EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSOMEG00000012930 (Gene tree)
Gene ID: 112152631
Gene Symbol: usb1
Alias: -
Full Name: U6 snRNA biogenesis phosphodiesterase 1
Gene Type: protein_coding
Species: Oryzias_melastigma
Status: putative
Strand: Minus strand
Length: 6526 bases
Position: chrNVQA01000016.1:9459433-9465958
Accession: 112152631
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOMEP00000029350	HVSL	PF09749.9	1.7e-64	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOMET00000018733	-	2884	-	ENSOMEP00000029350	276 (aa)	XP_024138087	UPI000CF7C954

Gene Model

Click here to download ENSOMEG00000012930's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOMEG00000012930's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOMEG00000012930	usb1	82	50.000	ENSG00000103005	USB1	100	51.402	Homo_sapiens
ENSOMEG00000012930	usb1	99	74.552	ENSAPOG00000011942	usb1	99	74.552	Acanthochromis_polyacanthus
ENSOMEG00000012930	usb1	99	47.273	ENSAMEG00000017205	USB1	83	51.339	Ailuropoda_melanoleuca
ENSOMEG00000012930	usb1	82	77.974	ENSACIG00000012234	usb1	84	77.974	Amphilophus_citrinellus
ENSOMEG00000012930	usb1	99	76.157	ENSAOCG00000014831	usb1	99	76.157	Amphiprion_ocellaris
ENSOMEG00000012930	usb1	99	76.157	ENSAPEG00000000296	usb1	99	76.157	Amphiprion_percula
ENSOMEG00000012930	usb1	99	73.929	ENSATEG00000009348	usb1	99	73.929	Anabas_testudineus
ENSOMEG00000012930	usb1	80	52.889	ENSAPLG00000002756	USB1	99	52.889	Anas_platyrhynchos
ENSOMEG00000012930	usb1	80	49.778	ENSACAG00000015481	USB1	98	49.778	Anolis_carolinensis
ENSOMEG00000012930	usb1	82	48.684	ENSANAG00000035640	USB1	85	49.115	Aotus_nancymaae
ENSOMEG00000012930	usb1	100	70.463	ENSACLG00000020586	usb1	100	70.819	Astatotilapia_calliptera
ENSOMEG00000012930	usb1	99	55.311	ENSAMXG00000040146	usb1	74	64.286	Astyanax_mexicanus
ENSOMEG00000012930	usb1	99	45.818	ENSBTAG00000015758	USB1	85	50.000	Bos_taurus
ENSOMEG00000012930	usb1	82	50.000	ENSCJAG00000011733	USB1	85	50.442	Callithrix_jacchus
ENSOMEG00000012930	usb1	99	45.255	ENSCAFG00000008556	USB1	62	48.069	Canis_familiaris
ENSOMEG00000012930	usb1	99	46.350	ENSCAFG00020009263	USB1	84	50.224	Canis_lupus_dingo
ENSOMEG00000012930	usb1	99	45.091	ENSCHIG00000024290	USB1	85	49.554	Capra_hircus
ENSOMEG00000012930	usb1	82	49.123	ENSTSYG00000006997	USB1	86	49.123	Carlito_syrichta
ENSOMEG00000012930	usb1	82	40.789	ENSCAPG00000009057	USB1	98	40.789	Cavia_aperea
ENSOMEG00000012930	usb1	99	45.455	ENSCPOG00000014325	USB1	85	50.000	Cavia_porcellus
ENSOMEG00000012930	usb1	82	49.561	ENSCCAG00000022132	USB1	85	50.000	Cebus_capucinus
ENSOMEG00000012930	usb1	82	50.000	ENSCATG00000032174	USB1	85	50.442	Cercocebus_atys
ENSOMEG00000012930	usb1	62	49.711	ENSCLAG00000007363	USB1	87	50.980	Chinchilla_lanigera
ENSOMEG00000012930	usb1	82	49.561	ENSCSAG00000004783	USB1	85	50.000	Chlorocebus_sabaeus
ENSOMEG00000012930	usb1	85	51.271	ENSCPBG00000026943	USB1	85	51.271	Chrysemys_picta_bellii
ENSOMEG00000012930	usb1	80	31.739	ENSCSAVG00000000894	-	83	31.140	Ciona_savignyi
ENSOMEG00000012930	usb1	82	50.885	ENSCANG00000037135	USB1	86	50.885	Colobus_angolensis_palliatus
