EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSOMEG00000012454 (Gene tree)
Gene ID: 112148839
Gene Symbol: lsm1
Alias: -
Full Name: LSM1 homolog%2C mRNA degradation associated
Gene Type: protein_coding
Species: Oryzias_melastigma
Status: putative
Strand: Minus strand
Length: 5767 bases
Position: chrNVQA01000012.1:8804869-8810635
Accession: 112148839
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOMEP00000011167	LSM	PF01423.22	4.6e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOMET00000018163	-	4457	-	ENSOMEP00000011167	133 (aa)	XP_024131981	UPI000CF7BFE2

Gene Model

Click here to download ENSOMEG00000012454's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOMEG00000012454's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOMEG00000012454	lsm1	100	84.211	ENSG00000175324	LSM1	100	84.211	Homo_sapiens
ENSOMEG00000012454	lsm1	100	96.992	ENSAPOG00000010833	lsm1	100	96.992	Acanthochromis_polyacanthus
ENSOMEG00000012454	lsm1	100	84.211	ENSAMEG00000011141	LSM1	100	84.211	Ailuropoda_melanoleuca
ENSOMEG00000012454	lsm1	58	100.000	ENSACIG00000019593	lsm1	64	100.000	Amphilophus_citrinellus
ENSOMEG00000012454	lsm1	100	96.992	ENSAOCG00000017096	lsm1	100	96.992	Amphiprion_ocellaris
ENSOMEG00000012454	lsm1	100	96.992	ENSAOCG00000017997	-	100	96.992	Amphiprion_ocellaris
ENSOMEG00000012454	lsm1	100	96.992	ENSAPEG00000011669	lsm1	100	96.992	Amphiprion_percula
ENSOMEG00000012454	lsm1	100	98.496	ENSATEG00000022266	lsm1	100	98.496	Anabas_testudineus
ENSOMEG00000012454	lsm1	100	84.211	ENSANAG00000027785	LSM1	100	84.211	Aotus_nancymaae
ENSOMEG00000012454	lsm1	100	98.496	ENSACLG00000011400	lsm1	100	98.496	Astatotilapia_calliptera
ENSOMEG00000012454	lsm1	100	83.459	ENSAMXG00000005441	lsm1	100	83.459	Astyanax_mexicanus
ENSOMEG00000012454	lsm1	100	83.459	ENSBTAG00000001612	LSM1	100	83.459	Bos_taurus
ENSOMEG00000012454	lsm1	87	50.000	WBGene00003076	lsm-1	90	50.000	Caenorhabditis_elegans
ENSOMEG00000012454	lsm1	100	83.459	ENSCJAG00000048015	LSM1	100	83.459	Callithrix_jacchus
ENSOMEG00000012454	lsm1	100	84.211	ENSCAFG00000006113	LSM1	100	84.211	Canis_familiaris
ENSOMEG00000012454	lsm1	100	84.211	ENSCAFG00020001822	LSM1	100	84.211	Canis_lupus_dingo
ENSOMEG00000012454	lsm1	100	84.211	ENSCHIG00000013194	LSM1	100	84.211	Capra_hircus
ENSOMEG00000012454	lsm1	100	84.211	ENSTSYG00000010394	LSM1	100	84.211	Carlito_syrichta
ENSOMEG00000012454	lsm1	100	84.211	ENSCPOG00000032671	LSM1	100	84.211	Cavia_porcellus
ENSOMEG00000012454	lsm1	100	84.211	ENSCCAG00000037171	LSM1	100	84.211	Cebus_capucinus
ENSOMEG00000012454	lsm1	100	84.211	ENSCATG00000020377	LSM1	100	84.211	Cercocebus_atys
ENSOMEG00000012454	lsm1	100	82.707	ENSCLAG00000001137	LSM1	100	82.707	Chinchilla_lanigera
