EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSOMEG00000011849 (Gene tree)
Gene ID: 112136270
Gene Symbol: cpsf1
Alias: -
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Oryzias_melastigma
Status: putative
Strand: Minus strand
Length: 17909 bases
Position: chrNVQA01000032.1:1893620-1911528
Accession: 112136270
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOMEP00000010559	CPSF_A	PF03178.15	2e-93	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOMET00000031983	-	5732	-	ENSOMEP00000010559	1461 (aa)	XP_024113638	UPI000CF7FDF0
ENSOMET00000017315	-	1188	-	ENSOMEP00000010485	395 (aa)	-	-

Gene Model

Click here to download ENSOMEG00000011849's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOMEG00000011849's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOMEG00000011849	cpsf1	100	77.263	ENSG00000071894	CPSF1	100	77.778	Homo_sapiens
ENSOMEG00000011849	cpsf1	100	90.020	ENSAPOG00000019621	cpsf1	100	90.428	Acanthochromis_polyacanthus
ENSOMEG00000011849	cpsf1	97	76.281	ENSAMEG00000005557	CPSF1	99	76.667	Ailuropoda_melanoleuca
ENSOMEG00000011849	cpsf1	100	88.063	ENSACIG00000006112	cpsf1	100	87.995	Amphilophus_citrinellus
ENSOMEG00000011849	cpsf1	100	88.602	ENSAOCG00000007120	cpsf1	100	88.535	Amphiprion_ocellaris
ENSOMEG00000011849	cpsf1	100	89.281	ENSAPEG00000005755	cpsf1	100	89.349	Amphiprion_percula
ENSOMEG00000011849	cpsf1	100	90.237	ENSATEG00000011097	cpsf1	100	90.508	Anabas_testudineus
ENSOMEG00000011849	cpsf1	93	74.854	ENSACAG00000009655	CPSF1	100	74.708	Anolis_carolinensis
ENSOMEG00000011849	cpsf1	100	77.740	ENSANAG00000036514	CPSF1	100	77.446	Aotus_nancymaae
ENSOMEG00000011849	cpsf1	99	90.460	ENSACLG00000012231	cpsf1	99	90.446	Astatotilapia_calliptera
ENSOMEG00000011849	cpsf1	100	77.687	ENSAMXG00000008485	cpsf1	100	77.551	Astyanax_mexicanus
ENSOMEG00000011849	cpsf1	100	76.270	ENSBTAG00000008355	CPSF1	100	76.620	Bos_taurus
ENSOMEG00000011849	cpsf1	100	31.777	WBGene00022301	cpsf-1	99	40.395	Caenorhabditis_elegans
ENSOMEG00000011849	cpsf1	100	77.808	ENSCJAG00000021421	CPSF1	100	77.242	Callithrix_jacchus
ENSOMEG00000011849	cpsf1	96	78.013	ENSCAFG00000001600	CPSF1	99	78.282	Canis_familiaris
ENSOMEG00000011849	cpsf1	100	77.498	ENSCAFG00020020821	CPSF1	100	77.430	Canis_lupus_dingo
ENSOMEG00000011849	cpsf1	100	73.860	ENSCHIG00000015833	CPSF1	100	73.338	Capra_hircus
ENSOMEG00000011849	cpsf1	100	78.080	ENSTSYG00000028560	CPSF1	100	78.704	Carlito_syrichta
ENSOMEG00000011849	cpsf1	97	76.934	ENSCAPG00000014921	CPSF1	98	77.234	Cavia_aperea
ENSOMEG00000011849	cpsf1	100	76.447	ENSCPOG00000011448	CPSF1	100	76.106	Cavia_porcellus
ENSOMEG00000011849	cpsf1	100	77.876	ENSCCAG00000037658	CPSF1	100	77.982	Cebus_capucinus
ENSOMEG00000011849	cpsf1	100	77.263	ENSCATG00000037234	CPSF1	99	79.104	Cercocebus_atys
ENSOMEG00000011849	cpsf1	100	77.725	ENSCLAG00000012166	CPSF1	100	77.452	Chinchilla_lanigera
ENSOMEG00000011849	cpsf1	100	77.672	ENSCSAG00000008502	CPSF1	100	77.106	Chlorocebus_sabaeus
