EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSOMEG00000012894 (Gene tree)
Gene ID: 112149096
Gene Symbol: gfm1
Alias: -
Full Name: G elongation factor mitochondrial 1
Gene Type: protein_coding
Species: Oryzias_melastigma
Status: putative
Strand: Plus strand
Length: 14502 bases
Position: chrNVQA01000013.1:13602800-13617301
Accession: 112149096
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOMEP00000011562	GTP_EFTU	PF00009.27	2.3e-63	1	1
ENSOMEP00000029294	GTP_EFTU	PF00009.27	2.3e-63	1	1
ENSOMEP00000029294	GTP_EFTU_D2	PF03144.25	1.5e-16	1	1
ENSOMEP00000011562	GTP_EFTU_D2	PF03144.25	1.5e-16	1	1
ENSOMEP00000011562	EFG_IV	PF03764.18	2.8e-37	1	1
ENSOMEP00000029294	EFG_IV	PF03764.18	2.8e-37	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOMET00000018696	-	2211	-	ENSOMEP00000011562	736 (aa)	-	-
ENSOMET00000018637	-	4690	-	ENSOMEP00000029294	748 (aa)	XP_024132321	UPI000CF7B42D

Gene Model

Click here to download ENSOMEG00000012894's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOMEG00000012894's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSOMEG00000012894	gfm1	94	33.110	ENSOMEG00000013774	gfm2	96	32.976
ENSOMEG00000012894	gfm1	74	39.597	ENSOMEG00000020260	eef2b	72	39.597

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOMEG00000012894	gfm1	97	81.267	ENSG00000168827	GFM1	100	93.333	Homo_sapiens
ENSOMEG00000012894	gfm1	92	89.390	ENSAPOG00000016489	gfm1	98	89.390	Acanthochromis_polyacanthus
ENSOMEG00000012894	gfm1	96	82.730	ENSAMEG00000013542	GFM1	95	82.730	Ailuropoda_melanoleuca
ENSOMEG00000012894	gfm1	97	87.448	ENSACIG00000014465	gfm1	94	87.448	Amphilophus_citrinellus
ENSOMEG00000012894	gfm1	100	90.107	ENSAOCG00000006023	gfm1	100	90.107	Amphiprion_ocellaris
ENSOMEG00000012894	gfm1	100	89.840	ENSAPEG00000024499	gfm1	100	89.840	Amphiprion_percula
ENSOMEG00000012894	gfm1	100	88.636	ENSATEG00000013789	gfm1	100	88.636	Anabas_testudineus
ENSOMEG00000012894	gfm1	97	81.103	ENSAPLG00000005022	GFM1	100	81.103	Anas_platyrhynchos
ENSOMEG00000012894	gfm1	99	79.296	ENSACAG00000006829	GFM1	100	79.296	Anolis_carolinensis
ENSOMEG00000012894	gfm1	97	81.267	ENSANAG00000035983	GFM1	97	81.267	Aotus_nancymaae
ENSOMEG00000012894	gfm1	100	92.112	ENSACLG00000016586	gfm1	100	92.112	Astatotilapia_calliptera
ENSOMEG00000012894	gfm1	100	84.154	ENSAMXG00000013435	gfm1	97	86.169	Astyanax_mexicanus
ENSOMEG00000012894	gfm1	96	82.033	ENSBTAG00000027795	GFM1	95	82.033	Bos_taurus
ENSOMEG00000012894	gfm1	94	57.143	WBGene00009246	gfm-1	95	56.821	Caenorhabditis_elegans
ENSOMEG00000012894	gfm1	97	81.818	ENSCJAG00000000363	GFM1	97	81.818	Callithrix_jacchus
ENSOMEG00000012894	gfm1	96	82.451	ENSCAFG00000009006	GFM1	100	82.101	Canis_familiaris