ENSOMEG00000012454	lsm1	100	84.211	ENSCSAG00000015485	LSM1	100	84.211	Chlorocebus_sabaeus
ENSOMEG00000012454	lsm1	100	84.962	ENSCHOG00000006030	LSM1	100	84.962	Choloepus_hoffmanni
ENSOMEG00000012454	lsm1	95	79.528	ENSCPBG00000006569	LSM1	86	79.528	Chrysemys_picta_bellii
ENSOMEG00000012454	lsm1	98	62.879	ENSCING00000013536	-	100	62.879	Ciona_intestinalis
ENSOMEG00000012454	lsm1	100	84.211	ENSCANG00000019173	LSM1	100	84.211	Colobus_angolensis_palliatus
ENSOMEG00000012454	lsm1	80	72.072	ENSCGRG00001002259	-	97	72.072	Cricetulus_griseus_chok1gshd
ENSOMEG00000012454	lsm1	100	83.459	ENSCGRG00001024560	-	100	83.459	Cricetulus_griseus_chok1gshd
ENSOMEG00000012454	lsm1	80	72.072	ENSCGRG00000013603	-	97	72.072	Cricetulus_griseus_crigri
ENSOMEG00000012454	lsm1	100	83.459	ENSCGRG00000006554	-	100	83.459	Cricetulus_griseus_crigri
ENSOMEG00000012454	lsm1	100	99.248	ENSCSEG00000010570	lsm1	92	99.248	Cynoglossus_semilaevis
ENSOMEG00000012454	lsm1	100	96.992	ENSCSEG00000008319	lsm1	92	96.992	Cynoglossus_semilaevis
ENSOMEG00000012454	lsm1	100	96.992	ENSCVAG00000003871	lsm1	100	96.992	Cyprinodon_variegatus
ENSOMEG00000012454	lsm1	100	82.707	ENSDARG00000043177	lsm1	100	82.707	Danio_rerio
ENSOMEG00000012454	lsm1	89	66.387	ENSDNOG00000046620	-	100	66.387	Dasypus_novemcinctus
ENSOMEG00000012454	lsm1	100	84.211	ENSDNOG00000046387	-	100	84.211	Dasypus_novemcinctus
ENSOMEG00000012454	lsm1	99	79.545	ENSDNOG00000030989	-	99	79.545	Dasypus_novemcinctus
ENSOMEG00000012454	lsm1	100	83.459	ENSDNOG00000032911	-	100	83.459	Dasypus_novemcinctus
ENSOMEG00000012454	lsm1	100	84.211	ENSDORG00000028172	Lsm1	100	84.211	Dipodomys_ordii
ENSOMEG00000012454	lsm1	93	59.677	FBgn0261067	LSm1	91	59.677	Drosophila_melanogaster
ENSOMEG00000012454	lsm1	100	83.459	ENSEASG00005016677	LSM1	100	83.459	Equus_asinus_asinus
ENSOMEG00000012454	lsm1	100	83.459	ENSECAG00000010461	LSM1	100	83.459	Equus_caballus
ENSOMEG00000012454	lsm1	72	78.125	ENSEEUG00000015181	LSM1	97	78.125	Erinaceus_europaeus
ENSOMEG00000012454	lsm1	100	93.985	ENSELUG00000002322	lsm1	100	93.985	Esox_lucius
ENSOMEG00000012454	lsm1	100	78.195	ENSELUG00000023374	lsm1	100	78.195	Esox_lucius
ENSOMEG00000012454	lsm1	100	84.211	ENSFCAG00000039335	LSM1	100	84.211	Felis_catus
ENSOMEG00000012454	lsm1	89	84.746	ENSFALG00000006723	LSM1	100	84.746	Ficedula_albicollis
ENSOMEG00000012454	lsm1	100	84.211	ENSFDAG00000007658	LSM1	100	84.211	Fukomys_damarensis
ENSOMEG00000012454	lsm1	100	96.992	ENSFHEG00000009556	lsm1	100	96.992	Fundulus_heteroclitus
ENSOMEG00000012454	lsm1	100	96.241	ENSGMOG00000016651	lsm1	98	96.241	Gadus_morhua
ENSOMEG00000012454	lsm1	100	84.211	ENSGALG00000003245	LSM1	100	84.211	Gallus_gallus
ENSOMEG00000012454	lsm1	100	96.992	ENSGAFG00000011355	lsm1	100	96.992	Gambusia_affinis
ENSOMEG00000012454	lsm1	100	96.992	ENSGACG00000011763	lsm1	98	96.992	Gasterosteus_aculeatus