ENSOMEG00000012930	usb1	99	46.545	ENSCGRG00001011243	USB1	84	51.339	Cricetulus_griseus_chok1gshd
ENSOMEG00000012930	usb1	99	46.545	ENSCGRG00000013252	USB1	84	51.339	Cricetulus_griseus_crigri
ENSOMEG00000012930	usb1	99	68.000	ENSCSEG00000013881	usb1	99	68.000	Cynoglossus_semilaevis
ENSOMEG00000012930	usb1	81	75.771	ENSCVAG00000009252	usb1	97	75.771	Cyprinodon_variegatus
ENSOMEG00000012930	usb1	81	62.054	ENSDARG00000003841	usb1	81	62.054	Danio_rerio
ENSOMEG00000012930	usb1	99	46.182	ENSDORG00000001888	Usb1	85	50.000	Dipodomys_ordii
ENSOMEG00000012930	usb1	99	37.143	FBgn0037713	CG16790	89	38.462	Drosophila_melanogaster
ENSOMEG00000012930	usb1	99	39.855	ENSETEG00000019682	USB1	96	39.300	Echinops_telfairi
ENSOMEG00000012930	usb1	84	45.299	ENSEBUG00000005889	usb1	81	45.299	Eptatretus_burgeri
ENSOMEG00000012930	usb1	99	46.909	ENSEASG00005005484	USB1	85	51.339	Equus_asinus_asinus
ENSOMEG00000012930	usb1	99	46.545	ENSECAG00000019493	USB1	77	51.121	Equus_caballus
ENSOMEG00000012930	usb1	62	45.665	ENSEEUG00000000154	USB1	58	45.752	Erinaceus_europaeus
ENSOMEG00000012930	usb1	85	63.983	ENSELUG00000010974	usb1	89	62.551	Esox_lucius
ENSOMEG00000012930	usb1	99	46.909	ENSFCAG00000002693	USB1	84	50.446	Felis_catus
ENSOMEG00000012930	usb1	82	53.097	ENSFALG00000006876	USB1	85	53.097	Ficedula_albicollis
ENSOMEG00000012930	usb1	99	46.739	ENSFDAG00000010052	USB1	87	48.927	Fukomys_damarensis
ENSOMEG00000012930	usb1	88	68.033	ENSFHEG00000012334	usb1	98	68.852	Fundulus_heteroclitus
ENSOMEG00000012930	usb1	81	70.852	ENSGMOG00000004228	usb1	100	70.852	Gadus_morhua
ENSOMEG00000012930	usb1	80	52.915	ENSGALG00000035604	USB1	88	53.125	Gallus_gallus
ENSOMEG00000012930	usb1	100	71.326	ENSGAFG00000021890	usb1	86	76.371	Gambusia_affinis
ENSOMEG00000012930	usb1	99	69.892	ENSGACG00000003257	usb1	99	69.176	Gasterosteus_aculeatus
ENSOMEG00000012930	usb1	99	50.730	ENSGAGG00000022572	USB1	93	50.198	Gopherus_agassizii
ENSOMEG00000012930	usb1	82	50.439	ENSGGOG00000017147	USB1	85	50.885	Gorilla_gorilla
ENSOMEG00000012930	usb1	100	71.071	ENSHBUG00000009823	usb1	100	71.071	Haplochromis_burtoni
ENSOMEG00000012930	usb1	99	46.350	ENSHGLG00000016078	USB1	82	50.224	Heterocephalus_glaber_female
ENSOMEG00000012930	usb1	99	46.350	ENSHGLG00100005562	USB1	82	50.224	Heterocephalus_glaber_male
ENSOMEG00000012930	usb1	79	76.606	ENSHCOG00000015633	usb1	87	76.786	Hippocampus_comes
ENSOMEG00000012930	usb1	99	55.556	ENSIPUG00000008601	usb1	100	55.556	Ictalurus_punctatus
ENSOMEG00000012930	usb1	81	50.893	ENSSTOG00000007548	USB1	82	50.893	Ictidomys_tridecemlineatus
ENSOMEG00000012930	usb1	99	46.545	ENSJJAG00000021859	Usb1	84	51.786	Jaculus_jaculus
ENSOMEG00000012930	usb1	99	72.982	ENSKMAG00000007200	usb1	90	74.803	Kryptolebias_marmoratus
ENSOMEG00000012930	usb1	87	70.248	ENSLBEG00000008452	usb1	76	70.248	Labrus_bergylta
ENSOMEG00000012930	usb1	74	51.675	ENSLACG00000000105	USB1	83	50.628	Latimeria_chalumnae
ENSOMEG00000012930	usb1	93	53.101	ENSLOCG00000000465	usb1	83	55.144	Lepisosteus_oculatus
ENSOMEG00000012930	usb1	99	38.652	ENSLAFG00000002267	USB1	84	41.277	Loxodonta_africana