ENSOMEG00000011849	cpsf1	99	80.275	ENSCPBG00000018910	CPSF1	96	80.275	Chrysemys_picta_bellii
ENSOMEG00000011849	cpsf1	96	48.054	ENSCING00000000514	-	100	47.912	Ciona_intestinalis
ENSOMEG00000011849	cpsf1	99	48.477	ENSCSAVG00000002293	-	98	51.643	Ciona_savignyi
ENSOMEG00000011849	cpsf1	98	75.000	ENSCANG00000032760	CPSF1	100	78.241	Colobus_angolensis_palliatus
ENSOMEG00000011849	cpsf1	100	77.793	ENSCGRG00001016344	Cpsf1	100	77.452	Cricetulus_griseus_chok1gshd
ENSOMEG00000011849	cpsf1	100	76.022	ENSCGRG00000003118	Cpsf1	100	75.545	Cricetulus_griseus_crigri
ENSOMEG00000011849	cpsf1	100	86.016	ENSCSEG00000013464	cpsf1	99	87.737	Cynoglossus_semilaevis
ENSOMEG00000011849	cpsf1	85	86.753	ENSCVAG00000014059	cpsf1	100	82.407	Cyprinodon_variegatus
ENSOMEG00000011849	cpsf1	100	85.258	ENSDARG00000034178	cpsf1	100	85.326	Danio_rerio
ENSOMEG00000011849	cpsf1	57	80.058	ENSDNOG00000043654	CPSF1	94	79.769	Dasypus_novemcinctus
ENSOMEG00000011849	cpsf1	97	77.856	ENSDORG00000006278	Cpsf1	99	78.061	Dipodomys_ordii
ENSOMEG00000011849	cpsf1	100	43.692	FBgn0024698	Cpsf160	100	43.329	Drosophila_melanogaster
ENSOMEG00000011849	cpsf1	81	82.550	ENSETEG00000006022	CPSF1	83	82.550	Echinops_telfairi
ENSOMEG00000011849	cpsf1	100	77.702	ENSEASG00005010774	CPSF1	100	77.770	Equus_asinus_asinus
ENSOMEG00000011849	cpsf1	100	77.566	ENSECAG00000022209	CPSF1	100	77.634	Equus_caballus
ENSOMEG00000011849	cpsf1	100	77.649	ENSEEUG00000000471	CPSF1	100	77.446	Erinaceus_europaeus
ENSOMEG00000011849	cpsf1	100	84.253	ENSELUG00000012271	cpsf1	100	84.362	Esox_lucius
ENSOMEG00000011849	cpsf1	100	77.861	ENSFDAG00000016060	CPSF1	100	77.589	Fukomys_damarensis
ENSOMEG00000011849	cpsf1	100	88.179	ENSFHEG00000016801	cpsf1	100	88.103	Fundulus_heteroclitus
ENSOMEG00000011849	cpsf1	100	84.422	ENSGMOG00000000796	cpsf1	100	84.793	Gadus_morhua
ENSOMEG00000011849	cpsf1	96	87.500	ENSGAFG00000018890	cpsf1	100	87.500	Gambusia_affinis
ENSOMEG00000011849	cpsf1	100	87.475	ENSGACG00000008703	cpsf1	100	87.475	Gasterosteus_aculeatus
ENSOMEG00000011849	cpsf1	100	77.461	ENSGAGG00000004276	CPSF1	98	81.445	Gopherus_agassizii
ENSOMEG00000011849	cpsf1	100	77.520	ENSGGOG00000016185	CPSF1	100	77.778	Gorilla_gorilla
ENSOMEG00000011849	cpsf1	100	89.802	ENSHBUG00000018900	cpsf1	100	89.665	Haplochromis_burtoni
ENSOMEG00000011849	cpsf1	100	77.793	ENSHGLG00000016139	CPSF1	100	77.452	Heterocephalus_glaber_female
ENSOMEG00000011849	cpsf1	100	77.725	ENSHGLG00100009750	CPSF1	100	77.452	Heterocephalus_glaber_male
ENSOMEG00000011849	cpsf1	100	88.215	ENSHCOG00000018509	cpsf1	100	88.147	Hippocampus_comes
ENSOMEG00000011849	cpsf1	100	81.369	ENSIPUG00000011259	cpsf1	100	81.026	Ictalurus_punctatus
ENSOMEG00000011849	cpsf1	97	77.435	ENSSTOG00000009957	CPSF1	98	77.809	Ictidomys_tridecemlineatus
ENSOMEG00000011849	cpsf1	100	77.929	ENSJJAG00000023002	Cpsf1	100	77.725	Jaculus_jaculus
ENSOMEG00000011849	cpsf1	91	93.417	ENSKMAG00000001940	cpsf1	99	93.417	Kryptolebias_marmoratus
ENSOMEG00000011849	cpsf1	100	87.883	ENSLBEG00000003601	cpsf1	100	88.171	Labrus_bergylta
