EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSOMEG00000013362 (Gene tree)
Gene ID: 112148149
Gene Symbol: sf3a1
Alias: -
Full Name: splicing factor 3a subunit 1
Gene Type: protein_coding
Species: Oryzias_melastigma
Status: putative
Strand: Plus strand
Length: 6085 bases
Position: chrNVQA01000012.1:8561188-8567272
Accession: 112148149
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOMEP00000029588	PRP21_like_P	PF12230.8	6.2e-52	1	1
ENSOMEP00000029588	Surp	PF01805.20	6.6e-46	1	2
ENSOMEP00000029588	Surp	PF01805.20	6.6e-46	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOMET00000019271	-	4081	-	ENSOMEP00000029588	784 (aa)	XP_024130749	UPI000CF7F781

Gene Model

Click here to download ENSOMEG00000013362's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOMEG00000013362's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOMEG00000013362	sf3a1	99	84.000	ENSG00000099995	SF3A1	100	82.767	Homo_sapiens
ENSOMEG00000013362	sf3a1	100	93.384	ENSAPOG00000020465	sf3a1	100	93.639	Acanthochromis_polyacanthus
ENSOMEG00000013362	sf3a1	98	84.245	ENSAMEG00000007737	SF3A1	100	82.560	Ailuropoda_melanoleuca
ENSOMEG00000013362	sf3a1	100	93.384	ENSACIG00000020672	sf3a1	100	93.639	Amphilophus_citrinellus
ENSOMEG00000013362	sf3a1	100	93.384	ENSAOCG00000003060	sf3a1	100	93.639	Amphiprion_ocellaris
ENSOMEG00000013362	sf3a1	100	93.384	ENSAPEG00000010735	sf3a1	100	93.639	Amphiprion_percula
ENSOMEG00000013362	sf3a1	97	92.288	ENSATEG00000021201	sf3a1	96	92.549	Anabas_testudineus
ENSOMEG00000013362	sf3a1	96	84.808	ENSAPLG00000009057	SF3A1	100	83.483	Anas_platyrhynchos
ENSOMEG00000013362	sf3a1	100	79.852	ENSACAG00000009415	SF3A1	100	80.717	Anolis_carolinensis
ENSOMEG00000013362	sf3a1	99	83.484	ENSANAG00000032045	SF3A1	100	82.642	Aotus_nancymaae
ENSOMEG00000013362	sf3a1	100	92.357	ENSACLG00000012622	sf3a1	100	93.376	Astatotilapia_calliptera
ENSOMEG00000013362	sf3a1	99	87.755	ENSAMXG00000005382	sf3a1	99	88.265	Astyanax_mexicanus
ENSOMEG00000013362	sf3a1	99	83.484	ENSBTAG00000003390	SF3A1	100	82.642	Bos_taurus
ENSOMEG00000013362	sf3a1	81	45.644	WBGene00004188	prp-21	59	51.536	Caenorhabditis_elegans
ENSOMEG00000013362	sf3a1	99	83.355	ENSCJAG00000010370	SF3A1	100	82.516	Callithrix_jacchus
ENSOMEG00000013362	sf3a1	99	83.613	ENSCAFG00000012559	SF3A1	100	82.767	Canis_familiaris
ENSOMEG00000013362	sf3a1	99	83.613	ENSCAFG00020000838	SF3A1	100	82.767	Canis_lupus_dingo
ENSOMEG00000013362	sf3a1	99	83.613	ENSCHIG00000018642	SF3A1	100	82.767	Capra_hircus
ENSOMEG00000013362	sf3a1	99	83.742	ENSTSYG00000004739	SF3A1	100	82.893	Carlito_syrichta
ENSOMEG00000013362	sf3a1	95	67.867	ENSCAPG00000015414	SF3A1	98	68.000	Cavia_aperea
ENSOMEG00000013362	sf3a1	99	83.871	ENSCPOG00000014589	SF3A1	100	82.516	Cavia_porcellus
