	80.710	Papio_anubis
ENSOMEG00000010006	srl	98	92.500	ENSPKIG00000006405	srl	100	89.897	Paramormyrops_kingsleyae
ENSOMEG00000010006	srl	100	78.390	ENSPKIG00000024974	SRL	94	78.390	Paramormyrops_kingsleyae
ENSOMEG00000010006	srl	97	82.460	ENSPSIG00000008586	SRL	50	81.153	Pelodiscus_sinensis
ENSOMEG00000010006	srl	98	95.227	ENSPMGG00000021081	srl	97	94.027	Periophthalmus_magnuspinnatus
ENSOMEG00000010006	srl	98	76.591	ENSPMGG00000023505	-	99	76.591	Periophthalmus_magnuspinnatus
ENSOMEG00000010006	srl	98	82.955	ENSPEMG00000015842	Srl	100	80.085	Peromyscus_maniculatus_bairdii
ENSOMEG00000010006	srl	93	67.890	ENSPMAG00000004786	srl	99	68.421	Petromyzon_marinus
ENSOMEG00000010006	srl	97	83.599	ENSPCIG00000012128	SRL	98	82.444	Phascolarctos_cinereus
ENSOMEG00000010006	srl	100	95.643	ENSPFOG00000011408	srl	96	95.259	Poecilia_formosa
ENSOMEG00000010006	srl	98	77.727	ENSPLAG00000002932	SRL	99	77.703	Poecilia_latipinna
ENSOMEG00000010006	srl	98	96.591	ENSPLAG00000008017	srl	98	95.778	Poecilia_latipinna
ENSOMEG00000010006	srl	100	95.532	ENSPMEG00000006745	srl	98	95.778	Poecilia_mexicana
ENSOMEG00000010006	srl	98	75.938	ENSPMEG00000005890	SRL	61	74.946	Poecilia_mexicana
ENSOMEG00000010006	srl	100	95.643	ENSPREG00000007751	srl	100	95.787	Poecilia_reticulata
ENSOMEG00000010006	srl	98	78.409	ENSPREG00000000315	SRL	100	77.951	Poecilia_reticulata
ENSOMEG00000010006	srl	93	84.248	ENSPPYG00000007053	SRL	98	84.248	Pongo_abelii
ENSOMEG00000010006	srl	97	83.144	ENSPCAG00000003378	-	50	82.993	Procavia_capensis
ENSOMEG00000010006	srl	98	82.727	ENSPCOG00000023135	SRL	99	83.256	Propithecus_coquereli
ENSOMEG00000010006	srl	98	82.500	ENSPVAG00000006586	SRL	54	82.500	Pteropus_vampyrus
ENSOMEG00000010006	srl	100	96.273	ENSPNYG00000001200	srl	100	95.228	Pundamilia_nyererei
ENSOMEG00000010006	srl	97	75.831	ENSPNYG00000003423	SRL	58	74.359	Pundamilia_nyererei
ENSOMEG00000010006	srl	98	92.273	ENSPNAG00000023106	srl	100	89.834	Pygocentrus_nattereri
ENSOMEG00000010006	srl	98	75.676	ENSPNAG00000007361	-	91	76.190	Pygocentrus_nattereri
ENSOMEG00000010006	srl	98	83.409	ENSRNOG00000005269	Srl	50	81.718	Rattus_norvegicus
ENSOMEG00000010006	srl	98	82.045	ENSRBIG00000042358	SRL	50	80.396	Rhinopithecus_bieti
ENSOMEG00000010006	srl	98	82.045	ENSSBOG00000029273	SRL	100	79.070	Saimiri_boliviensis_boliviensis
ENSOMEG00000010006	srl	97	83.827	ENSSHAG00000011715	-	53	80.128	Sarcophilus_harrisii
ENSOMEG00000010006	srl	98	93.182	ENSSFOG00015009773	srl	100	90.496	Scleropages_formosus
ENSOMEG00000010006	srl	98	77.273	ENSSFOG00015021327	SRL	51	75.271	Scleropages_formosus
ENSOMEG00000010006	srl	98	75.771	ENSSMAG00000002232	SRL	50	75.824	Scophthalmus_maximus
ENSOMEG00000010006	srl	100	94.692	ENSSMAG00000016274	srl	100	94.692	Scophthalmus_maximus
ENSOMEG00000010006	srl	98	77.827	ENSSDUG00000009161	SRL	99	78.222	Seriola_dumerili
ENSOMEG00000010006	srl	98	96.591	ENSSDUG00000010808	srl	98	96.622	Seriola_dumerili
ENSOMEG00000010006	srl	98	78.022	ENSSLDG00000014601	SRL	100	78.509	Seriola_lalandi_dorsalis
ENSOMEG00000010006	srl	100	95.643	ENSSLDG00000022024	srl	100	95.643	Seriola_lalandi_dorsalis
ENSOMEG00000010006	srl	98	82.313	ENSSPUG00000016859	SRL	99	81.111	Sphenodon_punctatus
ENSOMEG00000010006	srl	100	95.661	ENSSPAG00000019105	srl	100	95.661	Stegastes_partitus
ENSOMEG00000010006	srl	99	78.475	ENSSPAG00000014254	SRL	99	78.475	Stegastes_partitus
ENSOMEG00000010006	srl	97	82.688	ENSSSCG00000007949	SRL	98	82.766	Sus_scrofa
ENSOMEG00000010006	srl	80	85.912	ENSTGUG00000016121	-	100	85.912	Taeniopygia_guttata
ENSOMEG00000010006	srl	99	82.247	ENSTGUG00000003951	-	98	82.247	Taeniopygia_guttata
ENSOMEG00000010006	srl	93	78.520	ENSTRUG00000013310	SRL	55	78.520	Takifugu_rubripes
ENSOMEG00000010006	srl	100	95.319	ENSTRUG00000006005	srl	100	95.319	Takifugu_rubripes
ENSOMEG00000010006	srl	100	94.255	ENSTNIG00000009739	srl	100	94.255	Tetraodon_nigroviridis
ENSOMEG00000010006	srl	98	82.045	ENSUAMG00000005701	SRL	55	82.045	Ursus_americanus
ENSOMEG00000010006	srl	98	82.045	ENSUMAG00000002574	SRL	55	81.900	Ursus_maritimus
ENSOMEG00000010006	srl	98	82.045	ENSVVUG00000016331	-	50	80.176	Vulpes_vulpes
ENSOMEG00000010006	srl	98	81.591	ENSXETG00000017313	srl	98	81.591	Xenopus_tropicalis
ENSOMEG00000010006	srl	94	96.927	ENSXCOG00000010424	srl	97	96.927	Xiphophorus_couchianus
ENSOMEG00000010006	srl	98	78.636	ENSXCOG00000014584	SRL	100	77.827	Xiphophorus_couchianus
ENSOMEG00000010006	srl	98	76.159	ENSXMAG00000027598	SRL	63	75.594	Xiphophorus_maculatus
ENSOMEG00000010006	srl	100	95.436	ENSXMAG00000004625	srl	95	95.436	Xiphophorus_maculatus