EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSOMEG00000010713 (Gene tree)
Gene ID: 112155889
Gene Symbol: polr2a
Alias: -
Full Name: polymerase (RNA) II (DNA directed) polypeptide A
Gene Type: protein_coding
Species: Oryzias_melastigma
Status: putative
Strand: Plus strand
Length: 12505 bases
Position: chrNVQA01000020.1:11400027-11412531
Accession: ZDB-GENE-041008-78
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOMEP00000027885	RNA_pol_Rpb1_5	PF04998.17	1.6e-101	1	1
ENSOMEP00000009463	RNA_pol_Rpb1_5	PF04998.17	1.7e-101	1	1
ENSOMEP00000009507	RNA_pol_Rpb1_5	PF04998.17	1.8e-101	1	1
ENSOMEP00000027875	RNA_pol_Rpb1_5	PF04998.17	4.4e-98	1	1
ENSOMEP00000027885	RNA_pol_Rpb1_4	PF05000.17	9.8e-38	1	1
ENSOMEP00000009463	RNA_pol_Rpb1_4	PF05000.17	1e-37	1	1
ENSOMEP00000009507	RNA_pol_Rpb1_4	PF05000.17	1.1e-37	1	1
ENSOMEP00000027875	RNA_pol_Rpb1_4	PF05000.17	1.1e-37	1	1
ENSOMEP00000027885	RNA_pol_Rpb1_2	PF00623.20	4e-75	1	1
ENSOMEP00000009463	RNA_pol_Rpb1_2	PF00623.20	4.2e-75	1	1
ENSOMEP00000009507	RNA_pol_Rpb1_2	PF00623.20	4.4e-75	1	1
ENSOMEP00000027875	RNA_pol_Rpb1_2	PF00623.20	2.2e-70	1	1
ENSOMEP00000027885	RNA_pol_Rpb1_3	PF04983.18	1.9e-50	1	1
ENSOMEP00000009463	RNA_pol_Rpb1_3	PF04983.18	2e-50	1	1
ENSOMEP00000009507	RNA_pol_Rpb1_3	PF04983.18	2e-50	1	1
ENSOMEP00000027875	RNA_pol_Rpb1_3	PF04983.18	2.2e-48	1	1
ENSOMEP00000027885	RNA_pol_Rpb1_1	PF04997.12	1.5e-107	1	1
ENSOMEP00000009463	RNA_pol_Rpb1_1	PF04997.12	1.6e-107	1	1
ENSOMEP00000009507	RNA_pol_Rpb1_1	PF04997.12	1.6e-107	1	1
ENSOMEP00000027875	RNA_pol_Rpb1_1	PF04997.12	1.3e-105	1	1
ENSOMEP00000027885	RNA_pol_Rpb1_7	PF04990.12	5.1e-55	1	1
ENSOMEP00000009463	RNA_pol_Rpb1_7	PF04990.12	5.3e-55	1	1
ENSOMEP00000009507	RNA_pol_Rpb1_7	PF04990.12	5.4e-55	1	1
ENSOMEP00000027875	RNA_pol_Rpb1_7	PF04990.12	1.5e-15	1	1
ENSOMEP00000027885	RNA_pol_Rpb1_6	PF04992.14	9e-68	1	1
ENSOMEP00000009463	RNA_pol_Rpb1_6	PF04992.14	9.5e-68	1	1
ENSOMEP00000009507	RNA_pol_Rpb1_6	PF04992.14	9.7e-68	1	1
ENSOMEP00000027875	RNA_pol_Rpb1_6	PF04992.14	1.7e-62	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOMET00000000663	-	5298	-	ENSOMEP00000009507	1607 (aa)	-	-
ENSOMET00000000850	-	4884	-	ENSOMEP00000027875	1628 (aa)	-	-
ENSOMET00000000728	-	5399	-	ENSOMEP00000009463	1588 (aa)	-	-
ENSOMET00000000856	-	4653	-	ENSOMEP00000027885	1550 (aa)	-	-

Gene Model

Click here to download ENSOMEG00000010713's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOMEG00000010713's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSOMEG00000010713	polr2a	84	38.310	ENSOMEG00000012865	polr3a	91	38.386

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOMEG00000010713	polr2a	100	98.320	ENSAPOG00000006552	polr2a	91	98.320	Acanthochromis_polyacanthus
ENSOMEG00000010713	polr2a	100	94.045	ENSAMEG00000016265	-	92	94.045	Ailuropoda_melanoleuca
ENSOMEG00000010713	polr2a	99	98.124	ENSACIG00000015982	polr2a	91	95.769	Amphilophus_citrinellus
