EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSOMEG00000012806 (Gene tree)
Gene ID: 112150486
Gene Symbol: lsm7
Alias: -
Full Name: LSM7 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Oryzias_melastigma
Status: putative
Strand: Plus strand
Length: 6369 bases
Position: chrNVQA01000014.1:15647269-15653637
Accession: 112150486
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOMEP00000011479	LSM	PF01423.22	1.1e-20	1	1
ENSOMEP00000029274	LSM	PF01423.22	1.4e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOMET00000018593	-	2987	-	ENSOMEP00000011479	103 (aa)	XP_024134623	UPI0002A4B1A0
ENSOMET00000018575	-	342	-	ENSOMEP00000029274	113 (aa)	-	-

Gene Model

Click here to download ENSOMEG00000012806's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOMEG00000012806's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSOMEG00000012806	lsm7	69	38.028	ENSOMEG00000010583	snrpg	83	38.028

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOMEG00000012806	lsm7	100	95.146	ENSG00000130332	LSM7	100	95.918	Homo_sapiens
ENSOMEG00000012806	lsm7	91	100.000	ENSAPOG00000015573	lsm7	81	100.000	Acanthochromis_polyacanthus
ENSOMEG00000012806	lsm7	100	92.233	ENSAMEG00000005484	LSM7	100	92.233	Ailuropoda_melanoleuca
ENSOMEG00000012806	lsm7	95	98.980	ENSACIG00000006498	lsm7	78	98.980	Amphilophus_citrinellus
ENSOMEG00000012806	lsm7	99	99.020	ENSAOCG00000001077	lsm7	92	100.000	Amphiprion_ocellaris
ENSOMEG00000012806	lsm7	100	100.000	ENSAPEG00000000694	lsm7	100	100.000	Amphiprion_percula
ENSOMEG00000012806	lsm7	100	98.058	ENSAPEG00000024447	lsm7	92	100.000	Amphiprion_percula
ENSOMEG00000012806	lsm7	100	100.000	ENSATEG00000008557	lsm7	100	100.000	Anabas_testudineus
ENSOMEG00000012806	lsm7	100	95.146	ENSANAG00000037196	-	100	95.146	Aotus_nancymaae
ENSOMEG00000012806	lsm7	100	86.408	ENSANAG00000022222	-	100	86.408	Aotus_nancymaae
ENSOMEG00000012806	lsm7	100	99.029	ENSACLG00000021021	lsm7	100	99.029	Astatotilapia_calliptera
ENSOMEG00000012806	lsm7	100	98.058	ENSAMXG00000037622	lsm7	100	98.058	Astyanax_mexicanus
ENSOMEG00000012806	lsm7	100	95.146	ENSBTAG00000004521	LSM7	100	95.146	Bos_taurus
ENSOMEG00000012806	lsm7	97	58.000	WBGene00003081	lsm-7	98	57.843	Caenorhabditis_elegans
ENSOMEG00000012806	lsm7	69	77.465	ENSCJAG00000039713	-	87	77.465	Callithrix_jacchus
ENSOMEG00000012806	lsm7	98	94.059	ENSCAFG00000019409	LSM7	99	93.137	Canis_familiaris
ENSOMEG00000012806	lsm7	98	94.059	ENSCAFG00020018168	LSM7	76	93.204	Canis_lupus_dingo
ENSOMEG00000012806	lsm7	100	93.204	ENSCHIG00000023663	LSM7	100	93.204	Capra_hircus
