EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSOMEG00000010789 (Gene tree)
Gene ID: 112159117
Gene Symbol: pabpc1l
Alias: -
Full Name: embryonic polyadenylate-binding protein-like
Gene Type: protein_coding
Species: Oryzias_melastigma
Status: putative
Strand: Plus strand
Length: 11399 bases
Position: chrNVQA01000024.1:18094064-18105462
Accession: 112159117
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOMEP00000027981	PABP	PF00658.18	4.3e-29	1	1
ENSOMEP00000027990	PABP	PF00658.18	4.7e-29	1	1
ENSOMEP00000027990	RRM_5	PF13893.6	7.6e-09	1	1
ENSOMEP00000027981	RRM_5	PF13893.6	7.8e-07	1	1
ENSOMEP00000027990	RRM_1	PF00076.22	1.5e-88	1	4
ENSOMEP00000027990	RRM_1	PF00076.22	1.5e-88	2	4
ENSOMEP00000027990	RRM_1	PF00076.22	1.5e-88	3	4
ENSOMEP00000027990	RRM_1	PF00076.22	1.5e-88	4	4
ENSOMEP00000027981	RRM_1	PF00076.22	9.8e-82	1	4
ENSOMEP00000027981	RRM_1	PF00076.22	9.8e-82	2	4
ENSOMEP00000027981	RRM_1	PF00076.22	9.8e-82	3	4
ENSOMEP00000027981	RRM_1	PF00076.22	9.8e-82	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOMET00000000548	-	2469	-	ENSOMEP00000027990	655 (aa)	XP_024148753	UPI000CF810F5
ENSOMET00000000580	-	2397	-	ENSOMEP00000027981	631 (aa)	-	-

Gene Model

Click here to download ENSOMEG00000010789's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOMEG00000010789's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSOMEG00000010789	pabpc1l	59	30.508	ENSOMEG00000020931	tia1	68	30.508
ENSOMEG00000010789	pabpc1l	59	37.662	ENSOMEG00000015322	-	87	35.802
ENSOMEG00000010789	pabpc1l	99	65.861	ENSOMEG00000020219	pabpc1a	98	65.916
ENSOMEG00000010789	pabpc1l	100	62.500	ENSOMEG00000014410	pabpc4	98	63.308
ENSOMEG00000010789	pabpc1l	83	71.910	ENSOMEG00000013627	pabpc1b	97	71.910

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOMEG00000010789	pabpc1l	99	64.319	ENSG00000101104	PABPC1L	98	70.822	Homo_sapiens
ENSOMEG00000010789	pabpc1l	99	77.573	ENSAPOG00000010842	pabpc1l	99	77.573	Acanthochromis_polyacanthus
ENSOMEG00000010789	pabpc1l	99	60.530	ENSAMEG00000004099	PABPC1L	100	60.619	Ailuropoda_melanoleuca
ENSOMEG00000010789	pabpc1l	99	85.780	ENSACIG00000021004	-	100	85.780	Amphilophus_citrinellus
ENSOMEG00000010789	pabpc1l	100	81.527	ENSAOCG00000006167	-	100	81.527	Amphiprion_ocellaris
ENSOMEG00000010789	pabpc1l	100	78.321	ENSAPEG00000010558	-	100	80.856	Amphiprion_percula
ENSOMEG00000010789	pabpc1l	100	81.915	ENSATEG00000007428	pabpc1l	100	82.371	Anabas_testudineus
ENSOMEG00000010789	pabpc1l	98	66.974	ENSAPLG00000008415	PABPC1L	99	66.971	Anas_platyrhynchos