ENSOMEG00000012894	gfm1	96	82.451	ENSCAFG00020005878	GFM1	98	82.451	Canis_lupus_dingo
ENSOMEG00000012894	gfm1	96	82.173	ENSCHIG00000015220	GFM1	95	82.173	Capra_hircus
ENSOMEG00000012894	gfm1	100	80.080	ENSTSYG00000002013	GFM1	100	80.080	Carlito_syrichta
ENSOMEG00000012894	gfm1	100	69.139	ENSCAPG00000005699	GFM1	100	69.139	Cavia_aperea
ENSOMEG00000012894	gfm1	100	79.178	ENSCPOG00000001194	GFM1	100	79.178	Cavia_porcellus
ENSOMEG00000012894	gfm1	97	81.543	ENSCCAG00000025561	GFM1	97	81.543	Cebus_capucinus
ENSOMEG00000012894	gfm1	97	81.267	ENSCATG00000037622	GFM1	97	81.267	Cercocebus_atys
ENSOMEG00000012894	gfm1	97	80.579	ENSCLAG00000002503	GFM1	96	80.579	Chinchilla_lanigera
ENSOMEG00000012894	gfm1	97	81.267	ENSCSAG00000012162	GFM1	97	81.267	Chlorocebus_sabaeus
ENSOMEG00000012894	gfm1	97	72.452	ENSCHOG00000004867	GFM1	96	72.452	Choloepus_hoffmanni
ENSOMEG00000012894	gfm1	99	80.697	ENSCPBG00000018367	GFM1	99	80.697	Chrysemys_picta_bellii
ENSOMEG00000012894	gfm1	95	58.322	ENSCING00000011960	-	93	59.301	Ciona_intestinalis
ENSOMEG00000012894	gfm1	95	59.306	ENSCSAVG00000008514	-	99	59.402	Ciona_savignyi
ENSOMEG00000012894	gfm1	97	81.267	ENSCANG00000031714	GFM1	97	81.267	Colobus_angolensis_palliatus
ENSOMEG00000012894	gfm1	96	82.287	ENSCGRG00001022095	GFM1	95	82.287	Cricetulus_griseus_chok1gshd
ENSOMEG00000012894	gfm1	96	82.287	ENSCGRG00000012043	GFM1	95	82.287	Cricetulus_griseus_crigri
ENSOMEG00000012894	gfm1	97	82.988	ENSCSEG00000017088	gfm1	99	82.988	Cynoglossus_semilaevis
ENSOMEG00000012894	gfm1	100	92.380	ENSCVAG00000004126	gfm1	100	92.380	Cyprinodon_variegatus
ENSOMEG00000012894	gfm1	100	82.754	ENSDARG00000063624	gfm1	100	82.754	Danio_rerio
ENSOMEG00000012894	gfm1	55	79.707	ENSDNOG00000016385	-	100	79.707	Dasypus_novemcinctus
ENSOMEG00000012894	gfm1	100	77.822	ENSDORG00000014165	Gfm1	100	77.822	Dipodomys_ordii
ENSOMEG00000012894	gfm1	98	67.524	FBgn0263133	mEFG1	99	67.524	Drosophila_melanogaster
ENSOMEG00000012894	gfm1	96	74.202	ENSETEG00000019197	GFM1	95	74.202	Echinops_telfairi
ENSOMEG00000012894	gfm1	90	63.259	ENSEBUG00000012794	gfm1	100	63.259	Eptatretus_burgeri
ENSOMEG00000012894	gfm1	96	60.972	ENSEEUG00000000429	GFM1	99	60.972	Erinaceus_europaeus
ENSOMEG00000012894	gfm1	100	85.695	ENSELUG00000014728	gfm1	100	85.695	Esox_lucius
ENSOMEG00000012894	gfm1	97	81.956	ENSFCAG00000013291	GFM1	96	81.956	Felis_catus
ENSOMEG00000012894	gfm1	90	81.037	ENSFALG00000007619	GFM1	100	81.037	Ficedula_albicollis
ENSOMEG00000012894	gfm1	100	79.178	ENSFDAG00000016559	GFM1	100	79.178	Fukomys_damarensis
ENSOMEG00000012894	gfm1	100	90.374	ENSFHEG00000006091	gfm1	100	90.374	Fundulus_heteroclitus
ENSOMEG00000012894	gfm1	97	86.657	ENSGMOG00000010161	gfm1	100	86.657	Gadus_morhua
