EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSOMEG00000012229 (Gene tree)
Gene ID: 112161775
Gene Symbol: si:ch211-117n7.8
Alias: -
Full Name: S1 RNA binding domain 1
Gene Type: protein_coding
Species: Oryzias_melastigma
Status: putative
Strand: Plus strand
Length: 63486 bases
Position: chrNVQA01000028.1:13146905-13210390
Accession: 112161775
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOMEP00000028906	S1	PF00575.23	9.3e-13	1	1
ENSOMEP00000010904	S1	PF00575.23	1.5e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOMET00000017843	-	5009	-	ENSOMEP00000010904	915 (aa)	-	-
ENSOMET00000017879	-	5291	-	ENSOMEP00000028906	1009 (aa)	XP_024152988	UPI000CF801A0

Gene Model

Click here to download ENSOMEG00000012229's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOMEG00000012229's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOMEG00000012229	si:ch211-117n7.8	83	55.427	ENSG00000068784	SRBD1	98	49.559	Homo_sapiens
ENSOMEG00000012229	si:ch211-117n7.8	99	78.947	ENSAPOG00000005103	si:ch211-117n7.8	99	74.560	Acanthochromis_polyacanthus
ENSOMEG00000012229	si:ch211-117n7.8	92	52.714	ENSAMEG00000005993	SRBD1	95	52.296	Ailuropoda_melanoleuca
ENSOMEG00000012229	si:ch211-117n7.8	96	81.061	ENSACIG00000009875	si:ch211-117n7.8	99	75.935	Amphilophus_citrinellus
ENSOMEG00000012229	si:ch211-117n7.8	99	77.736	ENSAOCG00000024718	si:ch211-117n7.8	100	74.172	Amphiprion_ocellaris
ENSOMEG00000012229	si:ch211-117n7.8	97	80.000	ENSAPEG00000002645	si:ch211-117n7.8	100	75.076	Amphiprion_percula
ENSOMEG00000012229	si:ch211-117n7.8	99	79.167	ENSATEG00000010844	si:ch211-117n7.8	99	72.370	Anabas_testudineus
ENSOMEG00000012229	si:ch211-117n7.8	85	56.013	ENSAPLG00000006313	SRBD1	97	52.016	Anas_platyrhynchos
ENSOMEG00000012229	si:ch211-117n7.8	83	54.850	ENSANAG00000025573	SRBD1	86	54.850	Aotus_nancymaae
ENSOMEG00000012229	si:ch211-117n7.8	99	81.061	ENSACLG00000024219	si:ch211-117n7.8	95	81.061	Astatotilapia_calliptera
ENSOMEG00000012229	si:ch211-117n7.8	99	68.561	ENSAMXG00000004294	SRBD1	99	63.627	Astyanax_mexicanus
ENSOMEG00000012229	si:ch211-117n7.8	82	56.754	ENSBTAG00000007508	SRBD1	81	56.161	Bos_taurus
ENSOMEG00000012229	si:ch211-117n7.8	68	33.333	WBGene00022830	ZK973.1	85	33.333	Caenorhabditis_elegans
ENSOMEG00000012229	si:ch211-117n7.8	95	50.859	ENSCJAG00000000727	SRBD1	98	49.852	Callithrix_jacchus
ENSOMEG00000012229	si:ch211-117n7.8	97	50.050	ENSCAFG00000002554	SRBD1	98	49.306	Canis_familiaris
ENSOMEG00000012229	si:ch211-117n7.8	96	52.650	ENSCAFG00020026284	SRBD1	98	56.190	Canis_lupus_dingo
ENSOMEG00000012229	si:ch211-117n7.8	82	56.754	ENSCHIG00000016535	SRBD1	82	56.161	Capra_hircus
ENSOMEG00000012229	si:ch211-117n7.8	97	51.051	ENSTSYG00000012797	SRBD1	99	50.049	Carlito_syrichta
ENSOMEG00000012229	si:ch211-117n7.8	93	53.046	ENSCPOG00000004773	SRBD1	96	52.787	Cavia_porcellus