ENSOMEG00000010789	pabpc1l	99	69.624	ENSACAG00000011841	PABPC1L	99	69.624	Anolis_carolinensis
ENSOMEG00000010789	pabpc1l	99	63.830	ENSANAG00000026826	PABPC1L	99	63.830	Aotus_nancymaae
ENSOMEG00000010789	pabpc1l	100	86.191	ENSACLG00000024791	pabpc1l	100	86.191	Astatotilapia_calliptera
ENSOMEG00000010789	pabpc1l	100	76.024	ENSAMXG00000013552	pabpc1l	100	76.024	Astyanax_mexicanus
ENSOMEG00000010789	pabpc1l	57	68.980	ENSBTAG00000016849	PABPC1L	74	68.980	Bos_taurus
ENSOMEG00000010789	pabpc1l	63	88.095	ENSBTAG00000055300	-	100	88.095	Bos_taurus
ENSOMEG00000010789	pabpc1l	99	63.982	ENSCJAG00000017628	PABPC1L	99	63.982	Callithrix_jacchus
ENSOMEG00000010789	pabpc1l	53	80.702	ENSCJAG00000038506	-	100	80.702	Callithrix_jacchus
ENSOMEG00000010789	pabpc1l	99	61.152	ENSCAFG00000009573	PABPC1L	100	61.152	Canis_familiaris
ENSOMEG00000010789	pabpc1l	99	64.947	ENSCAFG00020013828	PABPC1L	99	64.947	Canis_lupus_dingo
ENSOMEG00000010789	pabpc1l	98	64.341	ENSCHIG00000025759	PABPC1L	91	64.341	Capra_hircus
ENSOMEG00000010789	pabpc1l	99	62.709	ENSTSYG00000006645	PABPC1L	99	62.709	Carlito_syrichta
ENSOMEG00000010789	pabpc1l	98	58.291	ENSCAPG00000014519	PABPC1L	99	58.291	Cavia_aperea
ENSOMEG00000010789	pabpc1l	99	61.339	ENSCPOG00000013633	PABPC1L	99	61.339	Cavia_porcellus
ENSOMEG00000010789	pabpc1l	99	63.456	ENSCCAG00000023338	PABPC1L	99	64.067	Cebus_capucinus
ENSOMEG00000010789	pabpc1l	99	64.231	ENSCATG00000034065	PABPC1L	99	64.438	Cercocebus_atys
ENSOMEG00000010789	pabpc1l	99	60.334	ENSCLAG00000005298	PABPC1L	99	61.246	Chinchilla_lanigera
ENSOMEG00000010789	pabpc1l	99	64.079	ENSCSAG00000014242	PABPC1L	99	64.286	Chlorocebus_sabaeus
ENSOMEG00000010789	pabpc1l	71	74.947	ENSCPBG00000017755	-	99	74.947	Chrysemys_picta_bellii
ENSOMEG00000010789	pabpc1l	57	89.916	ENSCPBG00000007810	-	91	89.916	Chrysemys_picta_bellii
ENSOMEG00000010789	pabpc1l	87	57.500	ENSCING00000002796	-	97	46.212	Ciona_intestinalis
ENSOMEG00000010789	pabpc1l	99	61.159	ENSCSAVG00000004246	-	96	61.017	Ciona_savignyi
ENSOMEG00000010789	pabpc1l	99	54.751	ENSCSAVG00000003102	-	100	85.034	Ciona_savignyi
ENSOMEG00000010789	pabpc1l	99	61.955	ENSCANG00000037530	PABPC1L	99	62.162	Colobus_angolensis_palliatus
ENSOMEG00000010789	pabpc1l	99	57.014	ENSCGRG00001021938	Pabpc1l	99	57.014	Cricetulus_griseus_chok1gshd
ENSOMEG00000010789	pabpc1l	99	57.014	ENSCGRG00000007946	Pabpc1l	99	57.014	Cricetulus_griseus_crigri
ENSOMEG00000010789	pabpc1l	99	70.904	ENSCSEG00000021295	pabpc1l	99	70.904	Cynoglossus_semilaevis
ENSOMEG00000010789	pabpc1l	100	82.192	ENSCVAG00000015943	-	99	94.656	Cyprinodon_variegatus
