EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSOMEG00000010647 (Gene tree)
Gene ID
112138401
Gene Symbol
cpsf3
Alias
-
Full Name
cleavage and polyadenylation specific factor 3
Gene Type
protein_coding
Species
Oryzias_melastigma
Status
putative
Strand
Minus strand
Length
17534 bases
Position
chrNVQA01000856.1:22348-39881
Accession
112138401
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSOMEP00000009447CPSF73-100_CPF11718.82.4e-5011
ENSOMEP00000009447Beta-CaspPF10996.81e-3311
ENSOMEP00000009447Lactamase_BPF00753.272.4e-1811
ENSOMEP00000009447RMMBLPF07521.122e-2111
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSOMET00000000753-4204-ENSOMEP00000009447717 (aa)XP_024116728UPI000CF8303A
Gene Model
Click here to download ENSOMEG00000010647's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSOMEG00000010647's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSOMEG00000010647cpsf36239.427ENSOMEG00000018159ints117539.427
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSOMEG00000010647cpsf39483.700ENSG00000119203CPSF310096.324Homo_sapiens
ENSOMEG00000010647cpsf39693.440ENSAPOG00000022087cpsf310093.440Acanthochromis_polyacanthus
ENSOMEG00000010647cpsf37196.252ENSAPOG00000012241CPSF39196.252Acanthochromis_polyacanthus
ENSOMEG00000010647cpsf39483.847ENSAMEG00000008493CPSF39983.847Ailuropoda_melanoleuca
ENSOMEG00000010647cpsf38784.897ENSACIG00000023663CPSF39978.810Amphilophus_citrinellus
ENSOMEG00000010647cpsf38787.639ENSACIG00000009846cpsf310081.214Amphilophus_citrinellus
ENSOMEG00000010647cpsf39693.294ENSAOCG00000022056cpsf310093.294Amphiprion_ocellaris
ENSOMEG00000010647cpsf39686.667ENSAOCG00000010077CPSF310086.667Amphiprion_ocellaris
ENSOMEG00000010647cpsf39686.667ENSAPEG00000021167CPSF310086.667Amphiprion_percula
ENSOMEG00000010647cpsf39693.440ENSAPEG00000019526cpsf310093.440Amphiprion_percula
ENSOMEG00000010647cpsf39582.703ENSATEG00000014525CPSF39982.703Anabas_testudineus
ENSOMEG00000010647cpsf39592.398ENSATEG00000003959cpsf39992.398Anabas_testudineus
ENSOMEG00000010647cpsf39383.284ENSAPLG00000006941CPSF39883.284Anas_platyrhynchos
ENSOMEG00000010647cpsf38881.861ENSACAG00000001759CPSF39981.861Anolis_carolinensis
ENSOMEG00000010647cpsf39478.855ENSANAG00000031254CPSF39979.429Aotus_nancymaae
ENSOMEG00000010647cpsf38785.215ENSACLG00000018846CPSF39985.215Astatotilapia_calliptera
ENSOMEG00000010647cpsf39689.045ENSACLG00000014484cpsf39992.598Astatotilapia_calliptera
ENSOMEG00000010647cpsf39586.192ENSAMXG00000004786cpsf39986.192Astyanax_mexicanus
ENSOMEG00000010647cpsf39483.847ENSBTAG00000019735CPSF39983.847Bos_taurus
ENSOMEG00000010647cpsf38656.782WBGene00013460cpsf-38956.782Caenorhabditis_elegans
ENSOMEG00000010647cpsf39483.700ENSCJAG00000006276CPSF39983.700Callithrix_jacchus
ENSOMEG00000010647cpsf39483.847ENSCAFG00000003375CPSF39583.847Canis_familiaris
ENSOMEG00000010647cpsf38686.731ENSCAFG00020026799CPSF39986.731Canis_lupus_dingo
ENSOMEG00000010647cpsf39483.847ENSCHIG00000013973CPSF39983.847Capra_hircus