ENSOMEG00000010713	polr2a	100	98.444	ENSAOCG00000004255	polr2a	98	96.080	Amphiprion_ocellaris
ENSOMEG00000010713	polr2a	100	98.444	ENSAPEG00000012623	polr2a	98	96.080	Amphiprion_percula
ENSOMEG00000010713	polr2a	100	98.195	ENSATEG00000019644	polr2a	98	95.831	Anabas_testudineus
ENSOMEG00000010713	polr2a	100	94.776	ENSACAG00000014561	POLR2A	92	94.776	Anolis_carolinensis
ENSOMEG00000010713	polr2a	100	94.406	ENSANAG00000020093	-	92	94.406	Aotus_nancymaae
ENSOMEG00000010713	polr2a	100	97.822	ENSACLG00000006735	polr2a	98	95.457	Astatotilapia_calliptera
ENSOMEG00000010713	polr2a	100	97.200	ENSAMXG00000020046	polr2a	95	98.118	Astyanax_mexicanus
ENSOMEG00000010713	polr2a	100	94.406	ENSBTAG00000046765	POLR2A	92	94.406	Bos_taurus
ENSOMEG00000010713	polr2a	99	71.149	WBGene00000123	ama-1	99	70.025	Caenorhabditis_elegans
ENSOMEG00000010713	polr2a	100	94.344	ENSCAFG00000016532	POLR2A	99	94.344	Canis_familiaris
ENSOMEG00000010713	polr2a	100	93.478	ENSCAFG00020007929	-	92	93.478	Canis_lupus_dingo
ENSOMEG00000010713	polr2a	100	94.406	ENSCHIG00000027173	-	92	94.406	Capra_hircus
ENSOMEG00000010713	polr2a	99	94.509	ENSTSYG00000012803	-	98	91.925	Carlito_syrichta
ENSOMEG00000010713	polr2a	97	94.329	ENSCAPG00000001882	-	98	93.710	Cavia_aperea
ENSOMEG00000010713	polr2a	98	94.303	ENSCPOG00000014812	-	98	93.292	Cavia_porcellus
ENSOMEG00000010713	polr2a	100	94.406	ENSCCAG00000020938	-	92	94.406	Cebus_capucinus
ENSOMEG00000010713	polr2a	100	94.406	ENSCATG00000013680	-	92	94.406	Cercocebus_atys
ENSOMEG00000010713	polr2a	100	94.282	ENSCLAG00000012196	-	98	91.186	Chinchilla_lanigera
ENSOMEG00000010713	polr2a	100	85.608	ENSCSAG00000011644	-	94	93.484	Chlorocebus_sabaeus
ENSOMEG00000010713	polr2a	100	91.045	ENSCPBG00000012697	POLR2A	99	85.770	Chrysemys_picta_bellii
ENSOMEG00000010713	polr2a	99	77.848	ENSCING00000007884	-	99	77.425	Ciona_intestinalis
ENSOMEG00000010713	polr2a	99	76.182	ENSCSAVG00000008334	-	99	76.942	Ciona_savignyi
ENSOMEG00000010713	polr2a	100	93.723	ENSCANG00000010622	-	98	90.708	Colobus_angolensis_palliatus
ENSOMEG00000010713	polr2a	99	89.389	ENSCGRG00001003538	Polr2a	98	95.833	Cricetulus_griseus_chok1gshd
ENSOMEG00000010713	polr2a	99	92.129	ENSCGRG00000012105	Polr2a	97	90.663	Cricetulus_griseus_crigri
ENSOMEG00000010713	polr2a	100	96.826	ENSCSEG00000002635	polr2a	99	94.524	Cynoglossus_semilaevis
ENSOMEG00000010713	polr2a	100	98.320	ENSCVAG00000005156	polr2a	92	98.320	Cyprinodon_variegatus
ENSOMEG00000010713	polr2a	99	96.780	ENSDARG00000099966	polr2a	95	98.118	Danio_rerio
ENSOMEG00000010713	polr2a	100	90.847	ENSDNOG00000016482	-	92	90.847	Dasypus_novemcinctus
ENSOMEG00000010713	polr2a	100	94.406	ENSDORG00000008667	Polr2a	92	94.406	Dipodomys_ordii
ENSOMEG00000010713	polr2a	98	75.902	FBgn0003277	RpII215	88	74.269	Drosophila_melanogaster
ENSOMEG00000010713	polr2a	93	91.409	ENSETEG00000002540	-	85	91.409	Echinops_telfairi