ENSOMEG00000012894	gfm1	97	81.241	ENSGALG00000009634	GFM1	98	81.241	Gallus_gallus
ENSOMEG00000012894	gfm1	100	90.909	ENSGAFG00000012527	gfm1	100	90.909	Gambusia_affinis
ENSOMEG00000012894	gfm1	100	89.319	ENSGACG00000009864	gfm1	100	89.319	Gasterosteus_aculeatus
ENSOMEG00000012894	gfm1	97	81.543	ENSGGOG00000003085	GFM1	100	79.627	Gorilla_gorilla
ENSOMEG00000012894	gfm1	100	92.246	ENSHBUG00000002120	gfm1	100	92.246	Haplochromis_burtoni
ENSOMEG00000012894	gfm1	99	79.273	ENSHGLG00000016855	GFM1	99	79.301	Heterocephalus_glaber_female
ENSOMEG00000012894	gfm1	99	79.273	ENSHGLG00100013049	GFM1	99	79.301	Heterocephalus_glaber_male
ENSOMEG00000012894	gfm1	100	89.706	ENSHCOG00000007638	gfm1	100	89.706	Hippocampus_comes
ENSOMEG00000012894	gfm1	100	84.091	ENSIPUG00000005873	gfm1	100	84.091	Ictalurus_punctatus
ENSOMEG00000012894	gfm1	100	77.570	ENSSTOG00000010150	GFM1	100	77.570	Ictidomys_tridecemlineatus
ENSOMEG00000012894	gfm1	97	81.103	ENSJJAG00000016447	Gfm1	97	81.103	Jaculus_jaculus
ENSOMEG00000012894	gfm1	100	87.433	ENSKMAG00000020768	gfm1	100	87.433	Kryptolebias_marmoratus
ENSOMEG00000012894	gfm1	94	91.013	ENSLBEG00000021315	gfm1	100	91.013	Labrus_bergylta
ENSOMEG00000012894	gfm1	100	79.947	ENSLACG00000012295	GFM1	100	79.947	Latimeria_chalumnae
ENSOMEG00000012894	gfm1	97	79.207	ENSLOCG00000003778	gfm1	100	79.207	Lepisosteus_oculatus
ENSOMEG00000012894	gfm1	99	77.437	ENSLAFG00000010945	GFM1	99	78.333	Loxodonta_africana
ENSOMEG00000012894	gfm1	97	81.267	ENSMFAG00000035731	GFM1	97	81.267	Macaca_fascicularis
ENSOMEG00000012894	gfm1	97	81.267	ENSMMUG00000004961	GFM1	97	81.267	Macaca_mulatta
ENSOMEG00000012894	gfm1	97	81.129	ENSMNEG00000033245	GFM1	97	81.129	Macaca_nemestrina
ENSOMEG00000012894	gfm1	97	79.448	ENSMLEG00000030908	GFM1	99	79.324	Mandrillus_leucophaeus
ENSOMEG00000012894	gfm1	100	89.840	ENSMAMG00000011760	gfm1	100	89.840	Mastacembelus_armatus
ENSOMEG00000012894	gfm1	100	92.246	ENSMZEG00005016639	gfm1	100	92.246	Maylandia_zebra
ENSOMEG00000012894	gfm1	97	81.215	ENSMGAG00000010641	GFM1	97	81.215	Meleagris_gallopavo
ENSOMEG00000012894	gfm1	97	81.793	ENSMAUG00000000611	Gfm1	97	81.793	Mesocricetus_auratus
ENSOMEG00000012894	gfm1	97	81.818	ENSMICG00000049086	GFM1	96	81.818	Microcebus_murinus
ENSOMEG00000012894	gfm1	96	82.754	ENSMOCG00000000465	Gfm1	96	82.754	Microtus_ochrogaster
ENSOMEG00000012894	gfm1	97	90.358	ENSMMOG00000012538	gfm1	98	90.358	Mola_mola
ENSOMEG00000012894	gfm1	97	81.103	ENSMODG00000015673	GFM1	98	81.103	Monodelphis_domestica
ENSOMEG00000012894	gfm1	96	88.842	ENSMALG00000012508	gfm1	95	88.842	Monopterus_albus
ENSOMEG00000012894	gfm1	96	82.008	MGP_CAROLIEiJ_G0025052	Gfm1	95	82.008	Mus_caroli
ENSOMEG00000012894	gfm1	96	81.869	ENSMUSG00000027774	Gfm1	95	81.869	Mus_musculus