ENSOMEG00000012806	lsm7	69	95.775	ENSCAPG00000014534	LSM7	100	95.775	Cavia_aperea
ENSOMEG00000012806	lsm7	100	95.146	ENSCPOG00000014025	LSM7	100	95.146	Cavia_porcellus
ENSOMEG00000012806	lsm7	98	95.050	ENSCCAG00000035456	LSM7	99	95.050	Cebus_capucinus
ENSOMEG00000012806	lsm7	100	95.146	ENSCATG00000023543	LSM7	100	95.146	Cercocebus_atys
ENSOMEG00000012806	lsm7	100	95.146	ENSCLAG00000011635	LSM7	100	95.146	Chinchilla_lanigera
ENSOMEG00000012806	lsm7	100	95.146	ENSCSAG00000011599	LSM7	100	95.146	Chlorocebus_sabaeus
ENSOMEG00000012806	lsm7	70	95.833	ENSCPBG00000021317	LSM7	77	95.833	Chrysemys_picta_bellii
ENSOMEG00000012806	lsm7	93	80.208	ENSCING00000022134	-	97	80.208	Ciona_intestinalis
ENSOMEG00000012806	lsm7	100	95.146	ENSCANG00000035525	LSM7	100	95.146	Colobus_angolensis_palliatus
ENSOMEG00000012806	lsm7	100	94.175	ENSCGRG00001000807	-	100	94.175	Cricetulus_griseus_chok1gshd
ENSOMEG00000012806	lsm7	87	84.444	ENSCGRG00001016005	-	92	84.444	Cricetulus_griseus_chok1gshd
ENSOMEG00000012806	lsm7	98	94.059	ENSCGRG00000014355	-	99	92.233	Cricetulus_griseus_crigri
ENSOMEG00000012806	lsm7	87	84.444	ENSCGRG00000006821	-	92	84.444	Cricetulus_griseus_crigri
ENSOMEG00000012806	lsm7	98	100.000	ENSCSEG00000014900	lsm7	86	100.000	Cynoglossus_semilaevis
ENSOMEG00000012806	lsm7	98	99.010	ENSCVAG00000021091	lsm7	95	98.058	Cyprinodon_variegatus
ENSOMEG00000012806	lsm7	100	97.087	ENSDARG00000058328	lsm7	100	97.087	Danio_rerio
ENSOMEG00000012806	lsm7	99	93.137	ENSDORG00000024460	Lsm7	100	93.137	Dipodomys_ordii
ENSOMEG00000012806	lsm7	94	73.469	FBgn0261068	LSm7	89	73.469	Drosophila_melanogaster
ENSOMEG00000012806	lsm7	98	92.079	ENSETEG00000012788	LSM7	100	91.176	Echinops_telfairi
ENSOMEG00000012806	lsm7	100	83.495	ENSEBUG00000016992	lsm7	99	83.495	Eptatretus_burgeri
ENSOMEG00000012806	lsm7	81	59.036	ENSEBUG00000010470	-	79	59.036	Eptatretus_burgeri
ENSOMEG00000012806	lsm7	100	91.262	ENSECAG00000001440	LSM7	66	91.262	Equus_caballus
ENSOMEG00000012806	lsm7	100	94.175	ENSFCAG00000003445	LSM7	100	94.175	Felis_catus
ENSOMEG00000012806	lsm7	98	97.030	ENSFALG00000011912	LSM7	100	97.030	Ficedula_albicollis
ENSOMEG00000012806	lsm7	93	94.792	ENSFDAG00000007661	LSM7	100	94.792	Fukomys_damarensis
ENSOMEG00000012806	lsm7	98	99.010	ENSFHEG00000006349	lsm7	92	98.058	Fundulus_heteroclitus
ENSOMEG00000012806	lsm7	100	96.117	ENSGMOG00000013320	lsm7	100	96.117	Gadus_morhua
ENSOMEG00000012806	lsm7	100	99.029	ENSGAFG00000013902	lsm7	100	99.029	Gambusia_affinis