ENSOMEG00000012229	si:ch211-117n7.8	83	55.312	ENSCCAG00000025589	SRBD1	86	55.312	Cebus_capucinus
ENSOMEG00000012229	si:ch211-117n7.8	83	55.556	ENSCATG00000039530	SRBD1	86	55.324	Cercocebus_atys
ENSOMEG00000012229	si:ch211-117n7.8	93	53.416	ENSCLAG00000008623	SRBD1	96	52.953	Chinchilla_lanigera
ENSOMEG00000012229	si:ch211-117n7.8	97	50.197	ENSCSAG00000013350	SRBD1	96	51.636	Chlorocebus_sabaeus
ENSOMEG00000012229	si:ch211-117n7.8	75	67.347	ENSCHOG00000003805	SRBD1	70	67.347	Choloepus_hoffmanni
ENSOMEG00000012229	si:ch211-117n7.8	82	57.701	ENSCPBG00000005677	SRBD1	99	51.717	Chrysemys_picta_bellii
ENSOMEG00000012229	si:ch211-117n7.8	77	40.375	ENSCING00000005950	-	99	40.025	Ciona_intestinalis
ENSOMEG00000012229	si:ch211-117n7.8	77	42.420	ENSCSAVG00000000861	-	99	42.420	Ciona_savignyi
ENSOMEG00000012229	si:ch211-117n7.8	97	49.801	ENSCANG00000016307	SRBD1	83	55.900	Colobus_angolensis_palliatus
ENSOMEG00000012229	si:ch211-117n7.8	93	52.450	ENSCGRG00001000513	Srbd1	96	52.033	Cricetulus_griseus_chok1gshd
ENSOMEG00000012229	si:ch211-117n7.8	93	52.450	ENSCGRG00000002283	Srbd1	96	52.033	Cricetulus_griseus_crigri
ENSOMEG00000012229	si:ch211-117n7.8	98	73.485	ENSCSEG00000000856	si:ch211-117n7.8	98	68.232	Cynoglossus_semilaevis
ENSOMEG00000012229	si:ch211-117n7.8	85	78.833	ENSCVAG00000020212	si:ch211-117n7.8	99	72.222	Cyprinodon_variegatus
ENSOMEG00000012229	si:ch211-117n7.8	82	56.302	ENSDNOG00000018686	SRBD1	83	55.477	Dasypus_novemcinctus
ENSOMEG00000012229	si:ch211-117n7.8	92	55.678	ENSDORG00000010468	Srbd1	96	52.277	Dipodomys_ordii
ENSOMEG00000012229	si:ch211-117n7.8	77	36.157	FBgn0051156	CG31156	79	36.478	Drosophila_melanogaster
ENSOMEG00000012229	si:ch211-117n7.8	81	64.894	ENSETEG00000000739	SRBD1	90	55.839	Echinops_telfairi
ENSOMEG00000012229	si:ch211-117n7.8	71	48.133	ENSEBUG00000008902	si:ch211-117n7.8	95	47.790	Eptatretus_burgeri
ENSOMEG00000012229	si:ch211-117n7.8	93	49.639	ENSEASG00005003132	SRBD1	100	52.469	Equus_asinus_asinus
ENSOMEG00000012229	si:ch211-117n7.8	93	51.393	ENSECAG00000013865	SRBD1	98	48.788	Equus_caballus
ENSOMEG00000012229	si:ch211-117n7.8	99	67.164	ENSELUG00000012592	si:ch211-117n7.8	99	62.392	Esox_lucius
ENSOMEG00000012229	si:ch211-117n7.8	93	51.586	ENSFCAG00000005101	SRBD1	96	51.177	Felis_catus
ENSOMEG00000012229	si:ch211-117n7.8	82	57.587	ENSFALG00000012966	SRBD1	99	52.337	Ficedula_albicollis
ENSOMEG00000012229	si:ch211-117n7.8	93	52.516	ENSFDAG00000016670	SRBD1	97	52.411	Fukomys_damarensis
ENSOMEG00000012229	si:ch211-117n7.8	99	76.894	ENSFHEG00000019480	si:ch211-117n7.8	99	73.772	Fundulus_heteroclitus
ENSOMEG00000012229	si:ch211-117n7.8	93	53.538	ENSGALG00000009990	SRBD1	99	50.862	Gallus_gallus
ENSOMEG00000012229	si:ch211-117n7.8	99	78.409	ENSGAFG00000019664	si:ch211-117n7.8	99	75.271	Gambusia_affinis