ENSOMEG00000012894	gfm1	97	81.103	MGP_PahariEiJ_G0026495	Gfm1	97	81.103	Mus_pahari
ENSOMEG00000012894	gfm1	96	81.869	MGP_SPRETEiJ_G0025994	Gfm1	95	81.869	Mus_spretus
ENSOMEG00000012894	gfm1	98	81.199	ENSMPUG00000002859	GFM1	97	81.199	Mustela_putorius_furo
ENSOMEG00000012894	gfm1	97	82.369	ENSMLUG00000000452	GFM1	96	82.369	Myotis_lucifugus
ENSOMEG00000012894	gfm1	97	80.828	ENSNGAG00000012375	Gfm1	97	80.828	Nannospalax_galili
ENSOMEG00000012894	gfm1	97	92.720	ENSNBRG00000004631	gfm1	99	92.720	Neolamprologus_brichardi
ENSOMEG00000012894	gfm1	97	81.543	ENSNLEG00000004176	GFM1	100	79.627	Nomascus_leucogenys
ENSOMEG00000012894	gfm1	91	73.088	ENSMEUG00000007784	GFM1	99	73.088	Notamacropus_eugenii
ENSOMEG00000012894	gfm1	98	80.355	ENSOPRG00000009860	GFM1	99	80.355	Ochotona_princeps
ENSOMEG00000012894	gfm1	97	81.129	ENSODEG00000004316	GFM1	96	81.129	Octodon_degus
ENSOMEG00000012894	gfm1	100	92.380	ENSONIG00000003772	gfm1	100	92.380	Oreochromis_niloticus
ENSOMEG00000012894	gfm1	97	82.143	ENSOCUG00000013561	GFM1	97	82.143	Oryctolagus_cuniculus
ENSOMEG00000012894	gfm1	95	95.198	ENSORLG00000006487	gfm1	100	95.198	Oryzias_latipes
ENSOMEG00000012894	gfm1	100	95.053	ENSORLG00020003362	gfm1	100	95.053	Oryzias_latipes_hni
ENSOMEG00000012894	gfm1	100	94.920	ENSORLG00015005829	gfm1	100	94.920	Oryzias_latipes_hsok
ENSOMEG00000012894	gfm1	97	80.992	ENSOGAG00000008298	GFM1	96	80.992	Otolemur_garnettii
ENSOMEG00000012894	gfm1	96	81.276	ENSOARG00000002409	GFM1	99	81.276	Ovis_aries
ENSOMEG00000012894	gfm1	97	81.543	ENSPPAG00000033881	GFM1	100	79.627	Pan_paniscus
ENSOMEG00000012894	gfm1	97	81.956	ENSPPRG00000009281	GFM1	96	81.956	Panthera_pardus
ENSOMEG00000012894	gfm1	97	81.818	ENSPTIG00000012416	GFM1	96	81.818	Panthera_tigris_altaica
ENSOMEG00000012894	gfm1	97	81.543	ENSPTRG00000015570	GFM1	100	79.627	Pan_troglodytes
ENSOMEG00000012894	gfm1	97	81.129	ENSPANG00000016512	GFM1	97	81.129	Papio_anubis
ENSOMEG00000012894	gfm1	100	82.620	ENSPKIG00000004876	gfm1	100	82.620	Paramormyrops_kingsleyae
ENSOMEG00000012894	gfm1	99	81.099	ENSPSIG00000012567	GFM1	99	81.099	Pelodiscus_sinensis
ENSOMEG00000012894	gfm1	97	87.862	ENSPMGG00000014068	gfm1	100	87.862	Periophthalmus_magnuspinnatus
ENSOMEG00000012894	gfm1	96	82.287	ENSPEMG00000008942	Gfm1	95	82.287	Peromyscus_maniculatus_bairdii
ENSOMEG00000012894	gfm1	86	78.438	ENSPCIG00000020195	GFM1	96	80.744	Phascolarctos_cinereus
ENSOMEG00000012894	gfm1	100	91.711	ENSPFOG00000011022	gfm1	100	91.711	Poecilia_formosa
ENSOMEG00000012894	gfm1	97	92.127	ENSPLAG00000019585	gfm1	100	91.433	Poecilia_latipinna
ENSOMEG00000012894	gfm1	100	91.578	ENSPMEG00000012376	gfm1	100	91.578	Poecilia_mexicana