ENSOMEG00000010713	polr2a	99	87.211	ENSEBUG00000013967	polr2a	96	85.753	Eptatretus_burgeri
ENSOMEG00000010713	polr2a	100	92.356	ENSEASG00005019114	-	94	92.356	Equus_asinus_asinus
ENSOMEG00000010713	polr2a	100	94.406	ENSECAG00000018485	POLR2A	92	94.406	Equus_caballus
ENSOMEG00000010713	polr2a	96	94.259	ENSEEUG00000001154	-	92	94.259	Erinaceus_europaeus
ENSOMEG00000010713	polr2a	99	95.119	ENSELUG00000014284	polr2a	82	95.119	Esox_lucius
ENSOMEG00000010713	polr2a	100	94.469	ENSFDAG00000008287	-	92	94.469	Fukomys_damarensis
ENSOMEG00000010713	polr2a	100	98.009	ENSFHEG00000001768	polr2a	94	98.009	Fundulus_heteroclitus
ENSOMEG00000010713	polr2a	99	95.770	ENSGMOG00000007725	polr2a	99	93.009	Gadus_morhua
ENSOMEG00000010713	polr2a	100	98.444	ENSGAFG00000005389	polr2a	93	98.444	Gambusia_affinis
ENSOMEG00000010713	polr2a	99	96.081	ENSGACG00000019366	polr2a	99	93.248	Gasterosteus_aculeatus
ENSOMEG00000010713	polr2a	100	92.312	ENSGGOG00000014800	-	96	92.487	Gorilla_gorilla
ENSOMEG00000010713	polr2a	100	97.822	ENSHBUG00000018937	polr2a	97	97.822	Haplochromis_burtoni
ENSOMEG00000010713	polr2a	100	94.469	ENSHGLG00000012381	POLR2A	92	94.469	Heterocephalus_glaber_female
ENSOMEG00000010713	polr2a	100	94.469	ENSHGLG00100014843	POLR2A	92	94.469	Heterocephalus_glaber_male
ENSOMEG00000010713	polr2a	100	97.573	ENSHCOG00000011874	polr2a	95	97.849	Hippocampus_comes
ENSOMEG00000010713	polr2a	100	96.640	ENSIPUG00000002613	Polr2a	98	97.581	Ictalurus_punctatus
ENSOMEG00000010713	polr2a	100	94.406	ENSSTOG00000001304	-	92	94.406	Ictidomys_tridecemlineatus
ENSOMEG00000010713	polr2a	100	94.406	ENSJJAG00000013049	Polr2a	98	91.615	Jaculus_jaculus
ENSOMEG00000010713	polr2a	92	97.283	ENSKMAG00000016343	polr2a	85	97.283	Kryptolebias_marmoratus
ENSOMEG00000010713	polr2a	100	97.884	ENSLBEG00000027652	polr2a	99	95.520	Labrus_bergylta
ENSOMEG00000010713	polr2a	98	85.434	ENSLACG00000012071	POLR2A	91	85.488	Latimeria_chalumnae
ENSOMEG00000010713	polr2a	99	97.096	ENSLOCG00000013863	polr2a	98	96.881	Lepisosteus_oculatus
ENSOMEG00000010713	polr2a	100	94.406	ENSLAFG00000008626	-	98	94.406	Loxodonta_africana
ENSOMEG00000010713	polr2a	63	92.748	ENSMFAG00000007042	-	99	92.748	Macaca_fascicularis
ENSOMEG00000010713	polr2a	100	94.406	ENSMMUG00000023620	-	92	94.406	Macaca_mulatta
ENSOMEG00000010713	polr2a	100	93.971	ENSMNEG00000040407	-	98	95.699	Macaca_nemestrina
ENSOMEG00000010713	polr2a	98	89.987	ENSMLEG00000030263	-	99	92.748	Mandrillus_leucophaeus
ENSOMEG00000010713	polr2a	100	97.884	ENSMAMG00000003351	polr2a	92	97.884	Mastacembelus_armatus
ENSOMEG00000010713	polr2a	100	97.822	ENSMZEG00005021429	polr2a	92	97.822	Maylandia_zebra
ENSOMEG00000010713	polr2a	63	93.782	ENSMAUG00000021055	-	99	93.782	Mesocricetus_auratus
ENSOMEG00000010713	polr2a	100	94.344	ENSMICG00000013372	-	98	93.142	Microcebus_murinus
ENSOMEG00000010713	polr2a	99	92.328	ENSMOCG00000018279	Polr2a	93	85.266	Microtus_ochrogaster