ENSOMEG00000013362	sf3a1	99	83.484	ENSCCAG00000032006	SF3A1	100	82.642	Cebus_capucinus
ENSOMEG00000013362	sf3a1	99	83.613	ENSCATG00000029241	SF3A1	100	82.767	Cercocebus_atys
ENSOMEG00000013362	sf3a1	99	84.000	ENSCLAG00000006508	SF3A1	100	82.516	Chinchilla_lanigera
ENSOMEG00000013362	sf3a1	99	83.613	ENSCSAG00000009470	SF3A1	100	82.767	Chlorocebus_sabaeus
ENSOMEG00000013362	sf3a1	59	87.085	ENSCHOG00000005201	SF3A1	62	87.500	Choloepus_hoffmanni
ENSOMEG00000013362	sf3a1	100	82.680	ENSCPBG00000007595	SF3A1	100	82.807	Chrysemys_picta_bellii
ENSOMEG00000013362	sf3a1	97	52.465	ENSCING00000008526	-	98	52.010	Ciona_intestinalis
ENSOMEG00000013362	sf3a1	97	51.285	ENSCSAVG00000005608	-	92	66.202	Ciona_savignyi
ENSOMEG00000013362	sf3a1	99	83.613	ENSCANG00000033564	SF3A1	100	82.767	Colobus_angolensis_palliatus
ENSOMEG00000013362	sf3a1	97	84.737	ENSCGRG00001008933	Sf3a1	100	82.767	Cricetulus_griseus_chok1gshd
ENSOMEG00000013362	sf3a1	97	84.737	ENSCGRG00000006127	Sf3a1	100	82.767	Cricetulus_griseus_crigri
ENSOMEG00000013362	sf3a1	100	90.343	ENSCSEG00000010792	sf3a1	100	90.343	Cynoglossus_semilaevis
ENSOMEG00000013362	sf3a1	100	91.995	ENSCVAG00000004560	sf3a1	100	92.249	Cyprinodon_variegatus
ENSOMEG00000013362	sf3a1	100	86.038	ENSDARG00000041887	sf3a1	100	91.429	Danio_rerio
ENSOMEG00000013362	sf3a1	99	83.505	ENSDNOG00000010629	SF3A1	100	82.412	Dasypus_novemcinctus
ENSOMEG00000013362	sf3a1	99	83.871	ENSDORG00000005613	Sf3a1	100	82.642	Dipodomys_ordii
ENSOMEG00000013362	sf3a1	85	59.781	FBgn0266917	Sf3a1	86	68.385	Drosophila_melanogaster
ENSOMEG00000013362	sf3a1	85	83.084	ENSETEG00000017194	SF3A1	95	83.683	Echinops_telfairi
ENSOMEG00000013362	sf3a1	97	67.632	ENSEBUG00000001285	sf3a1	95	69.144	Eptatretus_burgeri
ENSOMEG00000013362	sf3a1	99	83.504	ENSEASG00005010254	SF3A1	100	83.019	Equus_asinus_asinus
ENSOMEG00000013362	sf3a1	99	83.504	ENSECAG00000023962	SF3A1	100	83.019	Equus_caballus
ENSOMEG00000013362	sf3a1	74	88.525	ENSEEUG00000003159	SF3A1	83	88.525	Erinaceus_europaeus
ENSOMEG00000013362	sf3a1	100	86.312	ENSELUG00000022578	sf3a1	100	87.452	Esox_lucius
ENSOMEG00000013362	sf3a1	99	83.355	ENSFCAG00000011932	SF3A1	100	82.516	Felis_catus
ENSOMEG00000013362	sf3a1	96	83.862	ENSFALG00000006944	SF3A1	100	82.323	Ficedula_albicollis
ENSOMEG00000013362	sf3a1	99	83.484	ENSFDAG00000009560	SF3A1	100	82.642	Fukomys_damarensis
ENSOMEG00000013362	sf3a1	100	92.376	ENSFHEG00000010866	sf3a1	100	93.011	Fundulus_heteroclitus
ENSOMEG00000013362	sf3a1	100	86.497	ENSGMOG00000016024	sf3a1	100	86.132	Gadus_morhua
ENSOMEG00000013362	sf3a1	96	84.788	ENSGALG00000007937	SF3A1	100	82.828	Gallus_gallus
ENSOMEG00000013362	sf3a1	100	93.520	ENSGAFG00000009111	sf3a1	100	93.774	Gambusia_affinis
ENSOMEG00000013362	sf3a1	100	89.367	ENSGACG00000011893	sf3a1	100	89.367	Gasterosteus_aculeatus