ENSOMEG00000012229	si:ch211-117n7.8	61	77.934	ENSGACG00000010794	si:ch211-117n7.8	100	77.934	Gasterosteus_aculeatus
ENSOMEG00000012229	si:ch211-117n7.8	82	58.294	ENSGAGG00000006166	SRBD1	99	58.057	Gopherus_agassizii
ENSOMEG00000012229	si:ch211-117n7.8	83	55.427	ENSGGOG00000005910	SRBD1	88	55.427	Gorilla_gorilla
ENSOMEG00000012229	si:ch211-117n7.8	96	81.061	ENSHBUG00000013207	si:ch211-117n7.8	90	81.061	Haplochromis_burtoni
ENSOMEG00000012229	si:ch211-117n7.8	93	52.351	ENSHGLG00000018153	-	96	52.092	Heterocephalus_glaber_female
ENSOMEG00000012229	si:ch211-117n7.8	93	52.287	ENSHGLG00100015183	-	96	51.929	Heterocephalus_glaber_male
ENSOMEG00000012229	si:ch211-117n7.8	93	66.923	ENSIPUG00000009661	srbd1	100	62.635	Ictalurus_punctatus
ENSOMEG00000012229	si:ch211-117n7.8	81	57.590	ENSSTOG00000005898	SRBD1	96	52.708	Ictidomys_tridecemlineatus
ENSOMEG00000012229	si:ch211-117n7.8	95	55.109	ENSJJAG00000022244	Srbd1	98	49.043	Jaculus_jaculus
ENSOMEG00000012229	si:ch211-117n7.8	99	78.788	ENSKMAG00000003473	si:ch211-117n7.8	99	74.803	Kryptolebias_marmoratus
ENSOMEG00000012229	si:ch211-117n7.8	99	79.924	ENSLBEG00000027518	si:ch211-117n7.8	99	74.586	Labrus_bergylta
ENSOMEG00000012229	si:ch211-117n7.8	82	57.278	ENSLACG00000009790	SRBD1	98	57.278	Latimeria_chalumnae
ENSOMEG00000012229	si:ch211-117n7.8	91	64.925	ENSLOCG00000016360	si:ch211-117n7.8	97	61.284	Lepisosteus_oculatus
ENSOMEG00000012229	si:ch211-117n7.8	83	55.427	ENSMFAG00000042026	SRBD1	86	55.196	Macaca_fascicularis
ENSOMEG00000012229	si:ch211-117n7.8	83	55.427	ENSMMUG00000003490	SRBD1	86	55.196	Macaca_mulatta
ENSOMEG00000012229	si:ch211-117n7.8	83	53.811	ENSMNEG00000034701	SRBD1	85	53.580	Macaca_nemestrina
ENSOMEG00000012229	si:ch211-117n7.8	83	55.543	ENSMLEG00000000745	SRBD1	86	55.312	Mandrillus_leucophaeus
ENSOMEG00000012229	si:ch211-117n7.8	99	78.327	ENSMAMG00000021921	si:ch211-117n7.8	99	73.689	Mastacembelus_armatus
ENSOMEG00000012229	si:ch211-117n7.8	99	81.061	ENSMZEG00005027369	si:ch211-117n7.8	95	81.061	Maylandia_zebra
ENSOMEG00000012229	si:ch211-117n7.8	78	56.343	ENSMGAG00000010273	SRBD1	99	56.095	Meleagris_gallopavo
ENSOMEG00000012229	si:ch211-117n7.8	76	56.683	ENSMAUG00000013916	Srbd1	95	56.312	Mesocricetus_auratus
ENSOMEG00000012229	si:ch211-117n7.8	97	51.102	ENSMICG00000007835	SRBD1	99	50.195	Microcebus_murinus
ENSOMEG00000012229	si:ch211-117n7.8	82	56.921	ENSMOCG00000018716	Srbd1	84	56.563	Microtus_ochrogaster
ENSOMEG00000012229	si:ch211-117n7.8	96	76.515	ENSMMOG00000007507	si:ch211-117n7.8	99	71.486	Mola_mola
ENSOMEG00000012229	si:ch211-117n7.8	99	78.030	ENSMALG00000001562	si:ch211-117n7.8	100	72.303	Monopterus_albus
ENSOMEG00000012229	si:ch211-117n7.8	93	51.782	MGP_CAROLIEiJ_G0021934	Srbd1	99	56.908	Mus_caroli
ENSOMEG00000012229	si:ch211-117n7.8	83	55.634	ENSMUSG00000024135	Srbd1	100	53.873	Mus_musculus
ENSOMEG00000012229	si:ch211-117n7.8	83	55.334	MGP_PahariEiJ_G0020924	Srbd1	85	54.865	Mus_pahari
