EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSOMEG00000013627 (Gene tree)
Gene ID
112163433
Gene Symbol
pabpc1b
Alias
-
Full Name
poly A binding protein%2C cytoplasmic 1 b
Gene Type
protein_coding
Species
Oryzias_melastigma
Status
putative
Strand
Minus strand
Length
9070 bases
Position
chrNVQA01000004.1:6988074-6997143
Accession
ZDB-GENE-050308-1
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSOMEP00000012231PABPPF00658.184.5e-3011
ENSOMEP00000012231RRM_5PF13893.64.6e-0712
ENSOMEP00000012231RRM_5PF13893.64.6e-0722
ENSOMEP00000012231RRM_1PF00076.221.4e-7614
ENSOMEP00000012231RRM_1PF00076.221.4e-7624
ENSOMEP00000012231RRM_1PF00076.221.4e-7634
ENSOMEP00000012231RRM_1PF00076.221.4e-7644
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSOMET00000019510-1551-ENSOMEP00000012231516 (aa)--
Gene Model
Click here to download ENSOMEG00000013627's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSOMEG00000013627's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSOMEG00000013627pabpc1b6934.940ENSOMEG00000005178ELAVL29134.940
ENSOMEG00000013627pabpc1b5736.986ENSOMEG00000002391celf46136.986
ENSOMEG00000013627pabpc1b6630.488ENSOMEG00000020931tia17130.488
ENSOMEG00000013627pabpc1b6631.538ENSOMEG00000014637-7331.538
ENSOMEG00000013627pabpc1b9771.910ENSOMEG00000010789pabpc1l8371.910
ENSOMEG00000013627pabpc1b9782.796ENSOMEG00000014410pabpc49868.858
ENSOMEG00000013627pabpc1b6934.940ENSOMEG00000023959elavl39034.940
ENSOMEG00000013627pabpc1b5836.986ENSOMEG00000007034celf3a6336.986
ENSOMEG00000013627pabpc1b10086.139ENSOMEG00000020219pabpc1a8886.139
ENSOMEG00000013627pabpc1b5737.662ENSOMEG00000019511celf5a5837.662
ENSOMEG00000013627pabpc1b7236.646ENSOMEG00000013694sf3b45336.646
ENSOMEG00000013627pabpc1b6834.091ENSOMEG00000009988elavl48133.333
ENSOMEG00000013627pabpc1b5836.986ENSOMEG00000009131celf3b6936.986
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSOMEG00000013627pabpc1b6776.667ENSG00000186288PABPC1L2A9876.667Homo_sapiens
ENSOMEG00000013627pabpc1b6776.667ENSG00000184388PABPC1L2B9876.667Homo_sapiens
ENSOMEG00000013627pabpc1b10081.465ENSAPOG00000015105pabpc1a9481.465Acanthochromis_polyacanthus
ENSOMEG00000013627pabpc1b10087.019ENSAPOG00000017776pabpc1b9584.211Acanthochromis_polyacanthus
ENSOMEG00000013627pabpc1b6776.667ENSAMEG00000019441-9876.667Ailuropoda_melanoleuca
ENSOMEG00000013627pabpc1b10086.779ENSACIG00000018366pabpc1b9973.913Amphilophus_citrinellus
ENSOMEG00000013627pabpc1b10081.693ENSACIG00000004685pabpc1a9981.693Amphilophus_citrinellus
ENSOMEG00000013627pabpc1b10081.465ENSAOCG00000011656pabpc1a9981.465Amphiprion_ocellaris
