EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSOMEG00000012555 (Gene tree)
Gene ID: 112154971
Gene Symbol: cmss1
Alias: -
Full Name: cms1 ribosomal small subunit homolog
Gene Type: protein_coding
Species: Oryzias_melastigma
Status: putative
Strand: Minus strand
Length: 25196 bases
Position: chrNVQA01000019.1:21707827-21733022
Accession: 112154971
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOMEP00000029102	CMS1	PF14617.6	2.4e-36	1	1
ENSOMEP00000011249	CMS1	PF14617.6	4.2e-35	1	1
ENSOMEP00000029102	DEAD	PF00270.29	2.1e-08	1	1
ENSOMEP00000011249	DEAD	PF00270.29	2.3e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOMET00000018271	-	2037	-	ENSOMEP00000029102	291 (aa)	-	-
ENSOMET00000032237	-	2610	-	ENSOMEP00000011249	289 (aa)	XP_024142040	UPI000CF83480

Gene Model

Click here to download ENSOMEG00000012555's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOMEG00000012555's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOMEG00000012555	cmss1	100	54.325	ENSG00000184220	CMSS1	98	65.000	Homo_sapiens
ENSOMEG00000012555	cmss1	70	84.729	ENSAPOG00000010604	cmss1	96	73.359	Acanthochromis_polyacanthus
ENSOMEG00000012555	cmss1	85	58.130	ENSAMEG00000004092	CMSS1	78	64.039	Ailuropoda_melanoleuca
ENSOMEG00000012555	cmss1	90	66.920	ENSACIG00000021854	cmss1	98	66.923	Amphilophus_citrinellus
ENSOMEG00000012555	cmss1	100	72.852	ENSAOCG00000013361	cmss1	100	74.227	Amphiprion_ocellaris
ENSOMEG00000012555	cmss1	100	73.540	ENSAPEG00000005829	cmss1	100	73.883	Amphiprion_percula
ENSOMEG00000012555	cmss1	100	67.698	ENSATEG00000008209	cmss1	100	68.259	Anabas_testudineus
ENSOMEG00000012555	cmss1	70	62.376	ENSAPLG00000010542	CMSS1	97	59.821	Anas_platyrhynchos
ENSOMEG00000012555	cmss1	86	58.964	ENSACAG00000011065	CMSS1	74	64.851	Anolis_carolinensis
ENSOMEG00000012555	cmss1	100	53.633	ENSANAG00000023565	CMSS1	100	52.881	Aotus_nancymaae
ENSOMEG00000012555	cmss1	100	72.852	ENSACLG00000027294	cmss1	100	73.196	Astatotilapia_calliptera
ENSOMEG00000012555	cmss1	100	58.784	ENSAMXG00000002046	cmss1	100	59.184	Astyanax_mexicanus
ENSOMEG00000012555	cmss1	100	55.017	ENSBTAG00000013663	CMSS1	100	53.979	Bos_taurus
ENSOMEG00000012555	cmss1	100	53.979	ENSCJAG00000000610	CMSS1	100	52.542	Callithrix_jacchus
ENSOMEG00000012555	cmss1	70	64.851	ENSCAFG00000009230	CMSS1	73	64.851	Canis_familiaris
ENSOMEG00000012555	cmss1	70	62.376	ENSCAFG00020024156	-	63	62.376	Canis_lupus_dingo
ENSOMEG00000012555	cmss1	97	52.669	ENSCAFG00020009464	-	74	64.851	Canis_lupus_dingo
ENSOMEG00000012555	cmss1	88	57.874	ENSCHIG00000013003	CMSS1	82	60.965	Capra_hircus
ENSOMEG00000012555	cmss1	95	55.636	ENSTSYG00000009266	CMSS1	90	60.426	Carlito_syrichta
ENSOMEG00000012555	cmss1	78	50.893	ENSCAPG00000013584	CMSS1	88	56.085	Cavia_aperea