ENSOMEG00000010647cpsf39483.700ENSTSYG00000002967CPSF39983.700Carlito_syrichta
ENSOMEG00000010647cpsf39283.910ENSCAPG00000013851CPSF39983.910Cavia_aperea
ENSOMEG00000010647cpsf39483.847ENSCPOG00000011299CPSF39983.847Cavia_porcellus
ENSOMEG00000010647cpsf39483.700ENSCCAG00000036730CPSF39983.784Cebus_capucinus
ENSOMEG00000010647cpsf39482.526ENSCATG00000014770CPSF39989.810Cercocebus_atys
ENSOMEG00000010647cpsf39483.847ENSCLAG00000002727CPSF39983.847Chinchilla_lanigera
ENSOMEG00000010647cpsf39475.918ENSCSAG00000007125CPSF39975.918Chlorocebus_sabaeus
ENSOMEG00000010647cpsf381100.000ENSCHOG00000000180CPSF38560.035Choloepus_hoffmanni
ENSOMEG00000010647cpsf39583.454ENSCPBG00000014074CPSF39983.454Chrysemys_picta_bellii
ENSOMEG00000010647cpsf39467.647ENSCING00000007214-9767.647Ciona_intestinalis
ENSOMEG00000010647cpsf39475.000ENSCANG00000034435CPSF39975.000Colobus_angolensis_palliatus
ENSOMEG00000010647cpsf39483.554ENSCGRG00001013134Cpsf39983.554Cricetulus_griseus_chok1gshd
ENSOMEG00000010647cpsf39483.554ENSCGRG00000018319Cpsf39983.554Cricetulus_griseus_crigri
ENSOMEG00000010647cpsf39585.631ENSCSEG00000002021CPSF39985.736Cynoglossus_semilaevis
ENSOMEG00000010647cpsf39587.355ENSCVAG00000015067CPSF39987.355Cyprinodon_variegatus
ENSOMEG00000010647cpsf39685.217ENSDARG00000027649cpsf310085.217Danio_rerio
ENSOMEG00000010647cpsf39482.845ENSDNOG00000008940CPSF39582.845Dasypus_novemcinctus
ENSOMEG00000010647cpsf39184.923ENSDORG00000014263Cpsf39984.923Dipodomys_ordii
ENSOMEG00000010647cpsf39566.520FBgn0261065Cpsf739966.520Drosophila_melanogaster
ENSOMEG00000010647cpsf39172.923ENSETEG00000003893CPSF39972.923Echinops_telfairi
ENSOMEG00000010647cpsf39574.011ENSEBUG00000009018cpsf39974.011Eptatretus_burgeri
ENSOMEG00000010647cpsf39483.847ENSEASG00005003970CPSF39983.847Equus_asinus_asinus
ENSOMEG00000010647cpsf39483.847ENSECAG00000019911CPSF39689.226Equus_caballus
ENSOMEG00000010647cpsf39469.457ENSEEUG00000015422CPSF39969.457Erinaceus_europaeus
ENSOMEG00000010647cpsf39688.099ENSELUG00000013775cpsf39988.099Esox_lucius
ENSOMEG00000010647cpsf39483.847ENSFCAG00000007852CPSF39983.847Felis_catus
ENSOMEG00000010647cpsf39083.153ENSFALG00000006572CPSF310083.153Ficedula_albicollis
ENSOMEG00000010647cpsf39483.407ENSFDAG00000006317CPSF39983.407Fukomys_damarensis
ENSOMEG00000010647cpsf35665.610ENSFHEG00000012186CPSF310065.610Fundulus_heteroclitus
ENSOMEG00000010647cpsf39692.274ENSFHEG00000014774cpsf310092.274Fundulus_heteroclitus
ENSOMEG00000010647cpsf39688.389ENSGMOG00000003157cpsf310088.389Gadus_morhua
ENSOMEG00000010647cpsf39583.309ENSGALG00000016424CPSF39983.309Gallus_gallus
ENSOMEG00000010647cpsf39687.536ENSGAFG00000008016CPSF310087.536Gambusia_affinis
ENSOMEG00000010647cpsf38790.240ENSGAFG00000019449cpsf310083.819Gambusia_affinis
ENSOMEG00000010647cpsf36479.015ENSGAGG00000025583CPSF39379.015Gopherus_agassizii
ENSOMEG00000010647cpsf39481.609ENSGGOG00000001757CPSF39195.931Gorilla_gorilla
ENSOMEG00000010647cpsf39692.420ENSHBUG00000001188cpsf310092.420Haplochromis_burtoni
ENSOMEG00000010647cpsf35679.012ENSHBUG00000014332CPSF310079.012Haplochromis_burtoni