ENSOMEG00000011849	cpsf1	87	78.708	ENSLACG00000000233	CPSF1	92	78.589	Latimeria_chalumnae
ENSOMEG00000011849	cpsf1	100	81.318	ENSLOCG00000008484	cpsf1	100	81.454	Lepisosteus_oculatus
ENSOMEG00000011849	cpsf1	97	77.458	ENSLAFG00000022601	CPSF1	99	77.928	Loxodonta_africana
ENSOMEG00000011849	cpsf1	100	77.400	ENSMFAG00000037013	CPSF1	99	79.104	Macaca_fascicularis
ENSOMEG00000011849	cpsf1	100	77.413	ENSMMUG00000007380	CPSF1	98	79.872	Macaca_mulatta
ENSOMEG00000011849	cpsf1	97	77.762	ENSMNEG00000043564	CPSF1	100	77.778	Macaca_nemestrina
ENSOMEG00000011849	cpsf1	100	77.400	ENSMLEG00000043010	CPSF1	99	79.104	Mandrillus_leucophaeus
ENSOMEG00000011849	cpsf1	100	90.570	ENSMAMG00000003803	cpsf1	100	90.767	Mastacembelus_armatus
ENSOMEG00000011849	cpsf1	100	86.379	ENSMZEG00005001168	cpsf1	100	86.242	Maylandia_zebra
ENSOMEG00000011849	cpsf1	100	77.725	ENSMAUG00000003601	Cpsf1	100	77.589	Mesocricetus_auratus
ENSOMEG00000011849	cpsf1	100	77.520	ENSMICG00000015767	CPSF1	100	77.112	Microcebus_murinus
ENSOMEG00000011849	cpsf1	100	77.725	ENSMOCG00000022758	Cpsf1	100	77.520	Microtus_ochrogaster
ENSOMEG00000011849	cpsf1	100	88.624	ENSMMOG00000021245	cpsf1	100	88.147	Mola_mola
ENSOMEG00000011849	cpsf1	100	78.252	ENSMODG00000010755	CPSF1	100	78.252	Monodelphis_domestica
ENSOMEG00000011849	cpsf1	100	90.143	ENSMALG00000020545	cpsf1	100	90.279	Monopterus_albus
ENSOMEG00000011849	cpsf1	100	78.065	MGP_CAROLIEiJ_G0019936	Cpsf1	100	77.861	Mus_caroli
ENSOMEG00000011849	cpsf1	100	77.997	ENSMUSG00000034022	Cpsf1	100	77.793	Mus_musculus
ENSOMEG00000011849	cpsf1	100	78.134	MGP_PahariEiJ_G0019946	Cpsf1	100	77.929	Mus_pahari
ENSOMEG00000011849	cpsf1	100	78.065	MGP_SPRETEiJ_G0020839	Cpsf1	100	77.861	Mus_spretus
ENSOMEG00000011849	cpsf1	94	78.052	ENSMPUG00000006419	CPSF1	93	78.198	Mustela_putorius_furo
ENSOMEG00000011849	cpsf1	100	77.929	ENSNGAG00000022460	Cpsf1	100	77.657	Nannospalax_galili
ENSOMEG00000011849	cpsf1	94	91.321	ENSNBRG00000000813	cpsf1	97	91.321	Neolamprologus_brichardi
ENSOMEG00000011849	cpsf1	86	69.507	ENSNLEG00000010633	-	100	77.778	Nomascus_leucogenys
ENSOMEG00000011849	cpsf1	82	83.721	ENSMEUG00000014922	CPSF1	84	83.721	Notamacropus_eugenii
ENSOMEG00000011849	cpsf1	61	84.211	ENSOPRG00000004693	-	70	84.211	Ochotona_princeps
ENSOMEG00000011849	cpsf1	100	77.793	ENSODEG00000013995	CPSF1	100	77.520	Octodon_degus
ENSOMEG00000011849	cpsf1	100	89.510	ENSONIG00000007676	cpsf1	100	89.305	Oreochromis_niloticus
ENSOMEG00000011849	cpsf1	59	78.571	ENSOANG00000010716	CPSF1	89	78.571	Ornithorhynchus_anatinus
ENSOMEG00000011849	cpsf1	100	95.902	ENSORLG00000013544	cpsf1	100	95.970	Oryzias_latipes
ENSOMEG00000011849	cpsf1	100	96.038	ENSORLG00020021693	cpsf1	100	96.107	Oryzias_latipes_hni
ENSOMEG00000011849	cpsf1	100	95.902	ENSORLG00015009979	cpsf1	100	95.970	Oryzias_latipes_hsok
ENSOMEG00000011849	cpsf1	100	77.808	ENSOGAG00000000315	CPSF1	100	77.536	Otolemur_garnettii
ENSOMEG00000011849	cpsf1	100	77.536	ENSPPAG00000019280	CPSF1	100	79.186	Pan_paniscus