ENSOMEG00000012555	cmss1	100	54.639	ENSCPOG00000014680	CMSS1	100	54.138	Cavia_porcellus
ENSOMEG00000012555	cmss1	100	54.325	ENSCCAG00000034685	CMSS1	100	52.881	Cebus_capucinus
ENSOMEG00000012555	cmss1	100	54.325	ENSCATG00000031980	CMSS1	100	54.138	Cercocebus_atys
ENSOMEG00000012555	cmss1	69	63.500	ENSCLAG00000011241	CMSS1	99	59.914	Chinchilla_lanigera
ENSOMEG00000012555	cmss1	70	64.851	ENSCSAG00000006024	CMSS1	82	64.851	Chlorocebus_sabaeus
ENSOMEG00000012555	cmss1	100	41.356	ENSCHOG00000012098	CMSS1	100	41.924	Choloepus_hoffmanni
ENSOMEG00000012555	cmss1	65	46.073	ENSCING00000014848	-	99	45.989	Ciona_intestinalis
ENSOMEG00000012555	cmss1	100	54.325	ENSCANG00000031337	CMSS1	100	54.138	Colobus_angolensis_palliatus
ENSOMEG00000012555	cmss1	100	54.452	ENSCGRG00001014305	Cmss1	100	53.767	Cricetulus_griseus_chok1gshd
ENSOMEG00000012555	cmss1	80	60.000	ENSCGRG00000006722	Cmss1	91	60.000	Cricetulus_griseus_crigri
ENSOMEG00000012555	cmss1	100	68.475	ENSCSEG00000004958	cmss1	100	69.831	Cynoglossus_semilaevis
ENSOMEG00000012555	cmss1	100	73.288	ENSCVAG00000005039	cmss1	100	73.630	Cyprinodon_variegatus
ENSOMEG00000012555	cmss1	100	57.770	ENSDARG00000112579	cmss1	100	60.544	Danio_rerio
ENSOMEG00000012555	cmss1	84	59.016	ENSDNOG00000040418	CMSS1	73	63.366	Dasypus_novemcinctus
ENSOMEG00000012555	cmss1	100	54.671	ENSDORG00000010461	Cmss1	100	54.483	Dipodomys_ordii
ENSOMEG00000012555	cmss1	80	60.606	ENSEASG00005010966	CMSS1	92	63.366	Equus_asinus_asinus
ENSOMEG00000012555	cmss1	69	62.500	ENSECAG00000015662	CMSS1	89	62.871	Equus_caballus
ENSOMEG00000012555	cmss1	69	44.500	ENSEEUG00000007624	-	100	37.716	Erinaceus_europaeus
ENSOMEG00000012555	cmss1	100	60.667	ENSELUG00000019459	cmss1	100	61.000	Esox_lucius
ENSOMEG00000012555	cmss1	100	55.363	ENSFCAG00000044577	CMSS1	100	54.671	Felis_catus
ENSOMEG00000012555	cmss1	70	61.386	ENSFALG00000005816	CMSS1	85	61.386	Ficedula_albicollis
ENSOMEG00000012555	cmss1	70	64.851	ENSFDAG00000012577	CMSS1	89	64.851	Fukomys_damarensis
ENSOMEG00000012555	cmss1	79	78.879	ENSFHEG00000012008	cmss1	95	78.448	Fundulus_heteroclitus
ENSOMEG00000012555	cmss1	99	64.336	ENSGMOG00000016729	cmss1	100	60.976	Gadus_morhua
ENSOMEG00000012555	cmss1	70	63.366	ENSGALG00000015267	CMSS1	77	63.366	Gallus_gallus
ENSOMEG00000012555	cmss1	92	74.157	ENSGAFG00000021217	cmss1	98	74.046	Gambusia_affinis
ENSOMEG00000012555	cmss1	99	66.899	ENSGACG00000002798	cmss1	100	69.930	Gasterosteus_aculeatus
ENSOMEG00000012555	cmss1	94	53.791	ENSGAGG00000019861	CMSS1	79	63.861	Gopherus_agassizii
ENSOMEG00000012555	cmss1	82	60.338	ENSGGOG00000014125	CMSS1	77	64.356	Gorilla_gorilla
ENSOMEG00000012555	cmss1	100	72.509	ENSHBUG00000008431	cmss1	100	72.852	Haplochromis_burtoni
ENSOMEG00000012555	cmss1	69	64.500	ENSHGLG00000019481	CMSS1	82	64.851	Heterocephalus_glaber_female