ENSOMEG00000012806	lsm7	100	97.087	ENSGACG00000010390	lsm7	100	97.087	Gasterosteus_aculeatus
ENSOMEG00000012806	lsm7	100	95.146	ENSGGOG00000010172	LSM7	100	95.146	Gorilla_gorilla
ENSOMEG00000012806	lsm7	100	99.029	ENSHBUG00000004616	lsm7	100	99.029	Haplochromis_burtoni
ENSOMEG00000012806	lsm7	100	95.146	ENSHGLG00000010587	LSM7	100	95.146	Heterocephalus_glaber_female
ENSOMEG00000012806	lsm7	100	95.146	ENSHGLG00100000852	LSM7	100	95.146	Heterocephalus_glaber_male
ENSOMEG00000012806	lsm7	98	99.010	ENSHCOG00000020252	lsm7	100	99.010	Hippocampus_comes
ENSOMEG00000012806	lsm7	100	96.117	ENSIPUG00000024724	lsm7	100	96.117	Ictalurus_punctatus
ENSOMEG00000012806	lsm7	98	95.050	ENSSTOG00000028372	LSM7	99	95.050	Ictidomys_tridecemlineatus
ENSOMEG00000012806	lsm7	97	95.000	ENSJJAG00000001936	Lsm7	97	95.000	Jaculus_jaculus
ENSOMEG00000012806	lsm7	100	99.029	ENSKMAG00000022151	lsm7	100	99.029	Kryptolebias_marmoratus
ENSOMEG00000012806	lsm7	100	99.029	ENSLBEG00000005203	lsm7	100	99.029	Labrus_bergylta
ENSOMEG00000012806	lsm7	90	95.699	ENSLACG00000015700	LSM7	100	94.175	Latimeria_chalumnae
ENSOMEG00000012806	lsm7	98	97.030	ENSLOCG00000004356	lsm7	99	96.078	Lepisosteus_oculatus
ENSOMEG00000012806	lsm7	98	95.050	ENSLAFG00000029302	LSM7	100	94.175	Loxodonta_africana
ENSOMEG00000012806	lsm7	100	95.146	ENSMFAG00000044572	LSM7	100	95.146	Macaca_fascicularis
ENSOMEG00000012806	lsm7	100	95.146	ENSMMUG00000000452	LSM7	100	95.146	Macaca_mulatta
ENSOMEG00000012806	lsm7	100	95.146	ENSMNEG00000004393	LSM7	100	95.146	Macaca_nemestrina
ENSOMEG00000012806	lsm7	100	95.146	ENSMLEG00000030852	LSM7	100	95.146	Mandrillus_leucophaeus
ENSOMEG00000012806	lsm7	100	99.029	ENSMAMG00000005410	lsm7	100	99.029	Mastacembelus_armatus
ENSOMEG00000012806	lsm7	100	99.029	ENSMZEG00005028055	lsm7	100	99.029	Maylandia_zebra
ENSOMEG00000012806	lsm7	100	97.087	ENSMGAG00000000750	LSM7	89	97.087	Meleagris_gallopavo
ENSOMEG00000012806	lsm7	100	94.175	ENSMAUG00000009276	Lsm7	100	94.175	Mesocricetus_auratus
ENSOMEG00000012806	lsm7	100	95.146	ENSMICG00000028619	-	100	95.146	Microcebus_murinus
ENSOMEG00000012806	lsm7	100	94.175	ENSMICG00000009988	-	100	94.175	Microcebus_murinus
ENSOMEG00000012806	lsm7	100	94.175	ENSMOCG00000016925	Lsm7	100	94.175	Microtus_ochrogaster
ENSOMEG00000012806	lsm7	100	100.000	ENSMMOG00000019645	lsm7	98	100.000	Mola_mola
ENSOMEG00000012806	lsm7	100	96.117	ENSMODG00000004722	LSM7	100	96.117	Monodelphis_domestica
ENSOMEG00000012806	lsm7	100	99.029	ENSMALG00000014511	lsm7	79	99.029	Monopterus_albus
ENSOMEG00000012806	lsm7	99	94.118	MGP_CAROLIEiJ_G0015607	Lsm7	99	94.118	Mus_caroli