ENSOMEG00000012229	si:ch211-117n7.8	83	55.516	MGP_SPRETEiJ_G0022850	Srbd1	85	55.399	Mus_spretus
ENSOMEG00000012229	si:ch211-117n7.8	93	52.147	ENSMLUG00000007039	SRBD1	96	51.329	Myotis_lucifugus
ENSOMEG00000012229	si:ch211-117n7.8	92	54.348	ENSNGAG00000011893	Srbd1	96	50.454	Nannospalax_galili
ENSOMEG00000012229	si:ch211-117n7.8	97	78.409	ENSNBRG00000012873	si:ch211-117n7.8	100	72.946	Neolamprologus_brichardi
ENSOMEG00000012229	si:ch211-117n7.8	83	55.312	ENSNLEG00000016877	SRBD1	98	49.461	Nomascus_leucogenys
ENSOMEG00000012229	si:ch211-117n7.8	91	55.351	ENSODEG00000012095	SRBD1	95	51.805	Octodon_degus
ENSOMEG00000012229	si:ch211-117n7.8	99	81.061	ENSONIG00000000945	si:ch211-117n7.8	100	81.228	Oreochromis_niloticus
ENSOMEG00000012229	si:ch211-117n7.8	93	52.008	ENSOCUG00000015385	SRBD1	99	49.705	Oryctolagus_cuniculus
ENSOMEG00000012229	si:ch211-117n7.8	99	85.649	ENSORLG00000004427	si:ch211-117n7.8	99	84.320	Oryzias_latipes
ENSOMEG00000012229	si:ch211-117n7.8	99	89.773	ENSORLG00020012792	si:ch211-117n7.8	99	87.807	Oryzias_latipes_hni
ENSOMEG00000012229	si:ch211-117n7.8	99	89.394	ENSORLG00015018598	si:ch211-117n7.8	99	87.303	Oryzias_latipes_hsok
ENSOMEG00000012229	si:ch211-117n7.8	82	54.363	ENSOGAG00000001076	SRBD1	96	49.896	Otolemur_garnettii
ENSOMEG00000012229	si:ch211-117n7.8	82	53.129	ENSOARG00000005958	SRBD1	84	52.560	Ovis_aries
ENSOMEG00000012229	si:ch211-117n7.8	82	55.976	ENSPPAG00000038442	SRBD1	98	49.461	Pan_paniscus
ENSOMEG00000012229	si:ch211-117n7.8	93	51.689	ENSPPRG00000003449	SRBD1	96	51.537	Panthera_pardus
ENSOMEG00000012229	si:ch211-117n7.8	93	51.791	ENSPTIG00000012495	SRBD1	96	51.639	Panthera_tigris_altaica
ENSOMEG00000012229	si:ch211-117n7.8	82	56.095	ENSPTRG00000011889	SRBD1	98	49.559	Pan_troglodytes
ENSOMEG00000012229	si:ch211-117n7.8	83	55.427	ENSPANG00000008063	SRBD1	86	55.196	Papio_anubis
ENSOMEG00000012229	si:ch211-117n7.8	96	67.300	ENSPKIG00000021973	si:ch211-117n7.8	99	62.109	Paramormyrops_kingsleyae
ENSOMEG00000012229	si:ch211-117n7.8	83	57.326	ENSPSIG00000008992	SRBD1	98	51.539	Pelodiscus_sinensis
ENSOMEG00000012229	si:ch211-117n7.8	97	73.962	ENSPMGG00000013348	si:ch211-117n7.8	99	69.324	Periophthalmus_magnuspinnatus
ENSOMEG00000012229	si:ch211-117n7.8	82	55.000	ENSPEMG00000020684	Srbd1	84	54.482	Peromyscus_maniculatus_bairdii
ENSOMEG00000012229	si:ch211-117n7.8	99	79.545	ENSPFOG00000010650	si:ch211-117n7.8	99	75.593	Poecilia_formosa
ENSOMEG00000012229	si:ch211-117n7.8	99	79.545	ENSPLAG00000002141	si:ch211-117n7.8	99	75.692	Poecilia_latipinna
ENSOMEG00000012229	si:ch211-117n7.8	99	79.545	ENSPMEG00000018537	si:ch211-117n7.8	99	75.468	Poecilia_mexicana
ENSOMEG00000012229	si:ch211-117n7.8	99	76.493	ENSPREG00000003258	si:ch211-117n7.8	99	73.720	Poecilia_reticulata
ENSOMEG00000012229	si:ch211-117n7.8	81	54.255	ENSPPYG00000012444	SRBD1	85	51.188	Pongo_abelii