ENSOMEG00000013627pabpc1b10083.982ENSAOCG00000019839pabpc1b9983.982Amphiprion_ocellaris
ENSOMEG00000013627pabpc1b10081.465ENSAPEG00000006963pabpc1a9981.465Amphiprion_percula
ENSOMEG00000013627pabpc1b10083.982ENSAPEG00000010435pabpc1b9983.982Amphiprion_percula
ENSOMEG00000013627pabpc1b10081.007ENSATEG00000024852pabpc1a9981.007Anabas_testudineus
ENSOMEG00000013627pabpc1b10084.211ENSATEG00000012917pabpc1b9084.211Anabas_testudineus
ENSOMEG00000013627pabpc1b6776.667ENSANAG00000019429-9876.667Aotus_nancymaae
ENSOMEG00000013627pabpc1b6776.667ENSANAG00000019431-9876.667Aotus_nancymaae
ENSOMEG00000013627pabpc1b10084.586ENSACLG00000009399pabpc1a10084.586Astatotilapia_calliptera
ENSOMEG00000013627pabpc1b10083.295ENSACLG00000014335pabpc1b9986.331Astatotilapia_calliptera
ENSOMEG00000013627pabpc1b10083.982ENSAMXG00000008599pabpc1b9583.982Astyanax_mexicanus
ENSOMEG00000013627pabpc1b6776.667ENSBTAG00000052491-9876.667Bos_taurus
ENSOMEG00000013627pabpc1b6776.667ENSBTAG00000050902-9376.667Bos_taurus
ENSOMEG00000013627pabpc1b6776.667ENSCJAG00000041326-9876.667Callithrix_jacchus
ENSOMEG00000013627pabpc1b6776.667ENSCAFG00020002052-9476.667Canis_lupus_dingo
ENSOMEG00000013627pabpc1b6776.667ENSCHIG00000006283-9876.667Capra_hircus
ENSOMEG00000013627pabpc1b6776.667ENSCHIG00000011138-9876.667Capra_hircus
ENSOMEG00000013627pabpc1b6776.667ENSTSYG00000001775-9876.667Carlito_syrichta
ENSOMEG00000013627pabpc1b6776.667ENSCPOG00000009525-9876.667Cavia_porcellus
ENSOMEG00000013627pabpc1b6776.667ENSCCAG00000031524-9876.667Cebus_capucinus
ENSOMEG00000013627pabpc1b6776.667ENSCATG00000042826-9876.667Cercocebus_atys
ENSOMEG00000013627pabpc1b6776.667ENSCATG00000043125-9876.667Cercocebus_atys
ENSOMEG00000013627pabpc1b6774.444ENSCLAG00000017412-9874.444Chinchilla_lanigera
ENSOMEG00000013627pabpc1b6774.444ENSCLAG00000017409-9874.444Chinchilla_lanigera
ENSOMEG00000013627pabpc1b6776.667ENSCSAG00000000102-9876.667Chlorocebus_sabaeus
ENSOMEG00000013627pabpc1b6777.844ENSCGRG00001023387-9675.000Cricetulus_griseus_chok1gshd
ENSOMEG00000013627pabpc1b10082.609ENSCSEG00000015241-9482.609Cynoglossus_semilaevis
ENSOMEG00000013627pabpc1b9881.007ENSCSEG00000013324pabpc1a9981.007Cynoglossus_semilaevis
ENSOMEG00000013627pabpc1b10082.151ENSCVAG00000021872pabpc1a9482.151Cyprinodon_variegatus
ENSOMEG00000013627pabpc1b10083.220ENSCVAG00000005489pabpc1b9583.220Cyprinodon_variegatus
ENSOMEG00000013627pabpc1b10085.337ENSDARG00000017219pabpc1a9977.149Danio_rerio
ENSOMEG00000013627pabpc1b10084.439ENSDARG00000021140pabpc1b9991.379Danio_rerio
ENSOMEG00000013627pabpc1b6777.457ENSDNOG00000030926-9875.000Dasypus_novemcinctus
ENSOMEG00000013627pabpc1b6773.889ENSDORG00000011362-9873.889Dipodomys_ordii