ENSOMEG00000012806	lsm7	99	94.118	ENSMUSG00000035215	Lsm7	99	94.118	Mus_musculus
ENSOMEG00000012806	lsm7	99	94.118	MGP_PahariEiJ_G0031020	Lsm7	99	94.118	Mus_pahari
ENSOMEG00000012806	lsm7	99	94.118	MGP_SPRETEiJ_G0016425	Lsm7	99	94.118	Mus_spretus
ENSOMEG00000012806	lsm7	100	92.233	ENSMLUG00000013097	-	100	92.233	Myotis_lucifugus
ENSOMEG00000012806	lsm7	99	89.216	ENSMLUG00000024002	-	94	89.216	Myotis_lucifugus
ENSOMEG00000012806	lsm7	100	93.204	ENSNGAG00000021637	Lsm7	100	93.204	Nannospalax_galili
ENSOMEG00000012806	lsm7	98	99.010	ENSNBRG00000015770	lsm7	89	97.087	Neolamprologus_brichardi
ENSOMEG00000012806	lsm7	100	97.087	ENSNBRG00000001237	-	81	99.010	Neolamprologus_brichardi
ENSOMEG00000012806	lsm7	100	95.146	ENSNLEG00000002265	LSM7	100	95.146	Nomascus_leucogenys
ENSOMEG00000012806	lsm7	100	95.146	ENSODEG00000013590	-	100	95.146	Octodon_degus
ENSOMEG00000012806	lsm7	100	75.728	ENSODEG00000008190	-	100	75.728	Octodon_degus
ENSOMEG00000012806	lsm7	100	88.350	ENSODEG00000018769	-	100	88.350	Octodon_degus
ENSOMEG00000012806	lsm7	100	99.029	ENSONIG00000001801	lsm7	89	99.029	Oreochromis_niloticus
ENSOMEG00000012806	lsm7	100	100.000	ENSORLG00000023951	lsm7	100	100.000	Oryzias_latipes
ENSOMEG00000012806	lsm7	100	100.000	ENSORLG00020022226	lsm7	100	100.000	Oryzias_latipes_hni
ENSOMEG00000012806	lsm7	100	98.058	ENSORLG00015020044	lsm7	95	99.029	Oryzias_latipes_hsok
ENSOMEG00000012806	lsm7	100	83.495	ENSOGAG00000024373	-	100	83.495	Otolemur_garnettii
ENSOMEG00000012806	lsm7	98	93.069	ENSOGAG00000000144	-	100	92.157	Otolemur_garnettii
ENSOMEG00000012806	lsm7	100	93.204	ENSOARG00000014013	LSM7	100	93.204	Ovis_aries
ENSOMEG00000012806	lsm7	100	95.146	ENSPPAG00000026500	LSM7	100	95.146	Pan_paniscus
ENSOMEG00000012806	lsm7	100	94.175	ENSPPRG00000008624	LSM7	100	94.175	Panthera_pardus
ENSOMEG00000012806	lsm7	98	94.059	ENSPTIG00000016252	LSM7	98	94.059	Panthera_tigris_altaica
ENSOMEG00000012806	lsm7	100	95.146	ENSPTRG00000010233	LSM7	100	95.146	Pan_troglodytes
ENSOMEG00000012806	lsm7	100	95.146	ENSPANG00000020668	LSM7	100	95.146	Papio_anubis
ENSOMEG00000012806	lsm7	100	98.058	ENSPKIG00000011325	lsm7	100	98.058	Paramormyrops_kingsleyae
ENSOMEG00000012806	lsm7	98	97.030	ENSPSIG00000017149	LSM7	89	97.030	Pelodiscus_sinensis
ENSOMEG00000012806	lsm7	100	100.000	ENSPMGG00000006498	lsm7	100	100.000	Periophthalmus_magnuspinnatus
ENSOMEG00000012806	lsm7	100	96.117	ENSPCIG00000030454	LSM7	100	96.117	Phascolarctos_cinereus
ENSOMEG00000012806	lsm7	100	96.117	ENSPFOG00000012467	lsm7	91	96.117	Poecilia_formosa