ENSOMEG00000012229	si:ch211-117n7.8	74	51.387	ENSPCAG00000005629	SRBD1	80	51.123	Procavia_capensis
ENSOMEG00000012229	si:ch211-117n7.8	92	46.505	ENSPCOG00000017669	SRBD1	95	46.237	Propithecus_coquereli
ENSOMEG00000012229	si:ch211-117n7.8	92	51.601	ENSPVAG00000001782	SRBD1	96	45.915	Pteropus_vampyrus
ENSOMEG00000012229	si:ch211-117n7.8	96	81.061	ENSPNYG00000000508	si:ch211-117n7.8	100	71.313	Pundamilia_nyererei
ENSOMEG00000012229	si:ch211-117n7.8	93	67.424	ENSPNAG00000013492	SRBD1	98	64.064	Pygocentrus_nattereri
ENSOMEG00000012229	si:ch211-117n7.8	83	55.464	ENSRNOG00000014720	Srbd1	85	55.229	Rattus_norvegicus
ENSOMEG00000012229	si:ch211-117n7.8	83	55.208	ENSRBIG00000033486	SRBD1	86	54.977	Rhinopithecus_bieti
ENSOMEG00000012229	si:ch211-117n7.8	83	55.208	ENSRROG00000041599	SRBD1	86	54.977	Rhinopithecus_roxellana
ENSOMEG00000012229	si:ch211-117n7.8	83	54.965	ENSSBOG00000024982	SRBD1	86	54.965	Saimiri_boliviensis_boliviensis
ENSOMEG00000012229	si:ch211-117n7.8	84	66.923	ENSSFOG00015001128	si:ch211-117n7.8	95	65.040	Scleropages_formosus
ENSOMEG00000012229	si:ch211-117n7.8	99	75.472	ENSSMAG00000018256	si:ch211-117n7.8	99	72.059	Scophthalmus_maximus
ENSOMEG00000012229	si:ch211-117n7.8	92	76.515	ENSSLDG00000023189	si:ch211-117n7.8	100	73.570	Seriola_lalandi_dorsalis
ENSOMEG00000012229	si:ch211-117n7.8	82	52.081	ENSSARG00000009740	SRBD1	98	46.567	Sorex_araneus
ENSOMEG00000012229	si:ch211-117n7.8	84	58.235	ENSSPUG00000010475	SRBD1	94	57.882	Sphenodon_punctatus
ENSOMEG00000012229	si:ch211-117n7.8	91	80.377	ENSSPAG00000008092	-	90	79.623	Stegastes_partitus
ENSOMEG00000012229	si:ch211-117n7.8	97	50.651	ENSSSCG00000008445	SRBD1	96	50.100	Sus_scrofa
ENSOMEG00000012229	si:ch211-117n7.8	81	57.467	ENSTGUG00000003878	SRBD1	99	56.989	Taeniopygia_guttata
ENSOMEG00000012229	si:ch211-117n7.8	99	72.692	ENSTRUG00000007080	si:ch211-117n7.8	97	74.289	Takifugu_rubripes
ENSOMEG00000012229	si:ch211-117n7.8	97	72.527	ENSTNIG00000007464	si:ch211-117n7.8	98	67.815	Tetraodon_nigroviridis
ENSOMEG00000012229	si:ch211-117n7.8	65	77.660	ENSTBEG00000004556	SRBD1	73	77.660	Tupaia_belangeri
ENSOMEG00000012229	si:ch211-117n7.8	87	51.675	ENSTTRG00000011871	SRBD1	85	58.286	Tursiops_truncatus
ENSOMEG00000012229	si:ch211-117n7.8	91	53.791	ENSUAMG00000008126	SRBD1	97	53.623	Ursus_americanus
ENSOMEG00000012229	si:ch211-117n7.8	92	52.758	ENSUMAG00000012902	SRBD1	93	52.341	Ursus_maritimus
ENSOMEG00000012229	si:ch211-117n7.8	82	55.503	ENSVPAG00000006825	SRBD1	91	55.503	Vicugna_pacos
ENSOMEG00000012229	si:ch211-117n7.8	93	52.004	ENSVVUG00000005389	SRBD1	96	51.646	Vulpes_vulpes
ENSOMEG00000012229	si:ch211-117n7.8	97	52.281	ENSXETG00000002760	srbd1	98	44.828	Xenopus_tropicalis
ENSOMEG00000012229	si:ch211-117n7.8	99	79.167	ENSXMAG00000016861	si:ch211-117n7.8	99	74.877	Xiphophorus_maculatus