ENSOMEG00000012454	lsm1	100	85.714	ENSGAGG00000024065	LSM1	100	85.714	Gopherus_agassizii
ENSOMEG00000012454	lsm1	100	84.211	ENSGGOG00000022658	LSM1	100	84.211	Gorilla_gorilla
ENSOMEG00000012454	lsm1	100	98.496	ENSHBUG00000010897	lsm1	100	98.496	Haplochromis_burtoni
ENSOMEG00000012454	lsm1	100	69.173	ENSHGLG00000017574	-	100	69.173	Heterocephalus_glaber_female
ENSOMEG00000012454	lsm1	100	84.211	ENSHGLG00000005711	LSM1	100	84.211	Heterocephalus_glaber_female
ENSOMEG00000012454	lsm1	100	84.211	ENSHGLG00100017660	LSM1	100	84.211	Heterocephalus_glaber_male
ENSOMEG00000012454	lsm1	100	69.173	ENSHGLG00100012152	-	100	69.173	Heterocephalus_glaber_male
ENSOMEG00000012454	lsm1	100	96.241	ENSHCOG00000017233	lsm1	100	96.241	Hippocampus_comes
ENSOMEG00000012454	lsm1	100	82.707	ENSIPUG00000002312	LSM1	100	82.707	Ictalurus_punctatus
ENSOMEG00000012454	lsm1	58	92.208	ENSSTOG00000026870	LSM1	94	92.208	Ictidomys_tridecemlineatus
ENSOMEG00000012454	lsm1	100	83.459	ENSJJAG00000014605	-	100	83.459	Jaculus_jaculus
ENSOMEG00000012454	lsm1	100	98.496	ENSKMAG00000003016	lsm1	100	98.496	Kryptolebias_marmoratus
ENSOMEG00000012454	lsm1	100	97.744	ENSLBEG00000022352	lsm1	100	97.744	Labrus_bergylta
ENSOMEG00000012454	lsm1	90	80.833	ENSLACG00000010947	LSM1	99	80.833	Latimeria_chalumnae
ENSOMEG00000012454	lsm1	100	86.466	ENSLOCG00000015149	lsm1	100	86.466	Lepisosteus_oculatus
ENSOMEG00000012454	lsm1	100	84.211	ENSLAFG00000003534	LSM1	100	84.211	Loxodonta_africana
ENSOMEG00000012454	lsm1	100	84.211	ENSMFAG00000032661	LSM1	100	84.211	Macaca_fascicularis
ENSOMEG00000012454	lsm1	100	84.211	ENSMLEG00000034535	LSM1	100	84.211	Mandrillus_leucophaeus
ENSOMEG00000012454	lsm1	100	97.744	ENSMAMG00000007464	lsm1	100	97.744	Mastacembelus_armatus
ENSOMEG00000012454	lsm1	100	98.496	ENSMZEG00005010321	lsm1	100	98.496	Maylandia_zebra
ENSOMEG00000012454	lsm1	100	84.211	ENSMGAG00000002125	LSM1	100	84.211	Meleagris_gallopavo
ENSOMEG00000012454	lsm1	100	84.211	ENSMICG00000030726	LSM1	100	84.211	Microcebus_murinus
ENSOMEG00000012454	lsm1	100	83.459	ENSMOCG00000022817	Lsm1	100	83.459	Microtus_ochrogaster
ENSOMEG00000012454	lsm1	100	96.992	ENSMMOG00000015466	lsm1	100	96.992	Mola_mola
ENSOMEG00000012454	lsm1	100	84.962	ENSMODG00000010732	-	100	84.962	Monodelphis_domestica
ENSOMEG00000012454	lsm1	58	100.000	ENSMALG00000001478	lsm1	82	100.000	Monopterus_albus
ENSOMEG00000012454	lsm1	100	84.211	MGP_CAROLIEiJ_G0030930	Lsm1	100	84.211	Mus_caroli
ENSOMEG00000012454	lsm1	100	84.211	ENSMUSG00000037296	Lsm1	100	84.211	Mus_musculus
ENSOMEG00000012454	lsm1	100	84.211	MGP_PahariEiJ_G0021400	Lsm1	100	84.211	Mus_pahari
ENSOMEG00000012454	lsm1	100	84.211	MGP_SPRETEiJ_G0032049	Lsm1	100	84.211	Mus_spretus