ENSOMEG00000012806	lsm7	100	96.117	ENSPLAG00000000252	lsm7	95	97.087	Poecilia_latipinna
ENSOMEG00000012806	lsm7	100	96.117	ENSPMEG00000000587	lsm7	95	97.087	Poecilia_mexicana
ENSOMEG00000012806	lsm7	78	77.778	ENSPREG00000016718	lsm7	65	77.778	Poecilia_reticulata
ENSOMEG00000012806	lsm7	71	94.521	ENSPPYG00000009348	-	50	94.521	Pongo_abelii
ENSOMEG00000012806	lsm7	100	95.146	ENSPCOG00000017177	LSM7	100	95.146	Propithecus_coquereli
ENSOMEG00000012806	lsm7	100	99.029	ENSPNYG00000006938	lsm7	100	99.029	Pundamilia_nyererei
ENSOMEG00000012806	lsm7	100	98.058	ENSPNAG00000010141	lsm7	100	98.058	Pygocentrus_nattereri
ENSOMEG00000012806	lsm7	99	95.098	ENSRNOG00000019552	Lsm7	99	95.098	Rattus_norvegicus
ENSOMEG00000012806	lsm7	100	95.146	ENSRBIG00000035978	LSM7	100	95.146	Rhinopithecus_bieti
ENSOMEG00000012806	lsm7	100	95.146	ENSRROG00000034044	LSM7	100	95.146	Rhinopithecus_roxellana
ENSOMEG00000012806	lsm7	83	48.315	YNL147W	-	77	48.315	Saccharomyces_cerevisiae
ENSOMEG00000012806	lsm7	100	95.146	ENSSBOG00000034899	LSM7	100	95.146	Saimiri_boliviensis_boliviensis
ENSOMEG00000012806	lsm7	100	96.117	ENSSFOG00015006728	lsm7	100	96.117	Scleropages_formosus
ENSOMEG00000012806	lsm7	100	98.058	ENSSMAG00000004195	lsm7	93	100.000	Scophthalmus_maximus
ENSOMEG00000012806	lsm7	100	100.000	ENSSDUG00000001863	lsm7	100	100.000	Seriola_dumerili
ENSOMEG00000012806	lsm7	100	100.000	ENSSLDG00000016339	lsm7	100	100.000	Seriola_lalandi_dorsalis
ENSOMEG00000012806	lsm7	100	100.000	ENSSPAG00000015221	lsm7	100	100.000	Stegastes_partitus
ENSOMEG00000012806	lsm7	98	95.050	ENSSSCG00000013463	LSM7	99	95.050	Sus_scrofa
ENSOMEG00000012806	lsm7	98	97.030	ENSTGUG00000000067	LSM7	100	97.030	Taeniopygia_guttata
ENSOMEG00000012806	lsm7	100	98.058	ENSTRUG00000022913	lsm7	100	98.058	Takifugu_rubripes
ENSOMEG00000012806	lsm7	100	98.058	ENSTNIG00000015525	lsm7	100	98.058	Tetraodon_nigroviridis
ENSOMEG00000012806	lsm7	68	82.857	ENSTBEG00000016602	LSM7	100	82.857	Tupaia_belangeri
ENSOMEG00000012806	lsm7	100	92.233	ENSUAMG00000000912	LSM7	86	92.233	Ursus_americanus
ENSOMEG00000012806	lsm7	98	94.059	ENSUMAG00000006556	LSM7	78	95.000	Ursus_maritimus
ENSOMEG00000012806	lsm7	69	94.366	ENSVVUG00000002640	LSM7	65	94.366	Vulpes_vulpes
ENSOMEG00000012806	lsm7	98	95.050	ENSXETG00000022166	lsm7	100	95.050	Xenopus_tropicalis
ENSOMEG00000012806	lsm7	99	98.039	ENSXCOG00000002572	lsm7	100	98.039	Xiphophorus_couchianus
ENSOMEG00000012806	lsm7	100	99.029	ENSXMAG00000018630	lsm7	100	99.029	Xiphophorus_maculatus