ENSOMEG00000013362	sf3a1	96	82.190	ENSGAGG00000000762	SF3A1	99	82.322	Gopherus_agassizii
ENSOMEG00000013362	sf3a1	99	84.000	ENSGGOG00000012631	SF3A1	100	82.767	Gorilla_gorilla
ENSOMEG00000013362	sf3a1	100	93.503	ENSHBUG00000015795	sf3a1	100	93.503	Haplochromis_burtoni
ENSOMEG00000013362	sf3a1	99	83.484	ENSHGLG00000007907	SF3A1	100	82.642	Heterocephalus_glaber_female
ENSOMEG00000013362	sf3a1	99	83.484	ENSHGLG00100013799	SF3A1	100	82.642	Heterocephalus_glaber_male
ENSOMEG00000013362	sf3a1	100	89.186	ENSHCOG00000015423	sf3a1	100	89.186	Hippocampus_comes
ENSOMEG00000013362	sf3a1	98	84.955	ENSIPUG00000002470	sf3a1	99	85.473	Ictalurus_punctatus
ENSOMEG00000013362	sf3a1	97	84.314	ENSSTOG00000013892	SF3A1	100	82.893	Ictidomys_tridecemlineatus
ENSOMEG00000013362	sf3a1	98	83.984	ENSJJAG00000022566	Sf3a1	100	82.412	Jaculus_jaculus
ENSOMEG00000013362	sf3a1	100	91.094	ENSKMAG00000002400	sf3a1	100	91.730	Kryptolebias_marmoratus
ENSOMEG00000013362	sf3a1	100	92.484	ENSLBEG00000022974	sf3a1	100	92.484	Labrus_bergylta
ENSOMEG00000013362	sf3a1	100	82.532	ENSLACG00000003565	SF3A1	100	83.565	Latimeria_chalumnae
ENSOMEG00000013362	sf3a1	100	87.326	ENSLOCG00000008251	sf3a1	99	87.452	Lepisosteus_oculatus
ENSOMEG00000013362	sf3a1	99	83.484	ENSLAFG00000000448	SF3A1	100	82.642	Loxodonta_africana
ENSOMEG00000013362	sf3a1	97	55.787	ENSLAFG00000026032	-	97	55.284	Loxodonta_africana
ENSOMEG00000013362	sf3a1	99	83.484	ENSMFAG00000031979	SF3A1	100	82.642	Macaca_fascicularis
ENSOMEG00000013362	sf3a1	99	83.484	ENSMMUG00000005547	SF3A1	100	82.642	Macaca_mulatta
ENSOMEG00000013362	sf3a1	99	83.613	ENSMNEG00000037229	SF3A1	100	82.767	Macaca_nemestrina
ENSOMEG00000013362	sf3a1	99	83.613	ENSMLEG00000041908	SF3A1	100	82.767	Mandrillus_leucophaeus
ENSOMEG00000013362	sf3a1	98	92.088	ENSMAMG00000006460	sf3a1	96	92.348	Mastacembelus_armatus
ENSOMEG00000013362	sf3a1	100	92.357	ENSMZEG00005009633	sf3a1	100	93.376	Maylandia_zebra
ENSOMEG00000013362	sf3a1	96	84.788	ENSMGAG00000001330	SF3A1	99	84.245	Meleagris_gallopavo
ENSOMEG00000013362	sf3a1	93	80.381	ENSMAUG00000020317	Sf3a1	100	76.962	Mesocricetus_auratus
ENSOMEG00000013362	sf3a1	99	83.613	ENSMICG00000010038	SF3A1	100	82.516	Microcebus_murinus
ENSOMEG00000013362	sf3a1	99	83.355	ENSMOCG00000008438	Sf3a1	100	82.516	Microtus_ochrogaster
ENSOMEG00000013362	sf3a1	100	89.427	ENSMMOG00000015588	sf3a1	99	89.682	Mola_mola
ENSOMEG00000013362	sf3a1	99	82.946	ENSMODG00000009270	SF3A1	100	82.346	Monodelphis_domestica
ENSOMEG00000013362	sf3a1	100	91.371	ENSMALG00000000148	sf3a1	100	92.132	Monopterus_albus
ENSOMEG00000013362	sf3a1	99	83.097	MGP_CAROLIEiJ_G0016029	Sf3a1	99	82.675	Mus_caroli
ENSOMEG00000013362	sf3a1	99	83.097	ENSMUSG00000002129	Sf3a1	99	82.675	Mus_musculus