ENSOMEG00000012454	lsm1	100	84.962	ENSMPUG00000009883	LSM1	100	84.962	Mustela_putorius_furo
ENSOMEG00000012454	lsm1	100	84.211	ENSMLUG00000003734	LSM1	100	84.211	Myotis_lucifugus
ENSOMEG00000012454	lsm1	100	83.459	ENSNGAG00000003753	Lsm1	100	83.459	Nannospalax_galili
ENSOMEG00000012454	lsm1	58	100.000	ENSNBRG00000017370	lsm1	66	100.000	Neolamprologus_brichardi
ENSOMEG00000012454	lsm1	100	84.211	ENSNLEG00000029390	LSM1	100	84.211	Nomascus_leucogenys
ENSOMEG00000012454	lsm1	100	84.962	ENSMEUG00000014077	LSM1	100	84.962	Notamacropus_eugenii
ENSOMEG00000012454	lsm1	88	80.342	ENSOPRG00000000333	LSM1	100	80.342	Ochotona_princeps
ENSOMEG00000012454	lsm1	100	84.211	ENSODEG00000004834	LSM1	100	84.211	Octodon_degus
ENSOMEG00000012454	lsm1	100	98.496	ENSONIG00000010782	lsm1	100	98.496	Oreochromis_niloticus
ENSOMEG00000012454	lsm1	100	84.962	ENSOANG00000003256	LSM1	100	84.962	Ornithorhynchus_anatinus
ENSOMEG00000012454	lsm1	100	84.211	ENSOCUG00000015399	LSM1	100	84.211	Oryctolagus_cuniculus
ENSOMEG00000012454	lsm1	100	98.496	ENSORLG00000030288	lsm1	100	98.496	Oryzias_latipes
ENSOMEG00000012454	lsm1	100	96.992	ENSORLG00020006213	-	86	96.992	Oryzias_latipes_hni
ENSOMEG00000012454	lsm1	100	98.496	ENSORLG00020003941	lsm1	100	98.496	Oryzias_latipes_hni
ENSOMEG00000012454	lsm1	100	98.496	ENSORLG00015018350	lsm1	100	98.496	Oryzias_latipes_hsok
ENSOMEG00000012454	lsm1	100	84.211	ENSOGAG00000015161	LSM1	100	84.211	Otolemur_garnettii
ENSOMEG00000012454	lsm1	100	84.211	ENSOARG00000001317	LSM1	100	84.211	Ovis_aries
ENSOMEG00000012454	lsm1	100	84.211	ENSPPAG00000032279	LSM1	100	84.211	Pan_paniscus
ENSOMEG00000012454	lsm1	100	84.211	ENSPPRG00000014172	-	100	84.211	Panthera_pardus
ENSOMEG00000012454	lsm1	100	84.211	ENSPTIG00000010289	LSM1	100	84.211	Panthera_tigris_altaica
ENSOMEG00000012454	lsm1	100	84.211	ENSPTRG00000020169	LSM1	100	84.211	Pan_troglodytes
ENSOMEG00000012454	lsm1	100	84.211	ENSPANG00000008814	LSM1	100	84.211	Papio_anubis
ENSOMEG00000012454	lsm1	100	80.451	ENSPKIG00000019409	LSM1	99	80.451	Paramormyrops_kingsleyae
ENSOMEG00000012454	lsm1	100	87.218	ENSPKIG00000001839	lsm1	100	87.218	Paramormyrops_kingsleyae
ENSOMEG00000012454	lsm1	97	80.620	ENSPSIG00000012563	LSM1	98	80.620	Pelodiscus_sinensis
ENSOMEG00000012454	lsm1	58	100.000	ENSPMGG00000022999	lsm1	73	100.000	Periophthalmus_magnuspinnatus
ENSOMEG00000012454	lsm1	85	72.566	ENSPMAG00000002671	lsm1	100	72.566	Petromyzon_marinus
ENSOMEG00000012454	lsm1	100	84.962	ENSPCIG00000008880	LSM1	100	84.962	Phascolarctos_cinereus
ENSOMEG00000012454	lsm1	100	96.992	ENSPFOG00000016029	lsm1	100	96.992	Poecilia_formosa
ENSOMEG00000012454	lsm1	100	96.992	ENSPLAG00000007879	lsm1	100	96.992	Poecilia_latipinna
ENSOMEG00000012454	lsm1	100	96.992	ENSPMEG00000023550	lsm1	100	96.992	Poecilia_mexicana