ENSOMEG00000012555	cmss1	69	64.500	ENSHGLG00100010314	CMSS1	81	64.851	Heterocephalus_glaber_male
ENSOMEG00000012555	cmss1	100	66.780	ENSHCOG00000003222	cmss1	100	66.780	Hippocampus_comes
ENSOMEG00000012555	cmss1	100	60.616	ENSIPUG00000011591	cmss1	100	59.932	Ictalurus_punctatus
ENSOMEG00000012555	cmss1	100	53.584	ENSSTOG00000019366	CMSS1	100	53.242	Ictidomys_tridecemlineatus
ENSOMEG00000012555	cmss1	100	53.425	ENSJJAG00000014894	Cmss1	90	63.366	Jaculus_jaculus
ENSOMEG00000012555	cmss1	92	63.158	ENSKMAG00000002390	cmss1	96	63.281	Kryptolebias_marmoratus
ENSOMEG00000012555	cmss1	70	76.961	ENSLBEG00000006298	cmss1	98	65.000	Labrus_bergylta
ENSOMEG00000012555	cmss1	70	64.356	ENSLACG00000009293	CMSS1	88	64.356	Latimeria_chalumnae
ENSOMEG00000012555	cmss1	100	56.552	ENSLOCG00000009391	cmss1	100	56.897	Lepisosteus_oculatus
ENSOMEG00000012555	cmss1	69	63.500	ENSLAFG00000017509	CMSS1	89	63.861	Loxodonta_africana
ENSOMEG00000012555	cmss1	100	53.979	ENSMFAG00000045006	CMSS1	100	53.793	Macaca_fascicularis
ENSOMEG00000012555	cmss1	100	53.633	ENSMMUG00000002939	CMSS1	100	53.448	Macaca_mulatta
ENSOMEG00000012555	cmss1	100	53.979	ENSMNEG00000031315	CMSS1	100	53.793	Macaca_nemestrina
ENSOMEG00000012555	cmss1	100	53.979	ENSMLEG00000033660	CMSS1	100	53.793	Mandrillus_leucophaeus
ENSOMEG00000012555	cmss1	100	74.570	ENSMAMG00000017176	cmss1	100	74.227	Mastacembelus_armatus
ENSOMEG00000012555	cmss1	100	72.852	ENSMZEG00005021886	cmss1	100	73.196	Maylandia_zebra
ENSOMEG00000012555	cmss1	70	63.366	ENSMGAG00000014360	CMSS1	89	63.366	Meleagris_gallopavo
ENSOMEG00000012555	cmss1	100	39.726	ENSMAUG00000020609	Cmss1	100	39.384	Mesocricetus_auratus
ENSOMEG00000012555	cmss1	100	55.363	ENSMICG00000048977	CMSS1	100	52.189	Microcebus_murinus
ENSOMEG00000012555	cmss1	100	52.560	ENSMOCG00000021937	Cmss1	100	50.519	Microtus_ochrogaster
ENSOMEG00000012555	cmss1	87	69.960	ENSMMOG00000019794	cmss1	97	70.751	Mola_mola
ENSOMEG00000012555	cmss1	81	60.256	ENSMODG00000002275	CMSS1	86	61.842	Monodelphis_domestica
ENSOMEG00000012555	cmss1	100	72.260	ENSMALG00000004250	cmss1	100	71.918	Monopterus_albus
ENSOMEG00000012555	cmss1	100	55.017	MGP_CAROLIEiJ_G0020824	Cmss1	100	54.325	Mus_caroli
ENSOMEG00000012555	cmss1	100	54.671	ENSMUSG00000022748	Cmss1	100	53.979	Mus_musculus
ENSOMEG00000012555	cmss1	100	55.017	MGP_PahariEiJ_G0016524	Cmss1	100	53.979	Mus_pahari
ENSOMEG00000012555	cmss1	100	53.979	MGP_SPRETEiJ_G0021724	Cmss1	100	53.287	Mus_spretus
ENSOMEG00000012555	cmss1	81	60.944	ENSMPUG00000011324	CMSS1	78	64.179	Mustela_putorius_furo
ENSOMEG00000012555	cmss1	82	58.996	ENSMLUG00000001131	CMSS1	78	62.745	Myotis_lucifugus
ENSOMEG00000012555	cmss1	100	53.979	ENSNGAG00000020316	Cmss1	100	52.881	Nannospalax_galili
ENSOMEG00000012555	cmss1	100	73.196	ENSNBRG00000003095	cmss1	100	73.540	Neolamprologus_brichardi