ENSOMEG00000013362	sf3a1	99	83.097	MGP_PahariEiJ_G0016862	Sf3a1	99	82.803	Mus_pahari
ENSOMEG00000013362	sf3a1	99	83.097	MGP_SPRETEiJ_G0016870	Sf3a1	99	82.675	Mus_spretus
ENSOMEG00000013362	sf3a1	99	83.355	ENSMPUG00000013144	SF3A1	100	82.893	Mustela_putorius_furo
ENSOMEG00000013362	sf3a1	99	83.355	ENSMLUG00000002139	SF3A1	100	82.516	Myotis_lucifugus
ENSOMEG00000013362	sf3a1	99	84.015	ENSNGAG00000016977	Sf3a1	100	82.893	Nannospalax_galili
ENSOMEG00000013362	sf3a1	100	92.884	ENSNBRG00000016642	sf3a1	100	92.884	Neolamprologus_brichardi
ENSOMEG00000013362	sf3a1	99	83.613	ENSNLEG00000003686	SF3A1	100	82.767	Nomascus_leucogenys
ENSOMEG00000013362	sf3a1	94	75.782	ENSMEUG00000008741	SF3A1	50	75.000	Notamacropus_eugenii
ENSOMEG00000013362	sf3a1	98	84.375	ENSOPRG00000016636	SF3A1	100	82.893	Ochotona_princeps
ENSOMEG00000013362	sf3a1	98	83.875	ENSODEG00000002571	SF3A1	100	82.620	Octodon_degus
ENSOMEG00000013362	sf3a1	100	94.013	ENSONIG00000010848	sf3a1	100	94.013	Oreochromis_niloticus
ENSOMEG00000013362	sf3a1	99	83.484	ENSOCUG00000007633	SF3A1	100	82.642	Oryctolagus_cuniculus
ENSOMEG00000013362	sf3a1	96	96.671	ENSORLG00000013050	sf3a1	99	96.671	Oryzias_latipes
ENSOMEG00000013362	sf3a1	99	93.967	ENSORLG00020003236	sf3a1	98	93.967	Oryzias_latipes_hni
ENSOMEG00000013362	sf3a1	100	96.046	ENSORLG00015017411	sf3a1	100	96.046	Oryzias_latipes_hsok
ENSOMEG00000013362	sf3a1	99	83.871	ENSOGAG00000012931	SF3A1	100	83.019	Otolemur_garnettii
ENSOMEG00000013362	sf3a1	99	82.323	ENSOARG00000006849	SF3A1	100	81.509	Ovis_aries
ENSOMEG00000013362	sf3a1	99	83.097	ENSPPAG00000041790	SF3A1	100	81.887	Pan_paniscus
ENSOMEG00000013362	sf3a1	99	83.355	ENSPPRG00000004391	SF3A1	100	82.516	Panthera_pardus
ENSOMEG00000013362	sf3a1	98	83.333	ENSPTIG00000000844	SF3A1	100	83.592	Panthera_tigris_altaica
ENSOMEG00000013362	sf3a1	99	84.000	ENSPTRG00000014240	SF3A1	100	82.767	Pan_troglodytes
ENSOMEG00000013362	sf3a1	99	83.613	ENSPANG00000020772	SF3A1	100	82.767	Papio_anubis
ENSOMEG00000013362	sf3a1	79	90.110	ENSPSIG00000012803	SF3A1	99	90.110	Pelodiscus_sinensis
ENSOMEG00000013362	sf3a1	97	88.613	ENSPMGG00000023096	sf3a1	100	89.398	Periophthalmus_magnuspinnatus
ENSOMEG00000013362	sf3a1	97	84.605	ENSPEMG00000009494	Sf3a1	100	82.642	Peromyscus_maniculatus_bairdii
ENSOMEG00000013362	sf3a1	69	76.782	ENSPMAG00000007139	-	100	71.096	Petromyzon_marinus
ENSOMEG00000013362	sf3a1	97	83.508	ENSPCIG00000022692	SF3A1	100	82.368	Phascolarctos_cinereus
ENSOMEG00000013362	sf3a1	100	83.694	ENSPFOG00000016768	sf3a1	100	83.822	Poecilia_formosa
ENSOMEG00000013362	sf3a1	100	93.647	ENSPLAG00000017268	sf3a1	100	94.028	Poecilia_latipinna
ENSOMEG00000013362	sf3a1	96	93.835	ENSPMEG00000019811	sf3a1	100	93.835	Poecilia_mexicana
ENSOMEG00000013362	sf3a1	100	93.520	ENSPREG00000010347	sf3a1	100	93.774	Poecilia_reticulata