ENSOMEG00000010713	polr2a	100	97.075	ENSMMOG00000012515	polr2a	94	97.075	Mola_mola
ENSOMEG00000010713	polr2a	100	94.158	ENSMODG00000007009	-	92	94.158	Monodelphis_domestica
ENSOMEG00000010713	polr2a	100	97.884	ENSMALG00000008716	polr2a	93	98.118	Monopterus_albus
ENSOMEG00000010713	polr2a	100	94.406	MGP_CAROLIEiJ_G0016587	Polr2a	98	94.406	Mus_caroli
ENSOMEG00000010713	polr2a	100	94.406	ENSMUSG00000005198	Polr2a	98	94.406	Mus_musculus
ENSOMEG00000010713	polr2a	100	92.265	MGP_PahariEiJ_G0017718	Polr2a	98	87.275	Mus_pahari
ENSOMEG00000010713	polr2a	100	94.406	MGP_SPRETEiJ_G0017423	Polr2a	98	94.406	Mus_spretus
ENSOMEG00000010713	polr2a	100	94.282	ENSMPUG00000009648	-	92	94.282	Mustela_putorius_furo
ENSOMEG00000010713	polr2a	100	93.793	ENSMLUG00000009088	-	92	93.793	Myotis_lucifugus
ENSOMEG00000010713	polr2a	100	94.406	ENSNGAG00000002543	Polr2a	92	94.406	Nannospalax_galili
ENSOMEG00000010713	polr2a	99	97.930	ENSNBRG00000002005	polr2a	98	95.582	Neolamprologus_brichardi
ENSOMEG00000010713	polr2a	99	94.509	ENSNLEG00000009460	-	92	92.932	Nomascus_leucogenys
ENSOMEG00000010713	polr2a	99	85.472	ENSMEUG00000008611	-	88	94.553	Notamacropus_eugenii
ENSOMEG00000010713	polr2a	99	94.125	ENSOPRG00000015116	-	99	94.125	Ochotona_princeps
ENSOMEG00000010713	polr2a	98	93.097	ENSODEG00000017674	-	98	89.345	Octodon_degus
ENSOMEG00000010713	polr2a	100	98.009	ENSONIG00000009231	polr2a	95	97.581	Oreochromis_niloticus
ENSOMEG00000010713	polr2a	60	93.670	ENSOANG00000003303	-	98	93.670	Ornithorhynchus_anatinus
ENSOMEG00000010713	polr2a	99	94.279	ENSOCUG00000017929	-	99	94.282	Oryctolagus_cuniculus
ENSOMEG00000010713	polr2a	100	99.751	ENSORLG00000006431	polr2a	98	97.324	Oryzias_latipes
ENSOMEG00000010713	polr2a	100	99.751	ENSORLG00020010235	polr2a	98	97.324	Oryzias_latipes_hni
ENSOMEG00000010713	polr2a	100	99.627	ENSORLG00015007075	polr2a	98	97.200	Oryzias_latipes_hsok
ENSOMEG00000010713	polr2a	100	94.406	ENSOGAG00000033608	-	92	94.406	Otolemur_garnettii
ENSOMEG00000010713	polr2a	100	94.406	ENSOARG00000013874	-	98	94.406	Ovis_aries
ENSOMEG00000010713	polr2a	99	94.509	ENSPPAG00000043734	-	98	92.135	Pan_paniscus
ENSOMEG00000010713	polr2a	99	94.509	ENSPTRG00000008691	POLR2A	92	92.932	Pan_troglodytes
ENSOMEG00000010713	polr2a	100	93.723	ENSPANG00000024099	-	92	93.723	Papio_anubis
ENSOMEG00000010713	polr2a	96	95.656	ENSPKIG00000005727	polr2a	81	95.656	Paramormyrops_kingsleyae
ENSOMEG00000010713	polr2a	100	92.671	ENSPSIG00000014006	POLR2A	100	92.671	Pelodiscus_sinensis
ENSOMEG00000010713	polr2a	100	97.573	ENSPMGG00000019734	polr2a	97	97.573	Periophthalmus_magnuspinnatus
ENSOMEG00000010713	polr2a	100	94.406	ENSPEMG00000012521	Polr2a	92	94.406	Peromyscus_maniculatus_bairdii
ENSOMEG00000010713	polr2a	100	94.158	ENSPCIG00000028851	-	82	94.158	Phascolarctos_cinereus
ENSOMEG00000010713	polr2a	100	98.382	ENSPFOG00000007890	polr2a	97	98.382	Poecilia_formosa
ENSOMEG00000010713	polr2a	100	98.382	ENSPLAG00000007399	polr2a	97	98.382	Poecilia_latipinna
