EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSOMEG00000010838 (Gene tree)
Gene ID: 112143075
Gene Symbol: smg6
Alias: -
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Oryzias_melastigma
Status: putative
Strand: Plus strand
Length: 15729 bases
Position: chrNVQA01000005.1:15599784-15615512
Accession: 112143075
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOMEP00000009618	EST1	PF10374.9	8.3e-14	1	1
ENSOMEP00000009618	EST1_DNA_bind	PF10373.9	2.2e-57	1	1
ENSOMEP00000009618	PIN_4	PF13638.6	1.2e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOMET00000000469	-	8200	-	ENSOMEP00000009618	1620 (aa)	XP_024122600	UPI000CF7DB8A

Gene Model

Click here to download ENSOMEG00000010838's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOMEG00000010838's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOMEG00000010838	smg6	75	53.695	ENSG00000070366	SMG6	100	56.679	Homo_sapiens
ENSOMEG00000010838	smg6	100	70.024	ENSAPOG00000019448	smg6	100	69.484	Acanthochromis_polyacanthus
ENSOMEG00000010838	smg6	75	53.810	ENSAMEG00000007632	SMG6	83	53.459	Ailuropoda_melanoleuca
ENSOMEG00000010838	smg6	93	67.547	ENSACIG00000012997	smg6	100	67.313	Amphilophus_citrinellus
ENSOMEG00000010838	smg6	100	70.306	ENSAOCG00000002630	smg6	100	69.886	Amphiprion_ocellaris
ENSOMEG00000010838	smg6	100	70.006	ENSAPEG00000019101	smg6	100	69.586	Amphiprion_percula
ENSOMEG00000010838	smg6	100	68.452	ENSATEG00000006483	smg6	100	67.619	Anabas_testudineus
ENSOMEG00000010838	smg6	62	49.328	ENSACAG00000011783	SMG6	72	52.784	Anolis_carolinensis
ENSOMEG00000010838	smg6	75	54.167	ENSANAG00000035760	SMG6	83	53.774	Aotus_nancymaae
ENSOMEG00000010838	smg6	100	68.851	ENSACLG00000005288	smg6	100	69.156	Astatotilapia_calliptera
ENSOMEG00000010838	smg6	75	66.729	ENSAMXG00000017326	smg6	88	66.729	Astyanax_mexicanus
ENSOMEG00000010838	smg6	75	53.870	ENSBTAG00000000267	SMG6	83	53.470	Bos_taurus
ENSOMEG00000010838	smg6	75	54.438	ENSCJAG00000001820	SMG6	83	53.695	Callithrix_jacchus
ENSOMEG00000010838	smg6	75	54.058	ENSCAFG00000019260	SMG6	83	53.937	Canis_familiaris
ENSOMEG00000010838	smg6	75	54.058	ENSCAFG00020009770	SMG6	83	53.937	Canis_lupus_dingo
ENSOMEG00000010838	smg6	75	53.949	ENSCHIG00000021998	SMG6	83	53.191	Capra_hircus
ENSOMEG00000010838	smg6	75	53.333	ENSTSYG00000003406	SMG6	100	56.137	Carlito_syrichta
ENSOMEG00000010838	smg6	75	44.929	ENSCAPG00000016197	SMG6	81	51.020	Cavia_aperea
ENSOMEG00000010838	smg6	75	53.512	ENSCPOG00000014878	SMG6	83	59.330	Cavia_porcellus
ENSOMEG00000010838	smg6	75	54.009	ENSCCAG00000035801	SMG6	83	53.406	Cebus_capucinus
ENSOMEG00000010838	smg6	75	53.901	ENSCATG00000031956	SMG6	83	53.459	Cercocebus_atys
ENSOMEG00000010838	smg6	79	52.460	ENSCLAG00000006748	SMG6	82	58.852	Chinchilla_lanigera
ENSOMEG00000010838	smg6	75	54.137	ENSCSAG00000013800	SMG6	83	53.695	Chlorocebus_sabaeus
ENSOMEG00000010838	smg6	80	52.496	ENSCPBG00000020369	SMG6	82	53.034	Chrysemys_picta_bellii
ENSOMEG00000010838	smg6	75	53.980	ENSCANG00000031764	SMG6	100	57.040	Colobus_angolensis_palliatus