ENSOMEG00000012930	usb1	82	50.000	ENSMFAG00000003926	USB1	85	50.442	Macaca_fascicularis
ENSOMEG00000012930	usb1	82	50.000	ENSMMUG00000022669	USB1	85	50.442	Macaca_mulatta
ENSOMEG00000012930	usb1	82	49.561	ENSMNEG00000042487	USB1	85	50.000	Macaca_nemestrina
ENSOMEG00000012930	usb1	82	50.000	ENSMLEG00000028756	USB1	85	50.442	Mandrillus_leucophaeus
ENSOMEG00000012930	usb1	99	72.401	ENSMAMG00000015092	usb1	99	71.841	Mastacembelus_armatus
ENSOMEG00000012930	usb1	100	71.429	ENSMZEG00005010008	usb1	100	71.429	Maylandia_zebra
ENSOMEG00000012930	usb1	99	47.273	ENSMAUG00000007832	Usb1	84	51.339	Mesocricetus_auratus
ENSOMEG00000012930	usb1	81	51.786	ENSMICG00000004900	USB1	85	51.786	Microcebus_murinus
ENSOMEG00000012930	usb1	99	47.273	ENSMOCG00000022647	Usb1	84	52.232	Microtus_ochrogaster
ENSOMEG00000012930	usb1	81	74.107	ENSMMOG00000000490	usb1	97	68.000	Mola_mola
ENSOMEG00000012930	usb1	78	50.233	ENSMODG00000014067	USB1	84	50.000	Monodelphis_domestica
ENSOMEG00000012930	usb1	100	73.759	ENSMALG00000005930	usb1	100	74.823	Monopterus_albus
ENSOMEG00000012930	usb1	99	48.000	MGP_CAROLIEiJ_G0031421	Usb1	99	52.679	Mus_caroli
ENSOMEG00000012930	usb1	99	47.687	ENSMUSG00000031792	Usb1	99	52.679	Mus_musculus
ENSOMEG00000012930	usb1	99	47.273	MGP_PahariEiJ_G0023019	Usb1	100	53.846	Mus_pahari
ENSOMEG00000012930	usb1	99	48.000	MGP_SPRETEiJ_G0032540	Usb1	85	50.877	Mus_spretus
ENSOMEG00000012930	usb1	99	46.545	ENSMPUG00000004684	USB1	80	50.446	Mustela_putorius_furo
ENSOMEG00000012930	usb1	81	52.232	ENSMLUG00000007400	USB1	97	52.232	Myotis_lucifugus
ENSOMEG00000012930	usb1	99	49.091	ENSNGAG00000009703	Usb1	83	52.232	Nannospalax_galili
ENSOMEG00000012930	usb1	100	65.000	ENSNBRG00000008747	usb1	100	73.832	Neolamprologus_brichardi
ENSOMEG00000012930	usb1	73	52.709	ENSNLEG00000003340	USB1	80	53.234	Nomascus_leucogenys
ENSOMEG00000012930	usb1	56	42.857	ENSMEUG00000003328	-	67	50.980	Notamacropus_eugenii
ENSOMEG00000012930	usb1	99	47.122	ENSODEG00000016214	USB1	85	51.101	Octodon_degus
ENSOMEG00000012930	usb1	99	71.942	ENSONIG00000011063	usb1	100	71.942	Oreochromis_niloticus
ENSOMEG00000012930	usb1	86	48.117	ENSOANG00000012118	USB1	100	48.117	Ornithorhynchus_anatinus
ENSOMEG00000012930	usb1	100	88.406	ENSORLG00000012479	usb1	93	90.588	Oryzias_latipes
ENSOMEG00000012930	usb1	93	89.883	ENSORLG00020018671	usb1	94	90.196	Oryzias_latipes_hni
ENSOMEG00000012930	usb1	93	91.406	ENSORLG00015009679	usb1	94	91.339	Oryzias_latipes_hsok
ENSOMEG00000012930	usb1	81	48.661	ENSOGAG00000003273	USB1	83	48.661	Otolemur_garnettii
ENSOMEG00000012930	usb1	85	47.660	ENSOARG00000001107	USB1	90	47.660	Ovis_aries
ENSOMEG00000012930	usb1	82	50.000	ENSPPAG00000042137	USB1	85	50.442	Pan_paniscus
ENSOMEG00000012930	usb1	99	46.182	ENSPPRG00000024797	USB1	84	50.000	Panthera_pardus
ENSOMEG00000012930	usb1	99	45.818	ENSPTIG00000007506	USB1	84	49.554	Panthera_tigris_altaica
ENSOMEG00000012930	usb1	82	47.368	ENSPTRG00000008172	USB1	100	51.869	Pan_troglodytes
ENSOMEG00000012930	usb1	82	50.000	ENSPANG00000025138	USB1	85	50.442	Papio_anubis