ENSOMEG00000010647cpsf39483.407ENSHGLG00000000666CPSF39983.407Heterocephalus_glaber_female
ENSOMEG00000010647cpsf39483.407ENSHGLG00100007765CPSF39983.407Heterocephalus_glaber_male
ENSOMEG00000010647cpsf39585.465ENSHCOG00000015957CPSF39985.465Hippocampus_comes
ENSOMEG00000010647cpsf39591.082ENSHCOG00000007251cpsf39991.082Hippocampus_comes
ENSOMEG00000010647cpsf39586.192ENSIPUG00000023488cpsf39986.192Ictalurus_punctatus
ENSOMEG00000010647cpsf39483.554ENSSTOG00000004476CPSF39983.554Ictidomys_tridecemlineatus
ENSOMEG00000010647cpsf39583.309ENSJJAG00000023415Cpsf39983.309Jaculus_jaculus
ENSOMEG00000010647cpsf39692.274ENSKMAG00000002806cpsf310092.274Kryptolebias_marmoratus
ENSOMEG00000010647cpsf39586.337ENSKMAG00000007317CPSF39986.337Kryptolebias_marmoratus
ENSOMEG00000010647cpsf39583.942ENSLBEG00000020569cpsf39683.942Labrus_bergylta
ENSOMEG00000010647cpsf39287.386ENSLBEG00000013492CPSF39987.386Labrus_bergylta
ENSOMEG00000010647cpsf35286.059ENSLBEG00000015018-9986.059Labrus_bergylta
ENSOMEG00000010647cpsf39678.261ENSLACG00000008308CPSF39978.261Latimeria_chalumnae
ENSOMEG00000010647cpsf39686.580ENSLOCG00000016823cpsf310086.580Lepisosteus_oculatus
ENSOMEG00000010647cpsf39483.038ENSLAFG00000009467CPSF39983.038Loxodonta_africana
ENSOMEG00000010647cpsf39483.700ENSMFAG00000001339CPSF39593.154Macaca_fascicularis
ENSOMEG00000010647cpsf38983.256ENSMMUG00000018038CPSF39293.154Macaca_mulatta
ENSOMEG00000010647cpsf38694.841ENSMNEG00000039447CPSF39994.841Macaca_nemestrina
ENSOMEG00000010647cpsf39483.700ENSMLEG00000026825CPSF39395.726Mandrillus_leucophaeus
ENSOMEG00000010647cpsf39690.816ENSMAMG00000003076cpsf310090.816Mastacembelus_armatus
ENSOMEG00000010647cpsf38784.127ENSMAMG00000008835CPSF39978.261Mastacembelus_armatus
ENSOMEG00000010647cpsf39686.812ENSMZEG00005006258CPSF310086.812Maylandia_zebra
ENSOMEG00000010647cpsf39692.420ENSMZEG00005014358cpsf310092.420Maylandia_zebra
ENSOMEG00000010647cpsf39283.658ENSMGAG00000013995CPSF310083.658Meleagris_gallopavo
ENSOMEG00000010647cpsf35173.262ENSMAUG00000000166Cpsf39973.262Mesocricetus_auratus
ENSOMEG00000010647cpsf39479.209ENSMICG00000002363CPSF39979.209Microcebus_murinus
ENSOMEG00000010647cpsf39481.204ENSMOCG00000020067Cpsf39981.204Microtus_ochrogaster
ENSOMEG00000010647cpsf38985.023ENSMMOG00000018212CPSF39885.023Mola_mola
ENSOMEG00000010647cpsf37670.238ENSMMOG00000011923CPSF38476.071Mola_mola
ENSOMEG00000010647cpsf39482.413ENSMODG00000014703CPSF39982.413Monodelphis_domestica
ENSOMEG00000010647cpsf39692.711ENSMALG00000016416cpsf310092.711Monopterus_albus
ENSOMEG00000010647cpsf38882.835ENSMALG00000011474CPSF39982.835Monopterus_albus
ENSOMEG00000010647cpsf39483.847MGP_CAROLIEiJ_G0017640Cpsf39983.847Mus_caroli
ENSOMEG00000010647cpsf39483.847ENSMUSG00000054309Cpsf39695.763Mus_musculus
ENSOMEG00000010647cpsf39483.700MGP_PahariEiJ_G0029397Cpsf39983.700Mus_pahari
ENSOMEG00000010647cpsf39483.847MGP_SPRETEiJ_G0018481Cpsf39983.847Mus_spretus
ENSOMEG00000010647cpsf39483.724ENSMPUG00000013213CPSF39983.724Mustela_putorius_furo