ENSOMEG00000010838	smg6	75	49.444	ENSCGRG00000007782	Smg6	89	47.487	Cricetulus_griseus_crigri
ENSOMEG00000010838	smg6	100	64.363	ENSCSEG00000012757	smg6	99	65.703	Cynoglossus_semilaevis
ENSOMEG00000010838	smg6	100	66.367	ENSCVAG00000012789	smg6	100	66.427	Cyprinodon_variegatus
ENSOMEG00000010838	smg6	100	54.556	ENSDARG00000100481	smg6	100	54.179	Danio_rerio
ENSOMEG00000010838	smg6	75	53.785	ENSDNOG00000048283	SMG6	83	53.302	Dasypus_novemcinctus
ENSOMEG00000010838	smg6	75	50.275	ENSDORG00000016614	Smg6	83	58.852	Dipodomys_ordii
ENSOMEG00000010838	smg6	62	87.500	ENSETEG00000016790	SMG6	70	87.500	Echinops_telfairi
ENSOMEG00000010838	smg6	60	46.784	ENSEBUG00000005059	smg6	63	46.550	Eptatretus_burgeri
ENSOMEG00000010838	smg6	75	54.495	ENSEASG00005009318	SMG6	83	54.101	Equus_asinus_asinus
ENSOMEG00000010838	smg6	75	54.495	ENSECAG00000006519	SMG6	83	54.022	Equus_caballus
ENSOMEG00000010838	smg6	75	46.282	ENSEEUG00000003493	SMG6	84	45.899	Erinaceus_europaeus
ENSOMEG00000010838	smg6	94	63.307	ENSELUG00000005934	smg6	81	68.526	Esox_lucius
ENSOMEG00000010838	smg6	75	54.144	ENSFCAG00000028817	SMG6	83	53.785	Felis_catus
ENSOMEG00000010838	smg6	83	50.742	ENSFALG00000006538	SMG6	90	51.896	Ficedula_albicollis
ENSOMEG00000010838	smg6	79	52.374	ENSFDAG00000015106	SMG6	82	58.852	Fukomys_damarensis
ENSOMEG00000010838	smg6	100	67.730	ENSFHEG00000013282	smg6	100	67.470	Fundulus_heteroclitus
ENSOMEG00000010838	smg6	78	52.795	ENSGALG00000003108	SMG6	97	52.564	Gallus_gallus
ENSOMEG00000010838	smg6	100	68.135	ENSGAFG00000000379	smg6	100	67.654	Gambusia_affinis
ENSOMEG00000010838	smg6	80	73.569	ENSGACG00000020521	smg6	98	73.490	Gasterosteus_aculeatus
ENSOMEG00000010838	smg6	75	52.913	ENSGAGG00000025617	SMG6	84	52.184	Gopherus_agassizii
ENSOMEG00000010838	smg6	75	54.016	ENSGGOG00000017156	SMG6	83	53.538	Gorilla_gorilla
ENSOMEG00000010838	smg6	100	68.671	ENSHBUG00000021311	smg6	100	67.750	Haplochromis_burtoni
ENSOMEG00000010838	smg6	79	52.822	ENSHGLG00000012882	SMG6	82	59.330	Heterocephalus_glaber_female
ENSOMEG00000010838	smg6	75	54.409	ENSHGLG00100017815	SMG6	82	59.330	Heterocephalus_glaber_male
ENSOMEG00000010838	smg6	70	64.802	ENSHCOG00000008761	smg6	87	65.810	Hippocampus_comes
ENSOMEG00000010838	smg6	100	52.375	ENSIPUG00000012493	smg6	76	60.556	Ictalurus_punctatus
ENSOMEG00000010838	smg6	75	53.785	ENSSTOG00000028127	SMG6	83	58.852	Ictidomys_tridecemlineatus
ENSOMEG00000010838	smg6	59	48.902	ENSJJAG00000015367	Smg6	79	47.674	Jaculus_jaculus
ENSOMEG00000010838	smg6	100	69.069	ENSKMAG00000000279	smg6	100	67.855	Kryptolebias_marmoratus
ENSOMEG00000010838	smg6	100	66.567	ENSLBEG00000002184	smg6	100	65.456	Labrus_bergylta
ENSOMEG00000010838	smg6	66	64.749	ENSLOCG00000006448	smg6	99	54.467	Lepisosteus_oculatus
ENSOMEG00000010838	smg6	75	53.543	ENSLAFG00000001261	SMG6	83	53.365	Loxodonta_africana
ENSOMEG00000010838	smg6	75	54.137	ENSMFAG00000003394	SMG6	83	53.695	Macaca_fascicularis
ENSOMEG00000010838	smg6	75	54.058	ENSMMUG00000023161	SMG6	83	53.616	Macaca_mulatta