ENSOMEG00000010789	pabpc1l	99	72.603	ENSDARG00000002597	pabpc1l	88	92.308	Danio_rerio
ENSOMEG00000010789	pabpc1l	99	65.396	ENSDNOG00000048450	PABPC1L	99	65.396	Dasypus_novemcinctus
ENSOMEG00000010789	pabpc1l	99	62.348	ENSDORG00000001067	Pabpc1l	99	62.348	Dipodomys_ordii
ENSOMEG00000010789	pabpc1l	95	68.364	ENSETEG00000009969	PABPC1L	72	68.364	Echinops_telfairi
ENSOMEG00000010789	pabpc1l	63	85.714	ENSEASG00005023408	-	100	85.714	Equus_asinus_asinus
ENSOMEG00000010789	pabpc1l	50	75.316	ENSEASG00005023407	-	64	75.316	Equus_asinus_asinus
ENSOMEG00000010789	pabpc1l	69	62.547	ENSECAG00000040139	-	96	62.547	Equus_caballus
ENSOMEG00000010789	pabpc1l	99	62.481	ENSEEUG00000005978	PABPC1L	99	62.481	Erinaceus_europaeus
ENSOMEG00000010789	pabpc1l	100	78.664	ENSELUG00000001811	pabpc1l	100	78.664	Esox_lucius
ENSOMEG00000010789	pabpc1l	99	64.742	ENSFCAG00000011692	PABPC1L	99	64.742	Felis_catus
ENSOMEG00000010789	pabpc1l	85	68.375	ENSFALG00000005372	PABPC1L	90	68.375	Ficedula_albicollis
ENSOMEG00000010789	pabpc1l	99	60.398	ENSFDAG00000008291	PABPC1L	99	60.611	Fukomys_damarensis
ENSOMEG00000010789	pabpc1l	100	87.195	ENSFHEG00000003398	pabpc1l	100	87.195	Fundulus_heteroclitus
ENSOMEG00000010789	pabpc1l	99	76.641	ENSGMOG00000004437	pabpc1l	99	76.641	Gadus_morhua
ENSOMEG00000010789	pabpc1l	89	73.274	ENSGALG00000004123	PABPC1L	99	75.556	Gallus_gallus
ENSOMEG00000010789	pabpc1l	100	86.495	ENSGAFG00000021057	pabpc1l	100	86.495	Gambusia_affinis
ENSOMEG00000010789	pabpc1l	99	80.183	ENSGACG00000002792	pabpc1l	100	80.183	Gasterosteus_aculeatus
ENSOMEG00000010789	pabpc1l	99	69.651	ENSGAGG00000000589	PABPC1L	98	69.651	Gopherus_agassizii
ENSOMEG00000010789	pabpc1l	99	64.319	ENSGGOG00000004584	PABPC1L	99	64.526	Gorilla_gorilla
ENSOMEG00000010789	pabpc1l	100	86.412	ENSHBUG00000006134	pabpc1l	100	86.412	Haplochromis_burtoni
ENSOMEG00000010789	pabpc1l	100	61.178	ENSHGLG00000008434	PABPC1L	99	61.480	Heterocephalus_glaber_female
ENSOMEG00000010789	pabpc1l	100	61.178	ENSHGLG00100012151	PABPC1L	99	61.480	Heterocephalus_glaber_male
ENSOMEG00000010789	pabpc1l	60	74.396	ENSHGLG00100019506	-	100	74.396	Heterocephalus_glaber_male
ENSOMEG00000010789	pabpc1l	99	80.635	ENSHCOG00000009270	pabpc1l	100	80.635	Hippocampus_comes
ENSOMEG00000010789	pabpc1l	60	53.202	ENSIPUG00000006780	-	85	53.202	Ictalurus_punctatus
ENSOMEG00000010789	pabpc1l	60	53.202	ENSIPUG00000006760	-	88	53.202	Ictalurus_punctatus
ENSOMEG00000010789	pabpc1l	100	74.810	ENSIPUG00000012602	pabpc1l	100	74.810	Ictalurus_punctatus