ENSOMEG00000012454	lsm1	100	96.992	ENSPREG00000009574	lsm1	100	96.992	Poecilia_reticulata
ENSOMEG00000012454	lsm1	100	84.211	ENSPPYG00000018521	LSM1	100	84.211	Pongo_abelii
ENSOMEG00000012454	lsm1	100	84.211	ENSPCOG00000020901	-	100	84.211	Propithecus_coquereli
ENSOMEG00000012454	lsm1	100	84.211	ENSPVAG00000006016	LSM1	100	84.211	Pteropus_vampyrus
ENSOMEG00000012454	lsm1	100	98.496	ENSPNYG00000018067	lsm1	100	98.496	Pundamilia_nyererei
ENSOMEG00000012454	lsm1	100	82.707	ENSPNAG00000013707	lsm1	100	82.707	Pygocentrus_nattereri
ENSOMEG00000012454	lsm1	100	82.707	ENSRNOG00000015375	Lsm1	100	82.707	Rattus_norvegicus
ENSOMEG00000012454	lsm1	100	84.211	ENSRBIG00000027449	LSM1	100	84.211	Rhinopithecus_bieti
ENSOMEG00000012454	lsm1	100	84.211	ENSRROG00000036074	LSM1	100	84.211	Rhinopithecus_roxellana
ENSOMEG00000012454	lsm1	80	44.248	YJL124C	LSM1	66	44.248	Saccharomyces_cerevisiae
ENSOMEG00000012454	lsm1	100	84.962	ENSSHAG00000017260	LSM1	100	84.962	Sarcophilus_harrisii
ENSOMEG00000012454	lsm1	100	86.466	ENSSFOG00015019528	lsm1	100	86.466	Scleropages_formosus
ENSOMEG00000012454	lsm1	100	98.496	ENSSMAG00000004930	lsm1	100	98.496	Scophthalmus_maximus
ENSOMEG00000012454	lsm1	100	98.496	ENSSDUG00000021823	lsm1	100	98.496	Seriola_dumerili
ENSOMEG00000012454	lsm1	100	98.496	ENSSLDG00000012154	lsm1	100	98.496	Seriola_lalandi_dorsalis
ENSOMEG00000012454	lsm1	100	85.714	ENSSPUG00000014878	LSM1	100	85.714	Sphenodon_punctatus
ENSOMEG00000012454	lsm1	100	97.744	ENSSPAG00000020548	lsm1	100	97.744	Stegastes_partitus
ENSOMEG00000012454	lsm1	100	84.211	ENSSSCG00000039058	LSM1	100	84.211	Sus_scrofa
ENSOMEG00000012454	lsm1	100	86.466	ENSTGUG00000004793	LSM1	100	86.466	Taeniopygia_guttata
ENSOMEG00000012454	lsm1	100	95.489	ENSTRUG00000025239	lsm1	100	95.489	Takifugu_rubripes
ENSOMEG00000012454	lsm1	100	93.233	ENSTNIG00000004055	lsm1	100	93.233	Tetraodon_nigroviridis
ENSOMEG00000012454	lsm1	88	82.051	ENSTBEG00000015884	LSM1	100	82.051	Tupaia_belangeri
ENSOMEG00000012454	lsm1	100	84.211	ENSTTRG00000004482	LSM1	100	84.211	Tursiops_truncatus
ENSOMEG00000012454	lsm1	100	84.211	ENSUAMG00000004103	LSM1	100	84.211	Ursus_americanus
ENSOMEG00000012454	lsm1	100	84.211	ENSUMAG00000009132	LSM1	100	84.211	Ursus_maritimus
ENSOMEG00000012454	lsm1	58	90.909	ENSVPAG00000011593	LSM1	100	90.909	Vicugna_pacos
ENSOMEG00000012454	lsm1	61	65.432	ENSVVUG00000014880	-	86	65.432	Vulpes_vulpes
ENSOMEG00000012454	lsm1	100	84.211	ENSVVUG00000020191	LSM1	100	84.211	Vulpes_vulpes
ENSOMEG00000012454	lsm1	100	80.292	ENSXETG00000009004	lsm1	100	80.292	Xenopus_tropicalis
ENSOMEG00000012454	lsm1	100	96.992	ENSXCOG00000015631	lsm1	100	96.992	Xiphophorus_couchianus
ENSOMEG00000012454	lsm1	100	96.992	ENSXMAG00000026637	lsm1	100	96.992	Xiphophorus_maculatus