ENSOMEG00000010838	smg6	75	52.133	ENSMNEG00000044592	SMG6	83	51.694	Macaca_nemestrina
ENSOMEG00000010838	smg6	70	58.772	ENSMLEG00000029353	SMG6	87	58.596	Mandrillus_leucophaeus
ENSOMEG00000010838	smg6	100	68.481	ENSMAMG00000020119	smg6	100	68.452	Mastacembelus_armatus
ENSOMEG00000010838	smg6	100	68.851	ENSMZEG00005024736	smg6	100	67.930	Maylandia_zebra
ENSOMEG00000010838	smg6	54	50.972	ENSMGAG00000005401	-	81	50.377	Meleagris_gallopavo
ENSOMEG00000010838	smg6	75	54.065	ENSMICG00000012913	SMG6	83	53.507	Microcebus_murinus
ENSOMEG00000010838	smg6	100	63.526	ENSMMOG00000010883	smg6	100	63.222	Mola_mola
ENSOMEG00000010838	smg6	78	53.348	ENSMODG00000010622	SMG6	88	52.216	Monodelphis_domestica
ENSOMEG00000010838	smg6	100	67.840	ENSMALG00000001106	smg6	100	66.766	Monopterus_albus
ENSOMEG00000010838	smg6	75	53.402	MGP_CAROLIEiJ_G0016729	Smg6	97	63.324	Mus_caroli
ENSOMEG00000010838	smg6	75	53.417	ENSMUSG00000038290	Smg6	97	63.610	Mus_musculus
ENSOMEG00000010838	smg6	75	53.029	MGP_PahariEiJ_G0017866	Smg6	97	63.429	Mus_pahari
ENSOMEG00000010838	smg6	75	53.339	MGP_SPRETEiJ_G0017572	Smg6	97	63.324	Mus_spretus
ENSOMEG00000010838	smg6	75	54.046	ENSMPUG00000013046	SMG6	83	53.785	Mustela_putorius_furo
ENSOMEG00000010838	smg6	75	54.229	ENSMLUG00000005739	SMG6	83	53.828	Myotis_lucifugus
ENSOMEG00000010838	smg6	75	53.586	ENSNGAG00000007287	Smg6	83	58.852	Nannospalax_galili
ENSOMEG00000010838	smg6	97	66.811	ENSNBRG00000009511	smg6	99	67.485	Neolamprologus_brichardi
ENSOMEG00000010838	smg6	75	53.858	ENSNLEG00000017171	SMG6	100	56.679	Nomascus_leucogenys
ENSOMEG00000010838	smg6	78	52.453	ENSMEUG00000015804	SMG6	89	52.226	Notamacropus_eugenii
ENSOMEG00000010838	smg6	52	60.622	ENSOPRG00000000579	SMG6	80	60.101	Ochotona_princeps
ENSOMEG00000010838	smg6	75	48.113	ENSODEG00000008038	SMG6	81	53.179	Octodon_degus
ENSOMEG00000010838	smg6	100	68.889	ENSONIG00000005594	smg6	100	74.120	Oreochromis_niloticus
ENSOMEG00000010838	smg6	75	53.864	ENSOCUG00000013018	SMG6	83	53.186	Oryctolagus_cuniculus
ENSOMEG00000010838	smg6	100	90.128	ENSORLG00000003317	smg6	100	89.031	Oryzias_latipes
ENSOMEG00000010838	smg6	100	90.000	ENSORLG00020015343	smg6	100	88.902	Oryzias_latipes_hni
ENSOMEG00000010838	smg6	100	90.183	ENSORLG00015020454	smg6	100	89.085	Oryzias_latipes_hsok
ENSOMEG00000010838	smg6	75	54.137	ENSOGAG00000004483	SMG6	83	53.501	Otolemur_garnettii
ENSOMEG00000010838	smg6	75	53.949	ENSOARG00000015076	SMG6	85	53.470	Ovis_aries
ENSOMEG00000010838	smg6	75	53.858	ENSPPAG00000043296	SMG6	83	53.381	Pan_paniscus
ENSOMEG00000010838	smg6	75	54.301	ENSPPRG00000014581	SMG6	83	53.943	Panthera_pardus
ENSOMEG00000010838	smg6	75	54.301	ENSPTIG00000008925	SMG6	100	56.679	Panthera_tigris_altaica
ENSOMEG00000010838	smg6	75	54.016	ENSPTRG00000008544	SMG6	100	56.679	Pan_troglodytes
ENSOMEG00000010838	smg6	75	54.058	ENSPANG00000024588	SMG6	83	53.616	Papio_anubis
ENSOMEG00000010838	smg6	67	51.325	ENSPSIG00000006660	SMG6	79	51.578	Pelodiscus_sinensis
ENSOMEG00000010838	smg6	94	77.100	ENSPMGG00000000844	smg6	99	75.577	Periophthalmus_magnuspinnatus