ENSOMEG00000012555	cmss1	100	54.671	ENSNLEG00000034172	CMSS1	100	54.138	Nomascus_leucogenys
ENSOMEG00000012555	cmss1	79	53.947	ENSMEUG00000014505	CMSS1	89	55.941	Notamacropus_eugenii
ENSOMEG00000012555	cmss1	100	53.952	ENSOPRG00000002986	CMSS1	100	53.448	Ochotona_princeps
ENSOMEG00000012555	cmss1	100	44.983	ENSODEG00000009446	-	100	44.983	Octodon_degus
ENSOMEG00000012555	cmss1	100	55.326	ENSODEG00000005226	-	100	54.138	Octodon_degus
ENSOMEG00000012555	cmss1	100	48.797	ENSODEG00000001853	-	100	48.966	Octodon_degus
ENSOMEG00000012555	cmss1	100	53.979	ENSODEG00000003558	-	100	51.557	Octodon_degus
ENSOMEG00000012555	cmss1	90	74.330	ENSONIG00000006678	cmss1	100	74.713	Oreochromis_niloticus
ENSOMEG00000012555	cmss1	79	60.526	ENSOANG00000007529	CMSS1	87	63.366	Ornithorhynchus_anatinus
ENSOMEG00000012555	cmss1	81	60.684	ENSOCUG00000025366	CMSS1	73	64.356	Oryctolagus_cuniculus
ENSOMEG00000012555	cmss1	100	87.889	ENSORLG00000020340	cmss1	100	88.235	Oryzias_latipes
ENSOMEG00000012555	cmss1	90	72.587	ENSORLG00020012235	cmss1	97	71.429	Oryzias_latipes_hni
ENSOMEG00000012555	cmss1	91	76.866	ENSORLG00015015551	cmss1	99	76.981	Oryzias_latipes_hsok
ENSOMEG00000012555	cmss1	70	64.851	ENSOGAG00000002045	CMSS1	89	64.851	Otolemur_garnettii
ENSOMEG00000012555	cmss1	88	57.647	ENSOARG00000017899	CMSS1	78	60.699	Ovis_aries
ENSOMEG00000012555	cmss1	82	60.338	ENSPPAG00000038515	CMSS1	74	64.356	Pan_paniscus
ENSOMEG00000012555	cmss1	100	55.363	ENSPPRG00000016767	CMSS1	100	54.671	Panthera_pardus
ENSOMEG00000012555	cmss1	100	55.670	ENSPTIG00000018274	CMSS1	100	54.828	Panthera_tigris_altaica
ENSOMEG00000012555	cmss1	100	54.671	ENSPTRG00000015157	CMSS1	100	53.448	Pan_troglodytes
ENSOMEG00000012555	cmss1	83	60.000	ENSPANG00000019980	CMSS1	80	64.851	Papio_anubis
ENSOMEG00000012555	cmss1	97	60.211	ENSPKIG00000012609	cmss1	97	60.674	Paramormyrops_kingsleyae
ENSOMEG00000012555	cmss1	70	65.347	ENSPSIG00000003849	CMSS1	88	65.347	Pelodiscus_sinensis
ENSOMEG00000012555	cmss1	70	77.941	ENSPMGG00000010286	cmss1	88	77.941	Periophthalmus_magnuspinnatus
ENSOMEG00000012555	cmss1	100	56.055	ENSPEMG00000016384	Cmss1	100	55.363	Peromyscus_maniculatus_bairdii
ENSOMEG00000012555	cmss1	71	51.961	ENSPMAG00000001146	cmss1	99	52.217	Petromyzon_marinus
ENSOMEG00000012555	cmss1	95	54.909	ENSPCIG00000015656	CMSS1	77	65.842	Phascolarctos_cinereus
ENSOMEG00000012555	cmss1	100	74.658	ENSPFOG00000016849	cmss1	100	72.945	Poecilia_formosa
ENSOMEG00000012555	cmss1	100	74.315	ENSPLAG00000008323	cmss1	100	72.603	Poecilia_latipinna
ENSOMEG00000012555	cmss1	100	75.342	ENSPMEG00000021020	cmss1	100	74.658	Poecilia_mexicana
ENSOMEG00000012555	cmss1	89	75.862	ENSPREG00000007618	cmss1	89	74.905	Poecilia_reticulata