ENSOMEG00000013627pabpc1b6776.667ENSEASG00005010399-9376.667Equus_asinus_asinus
ENSOMEG00000013627pabpc1b6776.667ENSECAG00000002620-9376.667Equus_caballus
ENSOMEG00000013627pabpc1b6772.222ENSEEUG00000008203-9872.222Erinaceus_europaeus
ENSOMEG00000013627pabpc1b9981.777ENSELUG00000003614pabpc1a9181.777Esox_lucius
ENSOMEG00000013627pabpc1b10082.579ENSELUG00000015062-9982.579Esox_lucius
ENSOMEG00000013627pabpc1b6757.488ENSELUG00000005389-9357.488Esox_lucius
ENSOMEG00000013627pabpc1b6776.667ENSFCAG00000039701-9876.667Felis_catus
ENSOMEG00000013627pabpc1b6776.667ENSFDAG00000005484-9876.667Fukomys_damarensis
ENSOMEG00000013627pabpc1b10081.922ENSFHEG00000018979pabpc1a9981.922Fundulus_heteroclitus
ENSOMEG00000013627pabpc1b10084.211ENSFHEG00000008186pabpc1b9984.211Fundulus_heteroclitus
ENSOMEG00000013627pabpc1b9980.549ENSGMOG00000013448pabpc1a8980.549Gadus_morhua
ENSOMEG00000013627pabpc1b10086.911ENSGMOG00000002448-8586.911Gadus_morhua
ENSOMEG00000013627pabpc1b10081.693ENSGAFG00000019750pabpc1a9081.693Gambusia_affinis
ENSOMEG00000013627pabpc1b10084.897ENSGAFG00000010193pabpc1b9984.897Gambusia_affinis
ENSOMEG00000013627pabpc1b10081.236ENSGACG00000003572pabpc1a9481.236Gasterosteus_aculeatus
ENSOMEG00000013627pabpc1b10085.577ENSGACG00000003771pabpc1b9982.380Gasterosteus_aculeatus
ENSOMEG00000013627pabpc1b6776.667ENSGGOG00000038606-9876.667Gorilla_gorilla
ENSOMEG00000013627pabpc1b6776.667ENSGGOG00000043933-9876.667Gorilla_gorilla
ENSOMEG00000013627pabpc1b10083.295ENSHBUG00000002075pabpc1b9986.331Haplochromis_burtoni
ENSOMEG00000013627pabpc1b10084.586ENSHBUG00000020487pabpc1a10084.586Haplochromis_burtoni
ENSOMEG00000013627pabpc1b6775.556ENSHGLG00000019762-9875.556Heterocephalus_glaber_female
ENSOMEG00000013627pabpc1b6775.556ENSHGLG00000019668-9875.556Heterocephalus_glaber_female
ENSOMEG00000013627pabpc1b6775.556ENSHGLG00100020854-9875.556Heterocephalus_glaber_male
ENSOMEG00000013627pabpc1b10081.236ENSHCOG00000013502pabpc1a9981.236Hippocampus_comes
ENSOMEG00000013627pabpc1b9281.250ENSHCOG00000003175pabpc1b9970.623Hippocampus_comes
ENSOMEG00000013627pabpc1b7060.446ENSIPUG00000021244-5360.446Ictalurus_punctatus
ENSOMEG00000013627pabpc1b8156.716ENSIPUG00000018724-7156.716Ictalurus_punctatus
ENSOMEG00000013627pabpc1b10076.910ENSIPUG00000010791-9977.083Ictalurus_punctatus
ENSOMEG00000013627pabpc1b10071.005ENSIPUG00000008848pabpc1a9977.311Ictalurus_punctatus
ENSOMEG00000013627pabpc1b6776.111ENSSTOG00000022096-9876.111Ictidomys_tridecemlineatus
ENSOMEG00000013627pabpc1b6776.111ENSSTOG00000026028-9876.111Ictidomys_tridecemlineatus