ENSOMEG00000011849	cpsf1	100	77.536	ENSPTRG00000049288	-	100	79.186	Pan_troglodytes
ENSOMEG00000011849	cpsf1	100	76.238	ENSPTRG00000051253	-	100	79.186	Pan_troglodytes
ENSOMEG00000011849	cpsf1	97	77.762	ENSPANG00000015005	CPSF1	100	77.778	Papio_anubis
ENSOMEG00000011849	cpsf1	100	85.024	ENSPKIG00000002582	cpsf1	100	85.193	Paramormyrops_kingsleyae
ENSOMEG00000011849	cpsf1	100	78.320	ENSPCIG00000009035	CPSF1	100	78.320	Phascolarctos_cinereus
ENSOMEG00000011849	cpsf1	100	89.674	ENSPFOG00000012870	cpsf1	100	89.946	Poecilia_formosa
ENSOMEG00000011849	cpsf1	100	89.885	ENSPREG00000016307	cpsf1	100	90.360	Poecilia_reticulata
ENSOMEG00000011849	cpsf1	100	70.952	ENSPPYG00000018973	CPSF1	100	70.333	Pongo_abelii
ENSOMEG00000011849	cpsf1	91	82.955	ENSPCAG00000011541	CPSF1	93	82.955	Procavia_capensis
ENSOMEG00000011849	cpsf1	100	73.928	ENSPCOG00000020001	CPSF1	100	77.778	Propithecus_coquereli
ENSOMEG00000011849	cpsf1	91	85.429	ENSPVAG00000006761	CPSF1	91	85.429	Pteropus_vampyrus
ENSOMEG00000011849	cpsf1	100	90.551	ENSPNYG00000004906	cpsf1	100	90.551	Pundamilia_nyererei
ENSOMEG00000011849	cpsf1	100	80.191	ENSPNAG00000024395	cpsf1	100	79.986	Pygocentrus_nattereri
ENSOMEG00000011849	cpsf1	100	77.967	ENSRNOG00000030705	Cpsf1	100	77.763	Rattus_norvegicus
ENSOMEG00000011849	cpsf1	100	77.468	ENSRBIG00000044907	CPSF1	100	78.241	Rhinopithecus_bieti
ENSOMEG00000011849	cpsf1	100	77.536	ENSRROG00000044861	CPSF1	100	78.241	Rhinopithecus_roxellana
ENSOMEG00000011849	cpsf1	97	78.154	ENSSBOG00000027177	CPSF1	99	77.864	Saimiri_boliviensis_boliviensis
ENSOMEG00000011849	cpsf1	100	78.455	ENSSHAG00000006500	CPSF1	100	78.455	Sarcophilus_harrisii
ENSOMEG00000011849	cpsf1	100	83.299	ENSSFOG00015004606	cpsf1	100	85.571	Scleropages_formosus
ENSOMEG00000011849	cpsf1	100	88.942	ENSSMAG00000020547	cpsf1	100	89.349	Scophthalmus_maximus
ENSOMEG00000011849	cpsf1	100	89.330	ENSSDUG00000001100	cpsf1	100	89.056	Seriola_dumerili
ENSOMEG00000011849	cpsf1	100	89.535	ENSSLDG00000003619	cpsf1	100	89.193	Seriola_lalandi_dorsalis
ENSOMEG00000011849	cpsf1	89	74.288	ENSSARG00000003643	CPSF1	92	74.209	Sorex_araneus
ENSOMEG00000011849	cpsf1	96	81.047	ENSSPUG00000014396	CPSF1	100	81.047	Sphenodon_punctatus
ENSOMEG00000011849	cpsf1	100	90.428	ENSSPAG00000005349	cpsf1	100	90.903	Stegastes_partitus
ENSOMEG00000011849	cpsf1	100	76.615	ENSSSCG00000005906	CPSF1	100	76.683	Sus_scrofa
ENSOMEG00000011849	cpsf1	96	87.685	ENSTRUG00000013134	cpsf1	99	87.456	Takifugu_rubripes
ENSOMEG00000011849	cpsf1	100	86.983	ENSTNIG00000014027	cpsf1	100	86.847	Tetraodon_nigroviridis
ENSOMEG00000011849	cpsf1	78	71.144	ENSTBEG00000001756	CPSF1	91	70.647	Tupaia_belangeri
ENSOMEG00000011849	cpsf1	89	82.069	ENSTTRG00000001937	CPSF1	90	81.897	Tursiops_truncatus
ENSOMEG00000011849	cpsf1	97	77.879	ENSUAMG00000006476	CPSF1	97	78.282	Ursus_americanus
ENSOMEG00000011849	cpsf1	100	88.706	ENSXCOG00000003608	cpsf1	100	88.638	Xiphophorus_couchianus
ENSOMEG00000011849	cpsf1	100	87.910	ENSXMAG00000005798	cpsf1	100	87.782	Xiphophorus_maculatus