ENSOMEG00000012555	cmss1	100	53.633	ENSPPYG00000013606	CMSS1	100	52.759	Pongo_abelii
ENSOMEG00000012555	cmss1	100	55.363	ENSPCOG00000020035	CMSS1	100	54.608	Propithecus_coquereli
ENSOMEG00000012555	cmss1	100	47.751	ENSPVAG00000017031	CMSS1	100	47.059	Pteropus_vampyrus
ENSOMEG00000012555	cmss1	91	72.830	ENSPNYG00000013428	cmss1	97	73.208	Pundamilia_nyererei
ENSOMEG00000012555	cmss1	100	60.000	ENSPNAG00000007912	cmss1	100	58.054	Pygocentrus_nattereri
ENSOMEG00000012555	cmss1	88	57.087	ENSRNOG00000027888	Cmss1	88	60.444	Rattus_norvegicus
ENSOMEG00000012555	cmss1	100	54.138	ENSRBIG00000037931	CMSS1	100	53.793	Rhinopithecus_bieti
ENSOMEG00000012555	cmss1	100	54.138	ENSRROG00000042910	CMSS1	100	53.793	Rhinopithecus_roxellana
ENSOMEG00000012555	cmss1	70	64.356	ENSSBOG00000030980	CMSS1	77	64.356	Saimiri_boliviensis_boliviensis
ENSOMEG00000012555	cmss1	70	65.842	ENSSHAG00000009321	CMSS1	80	65.842	Sarcophilus_harrisii
ENSOMEG00000012555	cmss1	100	62.329	ENSSFOG00015001509	cmss1	100	62.799	Scleropages_formosus
ENSOMEG00000012555	cmss1	100	70.890	ENSSMAG00000001653	cmss1	100	71.088	Scophthalmus_maximus
ENSOMEG00000012555	cmss1	100	75.085	ENSSDUG00000007719	cmss1	100	75.427	Seriola_dumerili
ENSOMEG00000012555	cmss1	90	72.694	ENSSLDG00000012300	cmss1	91	72.694	Seriola_lalandi_dorsalis
ENSOMEG00000012555	cmss1	100	45.329	ENSSARG00000003584	CMSS1	100	43.729	Sorex_araneus
ENSOMEG00000012555	cmss1	70	62.376	ENSSPUG00000003865	CMSS1	89	62.376	Sphenodon_punctatus
ENSOMEG00000012555	cmss1	95	71.119	ENSSPAG00000019182	cmss1	84	70.758	Stegastes_partitus
ENSOMEG00000012555	cmss1	100	53.979	ENSSSCG00000011970	CMSS1	100	53.793	Sus_scrofa
ENSOMEG00000012555	cmss1	70	61.881	ENSTGUG00000013635	CMSS1	88	61.881	Taeniopygia_guttata
ENSOMEG00000012555	cmss1	100	67.586	ENSTRUG00000015265	cmss1	100	67.010	Takifugu_rubripes
ENSOMEG00000012555	cmss1	95	63.043	ENSTNIG00000002880	cmss1	74	72.414	Tetraodon_nigroviridis
ENSOMEG00000012555	cmss1	100	39.446	ENSTBEG00000016722	CMSS1	100	36.678	Tupaia_belangeri
ENSOMEG00000012555	cmss1	100	53.287	ENSTTRG00000001562	CMSS1	100	52.069	Tursiops_truncatus
ENSOMEG00000012555	cmss1	80	61.739	ENSUAMG00000024209	CMSS1	95	62.174	Ursus_americanus
ENSOMEG00000012555	cmss1	81	60.256	ENSUMAG00000001983	CMSS1	78	64.356	Ursus_maritimus
ENSOMEG00000012555	cmss1	55	64.375	ENSVPAG00000000263	CMSS1	57	64.375	Vicugna_pacos
ENSOMEG00000012555	cmss1	69	64.500	ENSVVUG00000021647	-	82	64.851	Vulpes_vulpes
ENSOMEG00000012555	cmss1	70	63.861	ENSVVUG00000007776	-	80	63.861	Vulpes_vulpes
ENSOMEG00000012555	cmss1	100	53.633	ENSXETG00000011858	cmss1	100	51.203	Xenopus_tropicalis
ENSOMEG00000012555	cmss1	92	72.963	ENSXCOG00000018724	cmss1	90	73.384	Xiphophorus_couchianus
ENSOMEG00000012555	cmss1	91	73.308	ENSXMAG00000011243	cmss1	99	73.384	Xiphophorus_maculatus