ENSOMEG00000010647cpsf39483.578ENSMLUG00000010636CPSF39983.578Myotis_lucifugus
ENSOMEG00000010647cpsf39483.554ENSNGAG00000019836Cpsf39983.554Nannospalax_galili
ENSOMEG00000010647cpsf39691.983ENSNBRG00000004770cpsf310091.983Neolamprologus_brichardi
ENSOMEG00000010647cpsf38785.215ENSNBRG00000010525CPSF39985.215Neolamprologus_brichardi
ENSOMEG00000010647cpsf39483.700ENSNLEG00000013359CPSF39195.931Nomascus_leucogenys
ENSOMEG00000010647cpsf39454.185ENSMEUG00000013117-9954.185Notamacropus_eugenii
ENSOMEG00000010647cpsf39475.220ENSOPRG00000008902CPSF39975.220Ochotona_princeps
ENSOMEG00000010647cpsf39483.994ENSODEG00000003129CPSF39983.994Octodon_degus
ENSOMEG00000010647cpsf39691.983ENSONIG00000018812cpsf310091.983Oreochromis_niloticus
ENSOMEG00000010647cpsf37881.139ENSOANG00000008577CPSF39981.139Ornithorhynchus_anatinus
ENSOMEG00000010647cpsf39483.847ENSOCUG00000003728CPSF39983.847Oryctolagus_cuniculus
ENSOMEG00000010647cpsf39698.397ENSORLG00000018854cpsf310098.397Oryzias_latipes
ENSOMEG00000010647cpsf39698.251ENSORLG00020013331cpsf310098.251Oryzias_latipes_hni
ENSOMEG00000010647cpsf39698.397ENSORLG00015011017cpsf310098.397Oryzias_latipes_hsok
ENSOMEG00000010647cpsf39474.156ENSOGAG00000001680CPSF39974.156Otolemur_garnettii
ENSOMEG00000010647cpsf39483.847ENSOARG00000015073CPSF39983.847Ovis_aries
ENSOMEG00000010647cpsf39483.700ENSPPAG00000042457CPSF39195.931Pan_paniscus
ENSOMEG00000010647cpsf39483.554ENSPPRG00000016790CPSF39983.700Panthera_pardus
ENSOMEG00000010647cpsf39483.923ENSPTIG00000003920CPSF39984.071Panthera_tigris_altaica
ENSOMEG00000010647cpsf39483.700ENSPTRG00000011638CPSF39195.931Pan_troglodytes
ENSOMEG00000010647cpsf39483.847ENSPANG00000016798CPSF39593.154Papio_anubis
ENSOMEG00000010647cpsf39686.377ENSPKIG00000023646cpsf310086.377Paramormyrops_kingsleyae
ENSOMEG00000010647cpsf39482.698ENSPSIG00000016144CPSF39982.698Pelodiscus_sinensis
ENSOMEG00000010647cpsf38784.320ENSPMGG00000006141-9984.320Periophthalmus_magnuspinnatus
ENSOMEG00000010647cpsf35679.012ENSPMGG00000015311CPSF310079.012Periophthalmus_magnuspinnatus
ENSOMEG00000010647cpsf39483.407ENSPEMG00000017668Cpsf39983.554Peromyscus_maniculatus_bairdii
ENSOMEG00000010647cpsf37688.073ENSPMAG00000004841cpsf310088.073Petromyzon_marinus
ENSOMEG00000010647cpsf39283.308ENSPCIG00000009823CPSF39883.896Phascolarctos_cinereus
ENSOMEG00000010647cpsf39692.420ENSPFOG00000015922cpsf310092.420Poecilia_formosa
ENSOMEG00000010647cpsf39687.246ENSPFOG00000010418-10087.246Poecilia_formosa
ENSOMEG00000010647cpsf39692.420ENSPLAG00000000882cpsf310092.420Poecilia_latipinna
ENSOMEG00000010647cpsf35680.988ENSPLAG00000021300-10080.988Poecilia_latipinna
ENSOMEG00000010647cpsf39692.566ENSPMEG00000018309cpsf310092.566Poecilia_mexicana
ENSOMEG00000010647cpsf38790.240ENSPREG00000014875cpsf310083.819Poecilia_reticulata
ENSOMEG00000010647cpsf39682.464ENSPREG00000004482CPSF310082.464Poecilia_reticulata
ENSOMEG00000010647cpsf39479.589ENSPPYG00000012666CPSF39979.589Pongo_abelii
ENSOMEG00000010647cpsf38064.098ENSPCAG00000015042CPSF38864.098Procavia_capensis