ENSOMEG00000013627pabpc1b6775.000ENSJJAG00000007037-9875.000Jaculus_jaculus
ENSOMEG00000013627pabpc1b10081.693ENSKMAG00000000605pabpc1a9481.693Kryptolebias_marmoratus
ENSOMEG00000013627pabpc1b9984.211ENSKMAG00000008049pabpc1b9984.211Kryptolebias_marmoratus
ENSOMEG00000013627pabpc1b10080.778ENSLBEG00000024002-9480.778Labrus_bergylta
ENSOMEG00000013627pabpc1b10083.524ENSLBEG00000026845pabpc1b9583.524Labrus_bergylta
ENSOMEG00000013627pabpc1b6776.111ENSLAFG00000023096-9876.111Loxodonta_africana
ENSOMEG00000013627pabpc1b6776.243ENSMFAG00000028878-9876.243Macaca_fascicularis
ENSOMEG00000013627pabpc1b6776.667ENSMMUG00000009740-9876.667Macaca_mulatta
ENSOMEG00000013627pabpc1b6776.667ENSMMUG00000039929-9876.667Macaca_mulatta
ENSOMEG00000013627pabpc1b6776.667ENSMMUG00000037681-9876.667Macaca_mulatta
ENSOMEG00000013627pabpc1b6776.667ENSMNEG00000037732-9876.667Macaca_nemestrina
ENSOMEG00000013627pabpc1b6776.667ENSMLEG00000027495-9876.667Mandrillus_leucophaeus
ENSOMEG00000013627pabpc1b10087.981ENSMAMG00000014610pabpc1b9188.221Mastacembelus_armatus
ENSOMEG00000013627pabpc1b10082.659ENSMAMG00000004502-10082.659Mastacembelus_armatus
ENSOMEG00000013627pabpc1b10083.295ENSMZEG00005026745pabpc1b9986.331Maylandia_zebra
ENSOMEG00000013627pabpc1b10084.586ENSMZEG00005025416pabpc1a10084.586Maylandia_zebra
ENSOMEG00000013627pabpc1b6776.667ENSMICG00000047642-9876.667Microcebus_murinus
ENSOMEG00000013627pabpc1b10084.200ENSMMOG00000018044pabpc1a10084.200Mola_mola
ENSOMEG00000013627pabpc1b10077.680ENSMMOG00000018009pabpc1b9977.329Mola_mola
ENSOMEG00000013627pabpc1b9875.789ENSMODG00000013156-9875.118Monodelphis_domestica
ENSOMEG00000013627pabpc1b9968.345ENSMODG00000015024-9968.345Monodelphis_domestica
ENSOMEG00000013627pabpc1b9883.019ENSMALG00000013020-9981.007Monopterus_albus
ENSOMEG00000013627pabpc1b10081.216ENSMALG00000006066pabpc1b9981.216Monopterus_albus
ENSOMEG00000013627pabpc1b6779.042ENSNGAG00000012688-9875.000Nannospalax_galili
ENSOMEG00000013627pabpc1b10083.066ENSNBRG00000013737pabpc1b9986.091Neolamprologus_brichardi
ENSOMEG00000013627pabpc1b10084.586ENSNBRG00000003068-10084.586Neolamprologus_brichardi
ENSOMEG00000013627pabpc1b6776.667ENSNLEG00000018128-9876.667Nomascus_leucogenys
ENSOMEG00000013627pabpc1b6776.111ENSODEG00000018540-9876.111Octodon_degus
ENSOMEG00000013627pabpc1b10083.524ENSONIG00000002717pabpc1b9286.571Oreochromis_niloticus
ENSOMEG00000013627pabpc1b10082.151ENSONIG00000006871-9382.151Oreochromis_niloticus
ENSOMEG00000013627pabpc1b6776.667ENSOCUG00000002565-9876.667Oryctolagus_cuniculus
ENSOMEG00000013627pabpc1b10088.010ENSORLG00000003008-9988.010Oryzias_latipes