ENSOMEG00000010789	pabpc1l	99	63.775	ENSSTOG00000003739	PABPC1L	99	63.775	Ictidomys_tridecemlineatus
ENSOMEG00000010789	pabpc1l	99	52.665	ENSJJAG00000022406	Pabpc1l	99	52.665	Jaculus_jaculus
ENSOMEG00000010789	pabpc1l	100	82.774	ENSKMAG00000016847	pabpc1l	100	82.774	Kryptolebias_marmoratus
ENSOMEG00000010789	pabpc1l	100	84.275	ENSLBEG00000010084	pabpc1l	100	84.275	Labrus_bergylta
ENSOMEG00000010789	pabpc1l	99	68.209	ENSLACG00000005762	PABPC1L	99	69.271	Latimeria_chalumnae
ENSOMEG00000010789	pabpc1l	99	74.697	ENSLOCG00000007519	pabpc1l	99	74.697	Lepisosteus_oculatus
ENSOMEG00000010789	pabpc1l	99	63.952	ENSLAFG00000003553	PABPC1L	100	63.952	Loxodonta_africana
ENSOMEG00000010789	pabpc1l	99	64.536	ENSMFAG00000040365	PABPC1L	99	64.742	Macaca_fascicularis
ENSOMEG00000010789	pabpc1l	99	63.623	ENSMNEG00000032298	PABPC1L	99	63.830	Macaca_nemestrina
ENSOMEG00000010789	pabpc1l	99	64.231	ENSMLEG00000043139	PABPC1L	99	64.438	Mandrillus_leucophaeus
ENSOMEG00000010789	pabpc1l	97	81.918	ENSMAMG00000011854	pabpc1l	97	81.918	Mastacembelus_armatus
ENSOMEG00000010789	pabpc1l	100	86.191	ENSMZEG00005023713	pabpc1l	100	86.191	Maylandia_zebra
ENSOMEG00000010789	pabpc1l	99	68.389	ENSMGAG00000003674	PABPC1L	99	68.389	Meleagris_gallopavo
ENSOMEG00000010789	pabpc1l	99	56.839	ENSMOCG00000013186	Pabpc1l	99	56.839	Microtus_ochrogaster
ENSOMEG00000010789	pabpc1l	99	81.193	ENSMMOG00000020574	-	90	95.385	Mola_mola
ENSOMEG00000010789	pabpc1l	95	65.869	ENSMODG00000016198	PABPC1L	99	66.304	Monodelphis_domestica
ENSOMEG00000010789	pabpc1l	99	82.901	ENSMALG00000021622	pabpc1l	99	82.901	Monopterus_albus
ENSOMEG00000010789	pabpc1l	99	57.489	MGP_CAROLIEiJ_G0024627	Pabpc1l	99	57.489	Mus_caroli
ENSOMEG00000010789	pabpc1l	99	57.489	ENSMUSG00000054582	Pabpc1l	99	57.489	Mus_musculus
ENSOMEG00000010789	pabpc1l	100	57.768	MGP_PahariEiJ_G0026071	Pabpc1l	100	57.768	Mus_pahari
ENSOMEG00000010789	pabpc1l	99	57.489	MGP_SPRETEiJ_G0025549	Pabpc1l	99	57.489	Mus_spretus
ENSOMEG00000010789	pabpc1l	99	65.000	ENSMPUG00000017646	PABPC1L	99	65.000	Mustela_putorius_furo
ENSOMEG00000010789	pabpc1l	98	61.970	ENSMLUG00000006324	PABPC1L	98	61.970	Myotis_lucifugus
ENSOMEG00000010789	pabpc1l	99	58.788	ENSNGAG00000010458	Pabpc1l	99	58.788	Nannospalax_galili
ENSOMEG00000010789	pabpc1l	100	83.969	ENSNBRG00000016633	pabpc1l	100	88.889	Neolamprologus_brichardi
ENSOMEG00000010789	pabpc1l	90	61.616	ENSMEUG00000007905	-	89	61.616	Notamacropus_eugenii
ENSOMEG00000010789	pabpc1l	99	63.706	ENSOPRG00000011846	PABPC1L	99	63.706	Ochotona_princeps
ENSOMEG00000010789	pabpc1l	99	57.362	ENSODEG00000015482	PABPC1L	99	57.362	Octodon_degus