ENSOMEG00000012894	gfm1	100	91.578	ENSPREG00000001332	gfm1	95	91.578	Poecilia_reticulata
ENSOMEG00000012894	gfm1	97	81.405	ENSPPYG00000014244	GFM1	100	79.494	Pongo_abelii
ENSOMEG00000012894	gfm1	94	79.943	ENSPCAG00000008934	GFM1	100	79.943	Procavia_capensis
ENSOMEG00000012894	gfm1	98	81.310	ENSPCOG00000022259	GFM1	97	81.310	Propithecus_coquereli
ENSOMEG00000012894	gfm1	97	80.854	ENSPVAG00000013605	GFM1	96	80.854	Pteropus_vampyrus
ENSOMEG00000012894	gfm1	100	91.979	ENSPNYG00000006037	gfm1	100	91.979	Pundamilia_nyererei
ENSOMEG00000012894	gfm1	100	84.358	ENSPNAG00000001237	gfm1	100	84.358	Pygocentrus_nattereri
ENSOMEG00000012894	gfm1	97	80.966	ENSRNOG00000012873	Gfm1	97	80.966	Rattus_norvegicus
ENSOMEG00000012894	gfm1	97	81.267	ENSRBIG00000031363	GFM1	97	81.267	Rhinopithecus_bieti
ENSOMEG00000012894	gfm1	97	81.405	ENSRROG00000031081	GFM1	97	81.405	Rhinopithecus_roxellana
ENSOMEG00000012894	gfm1	96	54.132	YLR069C	-	94	54.132	Saccharomyces_cerevisiae
ENSOMEG00000012894	gfm1	97	81.543	ENSSBOG00000023252	GFM1	97	81.543	Saimiri_boliviensis_boliviensis
ENSOMEG00000012894	gfm1	98	81.471	ENSSHAG00000017772	GFM1	98	81.471	Sarcophilus_harrisii
ENSOMEG00000012894	gfm1	100	82.777	ENSSFOG00015003117	gfm1	100	82.777	Scleropages_formosus
ENSOMEG00000012894	gfm1	100	88.503	ENSSMAG00000013221	gfm1	100	88.503	Scophthalmus_maximus
ENSOMEG00000012894	gfm1	100	91.043	ENSSDUG00000018665	gfm1	100	91.043	Seriola_dumerili
ENSOMEG00000012894	gfm1	100	90.909	ENSSLDG00000020606	gfm1	100	90.909	Seriola_lalandi_dorsalis
ENSOMEG00000012894	gfm1	99	78.349	ENSSPUG00000018686	GFM1	100	78.349	Sphenodon_punctatus
ENSOMEG00000012894	gfm1	100	91.845	ENSSPAG00000008800	gfm1	100	91.845	Stegastes_partitus
ENSOMEG00000012894	gfm1	96	81.616	ENSSSCG00000025651	GFM1	95	81.616	Sus_scrofa
ENSOMEG00000012894	gfm1	100	86.497	ENSTRUG00000009244	gfm1	100	86.497	Takifugu_rubripes
ENSOMEG00000012894	gfm1	100	89.037	ENSTNIG00000007729	gfm1	100	89.037	Tetraodon_nigroviridis
ENSOMEG00000012894	gfm1	90	73.333	ENSTBEG00000017404	GFM1	89	73.333	Tupaia_belangeri
ENSOMEG00000012894	gfm1	96	81.616	ENSTTRG00000001735	GFM1	95	81.616	Tursiops_truncatus
ENSOMEG00000012894	gfm1	98	81.446	ENSUAMG00000026381	GFM1	97	81.446	Ursus_americanus
ENSOMEG00000012894	gfm1	98	81.446	ENSUMAG00000011268	GFM1	97	81.446	Ursus_maritimus
ENSOMEG00000012894	gfm1	98	77.915	ENSVPAG00000009444	GFM1	97	77.915	Vicugna_pacos
ENSOMEG00000012894	gfm1	96	82.263	ENSVVUG00000020091	GFM1	100	81.805	Vulpes_vulpes
ENSOMEG00000012894	gfm1	96	83.983	ENSXETG00000032551	GFM1	95	83.983	Xenopus_tropicalis
ENSOMEG00000012894	gfm1	54	88.806	ENSXCOG00000012590	gfm1	92	88.806	Xiphophorus_couchianus
ENSOMEG00000012894	gfm1	100	91.310	ENSXMAG00000000261	gfm1	100	91.310	Xiphophorus_maculatus