ENSOMEG00000013627pabpc1b10086.139ENSORLG00000002691pabpc1a10079.159Oryzias_latipes
ENSOMEG00000013627pabpc1b10088.010ENSORLG00020022259-9988.010Oryzias_latipes_hni
ENSOMEG00000013627pabpc1b10086.139ENSORLG00020022398pabpc1a8886.139Oryzias_latipes_hni
ENSOMEG00000013627pabpc1b10086.139ENSORLG00015013633pabpc18886.139Oryzias_latipes_hsok
ENSOMEG00000013627pabpc1b10087.770ENSORLG00015010932-9987.770Oryzias_latipes_hsok
ENSOMEG00000013627pabpc1b6776.667ENSOGAG00000026047-9876.667Otolemur_garnettii
ENSOMEG00000013627pabpc1b6776.667ENSOGAG00000029513-9876.667Otolemur_garnettii
ENSOMEG00000013627pabpc1b6776.667ENSOARG00000005943-9876.667Ovis_aries
ENSOMEG00000013627pabpc1b6776.667ENSPPAG00000012920-9876.667Pan_paniscus
ENSOMEG00000013627pabpc1b6776.667ENSPPRG00000011809-9876.667Panthera_pardus
ENSOMEG00000013627pabpc1b6776.667ENSPPRG00000011804-9876.667Panthera_pardus
ENSOMEG00000013627pabpc1b6776.667ENSPTRG00000028252-9876.667Pan_troglodytes
ENSOMEG00000013627pabpc1b6776.667ENSPANG00000011549-9876.667Papio_anubis
ENSOMEG00000013627pabpc1b10084.211ENSPKIG00000005676pabpc1b9984.211Paramormyrops_kingsleyae
ENSOMEG00000013627pabpc1b8083.413ENSPMGG00000022487pabpc1a9083.413Periophthalmus_magnuspinnatus
ENSOMEG00000013627pabpc1b8084.173ENSPMGG00000023134-9684.173Periophthalmus_magnuspinnatus
ENSOMEG00000013627pabpc1b10084.897ENSPFOG00000005917pabpc1b9984.897Poecilia_formosa
ENSOMEG00000013627pabpc1b10081.465ENSPFOG00000010815pabpc1a9381.465Poecilia_formosa
ENSOMEG00000013627pabpc1b10081.465ENSPLAG00000004114pabpc1a9481.465Poecilia_latipinna
ENSOMEG00000013627pabpc1b10085.126ENSPLAG00000001388pabpc1b9985.126Poecilia_latipinna
ENSOMEG00000013627pabpc1b10081.465ENSPMEG00000001334pabpc1a9481.465Poecilia_mexicana
ENSOMEG00000013627pabpc1b10084.897ENSPMEG00000014399pabpc1b9984.897Poecilia_mexicana
ENSOMEG00000013627pabpc1b9986.139ENSPREG00000019595pabpc1a9294.340Poecilia_reticulata
ENSOMEG00000013627pabpc1b10085.126ENSPREG00000010911pabpc1b9985.126Poecilia_reticulata
ENSOMEG00000013627pabpc1b6776.667ENSPPYG00000020468-9876.667Pongo_abelii
ENSOMEG00000013627pabpc1b6776.667ENSPCAG00000005308-9876.667Procavia_capensis
ENSOMEG00000013627pabpc1b6776.111ENSPCOG00000026349-9876.111Propithecus_coquereli
ENSOMEG00000013627pabpc1b7377.654ENSPVAG00000016117-9877.654Pteropus_vampyrus
ENSOMEG00000013627pabpc1b10081.922ENSPNYG00000005192pabpc1a10074.611Pundamilia_nyererei
ENSOMEG00000013627pabpc1b10083.295ENSPNYG00000012578pabpc1b9986.331Pundamilia_nyererei
ENSOMEG00000013627pabpc1b10081.091ENSPNAG00000028408pabpc1a9981.091Pygocentrus_nattereri
ENSOMEG00000013627pabpc1b10083.982ENSPNAG00000024626pabpc1b9983.982Pygocentrus_nattereri