ENSOMEG00000012930	usb1	81	62.222	ENSPKIG00000015109	usb1	76	62.222	Paramormyrops_kingsleyae
ENSOMEG00000012930	usb1	81	42.259	ENSPSIG00000004305	USB1	100	42.259	Pelodiscus_sinensis
ENSOMEG00000012930	usb1	80	68.018	ENSPMGG00000017725	usb1	85	68.018	Periophthalmus_magnuspinnatus
ENSOMEG00000012930	usb1	99	46.570	ENSPEMG00000016183	Usb1	82	50.893	Peromyscus_maniculatus_bairdii
ENSOMEG00000012930	usb1	78	52.511	ENSPMAG00000000462	usb1	92	52.511	Petromyzon_marinus
ENSOMEG00000012930	usb1	100	71.942	ENSPFOG00000011130	usb1	99	71.119	Poecilia_formosa
ENSOMEG00000012930	usb1	100	71.583	ENSPLAG00000009820	usb1	99	71.014	Poecilia_latipinna
ENSOMEG00000012930	usb1	100	71.119	ENSPMEG00000006402	usb1	99	71.119	Poecilia_mexicana
ENSOMEG00000012930	usb1	88	70.082	ENSPREG00000001047	usb1	99	71.721	Poecilia_reticulata
ENSOMEG00000012930	usb1	73	49.510	ENSPPYG00000007401	USB1	81	49.510	Pongo_abelii
ENSOMEG00000012930	usb1	81	50.893	ENSPCOG00000022612	USB1	85	50.893	Propithecus_coquereli
ENSOMEG00000012930	usb1	99	46.545	ENSPVAG00000004613	USB1	86	50.000	Pteropus_vampyrus
ENSOMEG00000012930	usb1	100	70.714	ENSPNYG00000022262	usb1	100	71.071	Pundamilia_nyererei
ENSOMEG00000012930	usb1	81	64.286	ENSPNAG00000011736	usb1	76	64.286	Pygocentrus_nattereri
ENSOMEG00000012930	usb1	99	48.364	ENSRNOG00000013216	Usb1	84	51.786	Rattus_norvegicus
ENSOMEG00000012930	usb1	82	47.368	ENSRBIG00000044466	USB1	100	51.402	Rhinopithecus_bieti
ENSOMEG00000012930	usb1	82	50.000	ENSRROG00000029211	USB1	85	50.442	Rhinopithecus_roxellana
ENSOMEG00000012930	usb1	82	50.000	ENSSBOG00000029362	USB1	85	50.442	Saimiri_boliviensis_boliviensis
ENSOMEG00000012930	usb1	79	48.858	ENSSHAG00000006993	USB1	89	50.000	Sarcophilus_harrisii
ENSOMEG00000012930	usb1	82	63.717	ENSSFOG00015023663	usb1	71	63.717	Scleropages_formosus
ENSOMEG00000012930	usb1	100	68.136	ENSSMAG00000015834	usb1	100	68.136	Scophthalmus_maximus
ENSOMEG00000012930	usb1	99	70.909	ENSSDUG00000002949	usb1	99	70.909	Seriola_dumerili
ENSOMEG00000012930	usb1	99	74.910	ENSSLDG00000014174	usb1	99	74.910	Seriola_lalandi_dorsalis
ENSOMEG00000012930	usb1	77	51.869	ENSSPUG00000006741	USB1	100	51.869	Sphenodon_punctatus
ENSOMEG00000012930	usb1	99	74.205	ENSSPAG00000007484	usb1	99	74.205	Stegastes_partitus
ENSOMEG00000012930	usb1	99	47.273	ENSSSCG00000002807	USB1	87	48.936	Sus_scrofa
ENSOMEG00000012930	usb1	76	54.502	ENSTGUG00000004792	USB1	83	54.502	Taeniopygia_guttata
ENSOMEG00000012930	usb1	99	69.091	ENSTRUG00000021069	usb1	91	72.541	Takifugu_rubripes
ENSOMEG00000012930	usb1	99	57.091	ENSTNIG00000000626	usb1	83	63.229	Tetraodon_nigroviridis
ENSOMEG00000012930	usb1	81	36.161	ENSTBEG00000001507	USB1	97	36.161	Tupaia_belangeri
ENSOMEG00000012930	usb1	99	47.636	ENSUAMG00000016823	USB1	83	51.786	Ursus_americanus
ENSOMEG00000012930	usb1	77	51.869	ENSUMAG00000021369	USB1	100	51.869	Ursus_maritimus
ENSOMEG00000012930	usb1	99	46.350	ENSVVUG00000023700	USB1	92	47.899	Vulpes_vulpes
ENSOMEG00000012930	usb1	75	54.762	ENSXETG00000013795	usb1	88	53.881	Xenopus_tropicalis
ENSOMEG00000012930	usb1	87	75.519	ENSXMAG00000024687	usb1	81	70.612	Xiphophorus_maculatus