ENSOMEG00000010838	smg6	79	51.955	ENSPEMG00000020707	Smg6	84	58.373	Peromyscus_maniculatus_bairdii
ENSOMEG00000010838	smg6	100	68.130	ENSPFOG00000012035	smg6	100	72.664	Poecilia_formosa
ENSOMEG00000010838	smg6	100	68.584	ENSPLAG00000017660	smg6	100	67.773	Poecilia_latipinna
ENSOMEG00000010838	smg6	100	68.130	ENSPMEG00000000258	smg6	100	67.773	Poecilia_mexicana
ENSOMEG00000010838	smg6	100	67.647	ENSPREG00000010066	smg6	100	67.590	Poecilia_reticulata
ENSOMEG00000010838	smg6	75	50.000	ENSPPYG00000007790	SMG6	83	49.726	Pongo_abelii
ENSOMEG00000010838	smg6	71	58.277	ENSPCAG00000000552	SMG6	79	58.050	Procavia_capensis
ENSOMEG00000010838	smg6	75	53.828	ENSPCOG00000020925	SMG6	83	53.307	Propithecus_coquereli
ENSOMEG00000010838	smg6	71	61.381	ENSPVAG00000002159	SMG6	73	53.190	Pteropus_vampyrus
ENSOMEG00000010838	smg6	93	66.969	ENSPNYG00000024151	smg6	99	67.419	Pundamilia_nyererei
ENSOMEG00000010838	smg6	77	58.089	ENSPNAG00000015480	smg6	77	68.522	Pygocentrus_nattereri
ENSOMEG00000010838	smg6	79	51.696	ENSRNOG00000003041	Smg6	97	63.610	Rattus_norvegicus
ENSOMEG00000010838	smg6	75	54.137	ENSRBIG00000024746	SMG6	83	53.852	Rhinopithecus_bieti
ENSOMEG00000010838	smg6	75	54.137	ENSRROG00000030423	SMG6	100	57.559	Rhinopithecus_roxellana
ENSOMEG00000010838	smg6	75	53.931	ENSSBOG00000022518	SMG6	83	51.684	Saimiri_boliviensis_boliviensis
ENSOMEG00000010838	smg6	78	52.914	ENSSHAG00000010045	SMG6	87	52.273	Sarcophilus_harrisii
ENSOMEG00000010838	smg6	100	66.905	ENSSMAG00000019777	smg6	100	65.832	Scophthalmus_maximus
ENSOMEG00000010838	smg6	100	70.848	ENSSDUG00000016412	smg6	100	69.594	Seriola_dumerili
ENSOMEG00000010838	smg6	90	71.231	ENSSLDG00000020747	smg6	98	69.914	Seriola_lalandi_dorsalis
ENSOMEG00000010838	smg6	75	52.988	ENSSPUG00000007152	SMG6	73	55.595	Sphenodon_punctatus
ENSOMEG00000010838	smg6	100	70.384	ENSSPAG00000015633	smg6	100	69.922	Stegastes_partitus
ENSOMEG00000010838	smg6	75	54.107	ENSSSCG00000017826	SMG6	83	53.233	Sus_scrofa
ENSOMEG00000010838	smg6	79	52.158	ENSTGUG00000005836	SMG6	89	51.786	Taeniopygia_guttata
ENSOMEG00000010838	smg6	91	63.957	ENSTRUG00000000358	smg6	98	64.003	Takifugu_rubripes
ENSOMEG00000010838	smg6	95	70.602	ENSTNIG00000016164	smg6	100	70.223	Tetraodon_nigroviridis
ENSOMEG00000010838	smg6	75	52.260	ENSTBEG00000011424	SMG6	83	51.456	Tupaia_belangeri
ENSOMEG00000010838	smg6	67	55.271	ENSTTRG00000001175	SMG6	74	54.701	Tursiops_truncatus
ENSOMEG00000010838	smg6	75	53.901	ENSUAMG00000025152	SMG6	85	53.470	Ursus_americanus
ENSOMEG00000010838	smg6	75	53.980	ENSUMAG00000009306	SMG6	85	53.549	Ursus_maritimus
ENSOMEG00000010838	smg6	61	88.889	ENSVPAG00000000225	SMG6	70	88.889	Vicugna_pacos
ENSOMEG00000010838	smg6	75	54.553	ENSVVUG00000021727	SMG6	84	54.069	Vulpes_vulpes
ENSOMEG00000010838	smg6	67	53.501	ENSXETG00000023799	SMG6	74	53.632	Xenopus_tropicalis
ENSOMEG00000010838	smg6	98	66.380	ENSXCOG00000009867	smg6	99	66.032	Xiphophorus_couchianus
ENSOMEG00000010838	smg6	100	68.389	ENSXMAG00000010321	smg6	100	67.930	Xiphophorus_maculatus