ENSOMEG00000013627pabpc1b6776.667ENSRBIG00000027173-9876.667Rhinopithecus_bieti
ENSOMEG00000013627pabpc1b9975.475ENSRBIG00000028738-9475.475Rhinopithecus_bieti
ENSOMEG00000013627pabpc1b6776.667ENSRROG00000017404-9876.667Rhinopithecus_roxellana
ENSOMEG00000013627pabpc1b9763.297ENSSHAG00000000511-10063.297Sarcophilus_harrisii
ENSOMEG00000013627pabpc1b7276.433ENSSFOG00015019668-7376.433Scleropages_formosus
ENSOMEG00000013627pabpc1b10082.380ENSSFOG00015006662pabpc1a9982.380Scleropages_formosus
ENSOMEG00000013627pabpc1b10083.524ENSSFOG00015002752-9983.524Scleropages_formosus
ENSOMEG00000013627pabpc1b10083.295ENSSMAG00000006869pabpc1b9983.295Scophthalmus_maximus
ENSOMEG00000013627pabpc1b9986.139ENSSMAG00000010803pabpc1a9480.778Scophthalmus_maximus
ENSOMEG00000013627pabpc1b10087.500ENSSDUG00000011965pabpc1b9584.668Seriola_dumerili
ENSOMEG00000013627pabpc1b10081.693ENSSDUG00000006675pabpc1a9081.693Seriola_dumerili
ENSOMEG00000013627pabpc1b10081.693ENSSLDG00000011661pabpc1a9081.693Seriola_lalandi_dorsalis
ENSOMEG00000013627pabpc1b10083.710ENSSLDG00000014156pabpc1b9683.710Seriola_lalandi_dorsalis
ENSOMEG00000013627pabpc1b10081.236ENSSPAG00000014453-9981.236Stegastes_partitus
ENSOMEG00000013627pabpc1b10084.668ENSSPAG00000019265pabpc1b9982.098Stegastes_partitus
ENSOMEG00000013627pabpc1b6776.667ENSSSCG00000036336-9876.667Sus_scrofa
ENSOMEG00000013627pabpc1b6776.667ENSSSCG00000032167-9876.667Sus_scrofa
ENSOMEG00000013627pabpc1b9986.058ENSTRUG00000003767-9484.223Takifugu_rubripes
ENSOMEG00000013627pabpc1b10081.693ENSTRUG00000011577-9981.693Takifugu_rubripes
ENSOMEG00000013627pabpc1b10082.287ENSTNIG00000009153pabpc1b9182.287Tetraodon_nigroviridis
ENSOMEG00000013627pabpc1b9980.787ENSTNIG00000013307pabpc1a9374.274Tetraodon_nigroviridis
ENSOMEG00000013627pabpc1b6776.667ENSTTRG00000013181-9876.667Tursiops_truncatus
ENSOMEG00000013627pabpc1b6776.667ENSUAMG00000008089-9876.667Ursus_americanus
ENSOMEG00000013627pabpc1b6776.667ENSUMAG00000003364-9876.667Ursus_maritimus
ENSOMEG00000013627pabpc1b9750.346ENSUMAG00000023926-8864.035Ursus_maritimus
ENSOMEG00000013627pabpc1b6776.111ENSVVUG00000015892-9576.111Vulpes_vulpes
ENSOMEG00000013627pabpc1b9645.291ENSXETG00000015439-9645.291Xenopus_tropicalis
ENSOMEG00000013627pabpc1b10073.310ENSXCOG00000017066pabpc1a9974.177Xiphophorus_couchianus
ENSOMEG00000013627pabpc1b10087.736ENSXCOG00000019901pabpc1b9387.736Xiphophorus_couchianus
ENSOMEG00000013627pabpc1b10081.465ENSXMAG00000002555pabpc1a9481.465Xiphophorus_maculatus
ENSOMEG00000013627pabpc1b10085.126ENSXMAG00000003753pabpc1b9985.126Xiphophorus_maculatus

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