ENSOMEG00000010789	pabpc1l	59	80.625	ENSODEG00000002920	-	97	80.625	Octodon_degus
ENSOMEG00000010789	pabpc1l	100	84.427	ENSONIG00000017314	pabpc1l	100	84.427	Oreochromis_niloticus
ENSOMEG00000010789	pabpc1l	90	59.396	ENSOANG00000015793	-	100	59.396	Ornithorhynchus_anatinus
ENSOMEG00000010789	pabpc1l	99	60.553	ENSOCUG00000003005	PABPC1L	99	60.699	Oryctolagus_cuniculus
ENSOMEG00000010789	pabpc1l	100	90.076	ENSORLG00000010322	pabpc1l	100	95.238	Oryzias_latipes
ENSOMEG00000010789	pabpc1l	100	90.687	ENSORLG00020021193	pabpc1l	100	95.238	Oryzias_latipes_hni
ENSOMEG00000010789	pabpc1l	100	89.924	ENSORLG00015017018	pabpc1l	100	94.048	Oryzias_latipes_hsok
ENSOMEG00000010789	pabpc1l	99	64.242	ENSOGAG00000032999	PABPC1L	99	64.242	Otolemur_garnettii
ENSOMEG00000010789	pabpc1l	99	64.526	ENSOARG00000004578	PABPC1L	99	64.526	Ovis_aries
ENSOMEG00000010789	pabpc1l	99	64.472	ENSPPAG00000039677	PABPC1L	99	64.679	Pan_paniscus
ENSOMEG00000010789	pabpc1l	63	63.173	ENSPPRG00000019327	-	98	63.173	Panthera_pardus
ENSOMEG00000010789	pabpc1l	99	64.571	ENSPTIG00000006524	PABPC1L	99	64.571	Panthera_tigris_altaica
ENSOMEG00000010789	pabpc1l	63	71.105	ENSPTRG00000013531	PABPC1L	98	71.105	Pan_troglodytes
ENSOMEG00000010789	pabpc1l	99	64.231	ENSPANG00000018788	PABPC1L	99	64.438	Papio_anubis
ENSOMEG00000010789	pabpc1l	54	83.969	ENSPKIG00000016810	-	93	83.969	Paramormyrops_kingsleyae
ENSOMEG00000010789	pabpc1l	100	74.772	ENSPKIG00000007322	pabpc1l	100	74.772	Paramormyrops_kingsleyae
ENSOMEG00000010789	pabpc1l	68	75.785	ENSPSIG00000013289	PABPC1L	99	75.785	Pelodiscus_sinensis
ENSOMEG00000010789	pabpc1l	66	84.021	ENSPMGG00000023121	-	91	84.021	Periophthalmus_magnuspinnatus
ENSOMEG00000010789	pabpc1l	62	81.967	ENSPMGG00000023117	pabpc1l	94	92.593	Periophthalmus_magnuspinnatus
ENSOMEG00000010789	pabpc1l	99	56.601	ENSPEMG00000020671	Pabpc1l	99	57.186	Peromyscus_maniculatus_bairdii
ENSOMEG00000010789	pabpc1l	100	84.275	ENSPFOG00000013241	pabpc1l	100	84.275	Poecilia_formosa
ENSOMEG00000010789	pabpc1l	100	86.495	ENSPLAG00000017490	-	100	86.495	Poecilia_latipinna
ENSOMEG00000010789	pabpc1l	50	95.385	ENSPLAG00000023686	-	92	95.385	Poecilia_latipinna
ENSOMEG00000010789	pabpc1l	100	86.343	ENSPMEG00000007677	pabpc1l	100	86.343	Poecilia_mexicana
ENSOMEG00000010789	pabpc1l	67	87.500	ENSPREG00000015886	pabpc1l	99	87.500	Poecilia_reticulata
ENSOMEG00000010789	pabpc1l	99	64.231	ENSPPYG00000011042	PABPC1L	99	64.438	Pongo_abelii
ENSOMEG00000010789	pabpc1l	57	87.500	ENSPCAG00000011787	-	75	87.500	Procavia_capensis