ENSOMEG00000010713	polr2a	100	98.382	ENSPMEG00000002071	polr2a	97	98.382	Poecilia_mexicana
ENSOMEG00000010713	polr2a	100	98.444	ENSPREG00000013122	polr2a	98	96.017	Poecilia_reticulata
ENSOMEG00000010713	polr2a	100	94.406	ENSPPYG00000007924	-	91	94.406	Pongo_abelii
ENSOMEG00000010713	polr2a	90	94.737	ENSPCAG00000006951	-	88	95.699	Procavia_capensis
ENSOMEG00000010713	polr2a	99	94.509	ENSPCOG00000025260	-	92	93.103	Propithecus_coquereli
ENSOMEG00000010713	polr2a	100	94.096	ENSPVAG00000005069	-	96	95.161	Pteropus_vampyrus
ENSOMEG00000010713	polr2a	100	97.884	ENSPNYG00000022340	polr2a	92	97.884	Pundamilia_nyererei
ENSOMEG00000010713	polr2a	100	97.386	ENSPNAG00000011237	polr2a	92	97.386	Pygocentrus_nattereri
ENSOMEG00000010713	polr2a	100	94.344	ENSRNOG00000028834	Polr2a	92	94.344	Rattus_norvegicus
ENSOMEG00000010713	polr2a	100	94.034	ENSRBIG00000002471	-	98	92.231	Rhinopithecus_bieti
ENSOMEG00000010713	polr2a	100	94.406	ENSRROG00000029583	-	92	94.406	Rhinopithecus_roxellana
ENSOMEG00000010713	polr2a	99	50.914	YDL140C	RPO21	99	50.550	Saccharomyces_cerevisiae
ENSOMEG00000010713	polr2a	100	94.406	ENSSBOG00000000808	-	92	94.406	Saimiri_boliviensis_boliviensis
ENSOMEG00000010713	polr2a	100	94.158	ENSSHAG00000002858	-	91	94.158	Sarcophilus_harrisii
ENSOMEG00000010713	polr2a	100	97.138	ENSSFOG00015023275	polr2a	98	94.835	Scleropages_formosus
ENSOMEG00000010713	polr2a	100	97.449	ENSSMAG00000009137	polr2a	92	97.449	Scophthalmus_maximus
ENSOMEG00000010713	polr2a	100	98.009	ENSSDUG00000020466	polr2a	98	95.644	Seriola_dumerili
ENSOMEG00000010713	polr2a	100	97.946	ENSSLDG00000020613	polr2a	98	95.582	Seriola_lalandi_dorsalis
ENSOMEG00000010713	polr2a	100	90.807	ENSSARG00000005875	-	96	90.807	Sorex_araneus
ENSOMEG00000010713	polr2a	100	98.320	ENSSPAG00000016741	polr2a	92	98.320	Stegastes_partitus
ENSOMEG00000010713	polr2a	100	93.474	ENSSSCG00000028278	-	92	93.474	Sus_scrofa
ENSOMEG00000010713	polr2a	94	97.319	ENSTRUG00000012320	polr2a	80	97.319	Takifugu_rubripes
ENSOMEG00000010713	polr2a	100	96.266	ENSTNIG00000010136	polr2a	99	96.266	Tetraodon_nigroviridis
ENSOMEG00000010713	polr2a	68	94.087	ENSTBEG00000013294	-	53	94.087	Tupaia_belangeri
ENSOMEG00000010713	polr2a	100	92.728	ENSTTRG00000014273	-	96	95.699	Tursiops_truncatus
ENSOMEG00000010713	polr2a	100	93.986	ENSUAMG00000014866	-	99	91.445	Ursus_americanus
ENSOMEG00000010713	polr2a	91	91.900	ENSUMAG00000015732	-	97	95.833	Ursus_maritimus
ENSOMEG00000010713	polr2a	56	98.370	ENSVPAG00000008842	-	75	98.370	Vicugna_pacos
ENSOMEG00000010713	polr2a	100	94.344	ENSVVUG00000027878	-	92	94.344	Vulpes_vulpes
ENSOMEG00000010713	polr2a	99	94.077	ENSXETG00000012465	polr2a	92	94.077	Xenopus_tropicalis
ENSOMEG00000010713	polr2a	99	98.254	ENSXCOG00000001804	polr2a	99	95.893	Xiphophorus_couchianus
ENSOMEG00000010713	polr2a	100	98.320	ENSXMAG00000015687	polr2a	98	95.893	Xiphophorus_maculatus