ENSOMEG00000013362	sf3a1	99	83.613	ENSPPYG00000011707	SF3A1	100	82.767	Pongo_abelii
ENSOMEG00000013362	sf3a1	58	84.298	ENSPCAG00000003266	SF3A1	57	84.298	Procavia_capensis
ENSOMEG00000013362	sf3a1	99	83.355	ENSPCOG00000026630	SF3A1	100	82.264	Propithecus_coquereli
ENSOMEG00000013362	sf3a1	95	83.668	ENSPVAG00000017719	SF3A1	94	83.936	Pteropus_vampyrus
ENSOMEG00000013362	sf3a1	100	93.376	ENSPNYG00000018706	sf3a1	100	93.376	Pundamilia_nyererei
ENSOMEG00000013362	sf3a1	99	87.245	ENSPNAG00000003721	sf3a1	99	87.372	Pygocentrus_nattereri
ENSOMEG00000013362	sf3a1	99	83.226	ENSRNOG00000005218	Sf3a1	99	82.323	Rattus_norvegicus
ENSOMEG00000013362	sf3a1	99	83.484	ENSRBIG00000032167	SF3A1	100	82.642	Rhinopithecus_bieti
ENSOMEG00000013362	sf3a1	99	83.484	ENSRROG00000044908	SF3A1	100	82.642	Rhinopithecus_roxellana
ENSOMEG00000013362	sf3a1	93	84.218	ENSSBOG00000021960	SF3A1	98	84.581	Saimiri_boliviensis_boliviensis
ENSOMEG00000013362	sf3a1	100	79.288	ENSSHAG00000003666	SF3A1	97	81.806	Sarcophilus_harrisii
ENSOMEG00000013362	sf3a1	100	88.608	ENSSFOG00015004579	sf3a1	100	89.241	Scleropages_formosus
ENSOMEG00000013362	sf3a1	100	89.809	ENSSMAG00000004275	sf3a1	100	90.064	Scophthalmus_maximus
ENSOMEG00000013362	sf3a1	100	93.885	ENSSDUG00000022219	sf3a1	100	93.885	Seriola_dumerili
ENSOMEG00000013362	sf3a1	100	93.885	ENSSLDG00000012642	sf3a1	100	93.885	Seriola_lalandi_dorsalis
ENSOMEG00000013362	sf3a1	98	81.008	ENSSARG00000005960	SF3A1	100	80.749	Sorex_araneus
ENSOMEG00000013362	sf3a1	97	84.375	ENSSPUG00000018863	SF3A1	100	83.146	Sphenodon_punctatus
ENSOMEG00000013362	sf3a1	100	94.013	ENSSPAG00000011856	sf3a1	100	94.013	Stegastes_partitus
ENSOMEG00000013362	sf3a1	99	83.226	ENSSSCG00000010002	SF3A1	100	82.642	Sus_scrofa
ENSOMEG00000013362	sf3a1	96	84.697	ENSTGUG00000010547	SF3A1	99	84.156	Taeniopygia_guttata
ENSOMEG00000013362	sf3a1	100	88.790	ENSTRUG00000006118	sf3a1	100	88.153	Takifugu_rubripes
ENSOMEG00000013362	sf3a1	58	88.806	ENSTNIG00000005713	sf3a1	88	88.258	Tetraodon_nigroviridis
ENSOMEG00000013362	sf3a1	99	77.161	ENSTBEG00000012771	SF3A1	100	76.478	Tupaia_belangeri
ENSOMEG00000013362	sf3a1	99	83.634	ENSTTRG00000001535	SF3A1	100	82.663	Tursiops_truncatus
ENSOMEG00000013362	sf3a1	99	81.496	ENSUAMG00000006750	SF3A1	99	81.749	Ursus_americanus
ENSOMEG00000013362	sf3a1	98	84.245	ENSUMAG00000016665	SF3A1	99	83.546	Ursus_maritimus
ENSOMEG00000013362	sf3a1	99	83.613	ENSVVUG00000003075	SF3A1	100	82.767	Vulpes_vulpes
ENSOMEG00000013362	sf3a1	100	78.392	ENSXETG00000016144	sf3a1	96	84.211	Xenopus_tropicalis
ENSOMEG00000013362	sf3a1	100	92.630	ENSXCOG00000015653	sf3a1	100	92.884	Xiphophorus_couchianus
ENSOMEG00000013362	sf3a1	100	92.884	ENSXMAG00000002753	sf3a1	100	93.139	Xiphophorus_maculatus