ENSOMEG00000010647cpsf38484.536ENSPCOG00000023016CPSF39984.536Propithecus_coquereli
ENSOMEG00000010647cpsf39484.018ENSPVAG00000005324CPSF39984.018Pteropus_vampyrus
ENSOMEG00000010647cpsf39692.420ENSPNYG00000004405cpsf310092.420Pundamilia_nyererei
ENSOMEG00000010647cpsf37590.221ENSPNYG00000021047CPSF39090.221Pundamilia_nyererei
ENSOMEG00000010647cpsf39586.047ENSPNAG00000023060cpsf39986.047Pygocentrus_nattereri
ENSOMEG00000010647cpsf39483.847ENSRNOG00000052418Cpsf39983.847Rattus_norvegicus
ENSOMEG00000010647cpsf39478.561ENSRBIG00000041615CPSF39979.535Rhinopithecus_bieti
ENSOMEG00000010647cpsf39483.700ENSRROG00000033792CPSF39983.700Rhinopithecus_roxellana
ENSOMEG00000010647cpsf38640.586YLR277CYSH19140.586Saccharomyces_cerevisiae
ENSOMEG00000010647cpsf39280.301ENSSBOG00000027263CPSF39780.301Saimiri_boliviensis_boliviensis
ENSOMEG00000010647cpsf39483.407ENSSHAG00000007024CPSF39983.407Sarcophilus_harrisii
ENSOMEG00000010647cpsf39686.087ENSSFOG00015002108cpsf310086.087Scleropages_formosus
ENSOMEG00000010647cpsf39286.970ENSSMAG00000020534CPSF39786.970Scophthalmus_maximus
ENSOMEG00000010647cpsf39586.773ENSSDUG00000018498CPSF39986.773Seriola_dumerili
ENSOMEG00000010647cpsf39691.691ENSSDUG00000002828cpsf39791.691Seriola_dumerili
ENSOMEG00000010647cpsf39586.773ENSSLDG00000005234CPSF39986.773Seriola_lalandi_dorsalis
ENSOMEG00000010647cpsf39691.837ENSSLDG00000008469cpsf39791.837Seriola_lalandi_dorsalis
ENSOMEG00000010647cpsf38482.364ENSSARG00000005186CPSF38982.364Sorex_araneus
ENSOMEG00000010647cpsf39282.661ENSSPUG00000015525CPSF39782.661Sphenodon_punctatus
ENSOMEG00000010647cpsf39586.919ENSSPAG00000002906CPSF39986.919Stegastes_partitus
ENSOMEG00000010647cpsf39692.711ENSSPAG00000018579cpsf310092.711Stegastes_partitus
ENSOMEG00000010647cpsf39483.847ENSSSCG00000020799CPSF39983.847Sus_scrofa
ENSOMEG00000010647cpsf39583.480ENSTGUG00000013016CPSF310083.480Taeniopygia_guttata
ENSOMEG00000010647cpsf35671.675ENSTRUG00000013905CPSF39971.675Takifugu_rubripes
ENSOMEG00000010647cpsf39690.511ENSTRUG00000007030cpsf39890.511Takifugu_rubripes
ENSOMEG00000010647cpsf38090.110ENSTBEG00000002707CPSF38490.110Tupaia_belangeri
ENSOMEG00000010647cpsf38372.397ENSTTRG00000000861CPSF38772.397Tursiops_truncatus
ENSOMEG00000010647cpsf39284.091ENSUAMG00000007535CPSF39584.091Ursus_americanus
ENSOMEG00000010647cpsf38983.411ENSUMAG00000003676CPSF39489.068Ursus_maritimus
ENSOMEG00000010647cpsf38884.069ENSVPAG00000008041CPSF310084.069Vicugna_pacos
ENSOMEG00000010647cpsf39483.847ENSVVUG00000002194CPSF39983.847Vulpes_vulpes
ENSOMEG00000010647cpsf39682.609ENSXETG00000008263cpsf39982.609Xenopus_tropicalis
ENSOMEG00000010647cpsf39691.837ENSXCOG00000019695cpsf310091.837Xiphophorus_couchianus
ENSOMEG00000010647cpsf35179.839ENSXCOG00000000957-8779.839Xiphophorus_couchianus
ENSOMEG00000010647cpsf39692.420ENSXMAG00000009784cpsf310092.420Xiphophorus_maculatus
ENSOMEG00000010647cpsf39687.826ENSXMAG00000027291CPSF310087.826Xiphophorus_maculatus

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