ENSOMEG00000010789	pabpc1l	99	64.894	ENSPCOG00000020630	PABPC1L	99	64.894	Propithecus_coquereli
ENSOMEG00000010789	pabpc1l	99	63.318	ENSPVAG00000012663	PABPC1L	99	63.318	Pteropus_vampyrus
ENSOMEG00000010789	pabpc1l	100	79.847	ENSPNYG00000004101	pabpc1l	100	88.889	Pundamilia_nyererei
ENSOMEG00000010789	pabpc1l	100	69.394	ENSPNAG00000021248	pabpc1l	100	69.394	Pygocentrus_nattereri
ENSOMEG00000010789	pabpc1l	99	57.100	ENSRNOG00000012750	Pabpc1l	99	57.100	Rattus_norvegicus
ENSOMEG00000010789	pabpc1l	99	64.231	ENSRBIG00000035381	PABPC1L	99	64.438	Rhinopithecus_bieti
ENSOMEG00000010789	pabpc1l	99	64.079	ENSRROG00000044498	PABPC1L	99	64.286	Rhinopithecus_roxellana
ENSOMEG00000010789	pabpc1l	99	63.830	ENSSBOG00000009532	-	99	63.830	Saimiri_boliviensis_boliviensis
ENSOMEG00000010789	pabpc1l	98	59.733	ENSSHAG00000011446	PABPC1L	100	59.733	Sarcophilus_harrisii
ENSOMEG00000010789	pabpc1l	100	74.507	ENSSFOG00015017304	pabpc1l	100	74.507	Scleropages_formosus
ENSOMEG00000010789	pabpc1l	100	81.374	ENSSMAG00000010516	pabpc1l	93	95.349	Scophthalmus_maximus
ENSOMEG00000010789	pabpc1l	100	85.976	ENSSDUG00000014743	pabpc1l	100	85.976	Seriola_dumerili
ENSOMEG00000010789	pabpc1l	97	80.630	ENSSLDG00000006981	pabpc1l	94	88.372	Seriola_lalandi_dorsalis
ENSOMEG00000010789	pabpc1l	99	68.731	ENSSPUG00000004233	PABPC1L	99	68.731	Sphenodon_punctatus
ENSOMEG00000010789	pabpc1l	100	70.076	ENSSPAG00000017137	pabpc1l	100	70.076	Stegastes_partitus
ENSOMEG00000010789	pabpc1l	99	64.177	ENSSSCG00000007382	PABPC1L	99	64.177	Sus_scrofa
ENSOMEG00000010789	pabpc1l	99	67.213	ENSTGUG00000005114	PABPC1L	100	67.213	Taeniopygia_guttata
ENSOMEG00000010789	pabpc1l	97	81.447	ENSTRUG00000011085	pabpc1l	97	81.447	Takifugu_rubripes
ENSOMEG00000010789	pabpc1l	99	79.570	ENSTNIG00000017903	pabpc1l	98	79.570	Tetraodon_nigroviridis
ENSOMEG00000010789	pabpc1l	94	71.340	ENSTBEG00000002851	PABPC1L	79	71.340	Tupaia_belangeri
ENSOMEG00000010789	pabpc1l	95	62.319	ENSTTRG00000007618	PABPC1L	100	62.637	Tursiops_truncatus
ENSOMEG00000010789	pabpc1l	99	62.748	ENSUAMG00000017682	PABPC1L	99	62.748	Ursus_americanus
ENSOMEG00000010789	pabpc1l	66	68.557	ENSUMAG00000025436	PABPC1L	92	68.557	Ursus_maritimus
ENSOMEG00000010789	pabpc1l	98	67.361	ENSVVUG00000018939	PABPC1L	99	67.361	Vulpes_vulpes
ENSOMEG00000010789	pabpc1l	99	66.112	ENSXETG00000022831	pabpc1l	99	66.112	Xenopus_tropicalis
ENSOMEG00000010789	pabpc1l	100	82.595	ENSXCOG00000005459	pabpc1l	99	90.780	Xiphophorus_couchianus
ENSOMEG00000010789	pabpc1l	100	86.798	ENSXMAG00000017135	pabpc1l	100	86.798	Xiphophorus_maculatus