EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSOMEG00000013694 (Gene tree)
Gene ID: 112159388
Gene Symbol: sf3b4
Alias: -
Full Name: splicing factor 3b subunit 4
Gene Type: protein_coding
Species: Oryzias_melastigma
Status: putative
Strand: Minus strand
Length: 4481 bases
Position: chrNVQA01000004.1:6967647-6972127
Accession: 112159388
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOMEP00000012327	RRM_1	PF00076.22	3.1e-39	1	2
ENSOMEP00000012327	RRM_1	PF00076.22	3.1e-39	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOMET00000019652	-	1446	XM_024293438	ENSOMEP00000012327	397 (aa)	XP_024149206	UPI000CF7E15E

Gene Model

Click here to download ENSOMEG00000013694's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOMEG00000013694's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSOMEG00000013694	sf3b4	53	38.372	ENSOMEG00000016484	tia1l	80	33.838
ENSOMEG00000013694	sf3b4	53	36.646	ENSOMEG00000013627	pabpc1b	72	36.646

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOMEG00000013694	sf3b4	57	97.807	ENSG00000143368	SF3B4	99	96.296	Homo_sapiens
ENSOMEG00000013694	sf3b4	58	98.696	ENSAPOG00000017647	sf3b4	58	98.276	Acanthochromis_polyacanthus
ENSOMEG00000013694	sf3b4	58	97.835	ENSACIG00000018455	sf3b4	68	97.414	Amphilophus_citrinellus
ENSOMEG00000013694	sf3b4	57	99.558	ENSAOCG00000019801	sf3b4	58	97.845	Amphiprion_ocellaris
ENSOMEG00000013694	sf3b4	57	99.558	ENSAPEG00000010365	sf3b4	58	97.845	Amphiprion_percula
ENSOMEG00000013694	sf3b4	58	98.261	ENSATEG00000012844	sf3b4	58	97.414	Anabas_testudineus
ENSOMEG00000013694	sf3b4	54	100.000	ENSACAG00000010019	SF3B4	56	98.276	Anolis_carolinensis
ENSOMEG00000013694	sf3b4	60	97.890	ENSACLG00000014260	sf3b4	58	98.276	Astatotilapia_calliptera
ENSOMEG00000013694	sf3b4	58	98.696	ENSAMXG00000008282	sf3b4	58	98.276	Astyanax_mexicanus
ENSOMEG00000013694	sf3b4	75	61.392	WBGene00004723	sap-49	55	81.690	Caenorhabditis_elegans
ENSOMEG00000013694	sf3b4	73	59.223	ENSCHIG00000006654	-	50	74.627	Capra_hircus
ENSOMEG00000013694	sf3b4	58	95.082	ENSCAPG00000006451	SF3B4	50	96.045	Cavia_aperea
ENSOMEG00000013694	sf3b4	75	70.440	ENSCCAG00000019823	-	50	87.560	Cebus_capucinus
ENSOMEG00000013694	sf3b4	57	96.930	ENSCCAG00000021751	-	52	96.121	Cebus_capucinus
ENSOMEG00000013694	sf3b4	54	100.000	ENSCPBG00000008041	SF3B4	56	97.845	Chrysemys_picta_bellii
ENSOMEG00000013694	sf3b4	54	90.654	ENSCING00000002337	-	58	90.654	Ciona_intestinalis
ENSOMEG00000013694	sf3b4	52	91.429	ENSCSAVG00000007809	-	89	89.881	Ciona_savignyi
ENSOMEG00000013694	sf3b4	75	93.289	ENSCSEG00000015258	sf3b4	56	96.654	Cynoglossus_semilaevis
ENSOMEG00000013694	sf3b4	68	92.937	ENSCVAG00000005536	sf3b4	59	95.259	Cyprinodon_variegatus
ENSOMEG00000013694	sf3b4	58	98.696	ENSDARG00000018574	sf3b4	58	97.845	Danio_rerio
ENSOMEG00000013694	sf3b4	94	65.979	ENSDNOG00000037231	-	50	87.245	Dasypus_novemcinctus
ENSOMEG00000013694	sf3b4	58	99.130	ENSELUG00000012876	sf3b4	58	98.707	Esox_lucius
ENSOMEG00000013694	sf3b4	58	97.826	ENSGMOG00000002519	sf3b4	67	97.826	Gadus_morhua
ENSOMEG00000013694	sf3b4	54	100.000	ENSGALG00000013352	SF3B4	56	97.845	Gallus_gallus
ENSOMEG00000013694	sf3b4	68	95.167	ENSGAFG00000010181	sf3b4	59	98.276	Gambusia_affinis
ENSOMEG00000013694	sf3b4	57	99.558	ENSGACG00000003819	sf3b4	59	97.845	Gasterosteus_aculeatus
ENSOMEG00000013694	sf3b4	80	69.255	ENSGGOG00000038845	-	55	88.318	Gorilla_gorilla
ENSOMEG00000013694	sf3b4	60	97.890	ENSHBUG00000002028	sf3b4	58	98.276	Haplochromis_burtoni
ENSOMEG00000013694	sf3b4	57	97.807	ENSHGLG00100008533	SF3B4	55	96.983	Heterocephalus_glaber_male
ENSOMEG00000013694	sf3b4	57	97.357	ENSHCOG00000003014	sf3b4	57	96.943	Hippocampus_comes
ENSOMEG00000013694	sf3b4	58	98.696	ENSIPUG00000012242	Sf3b4	58	97.845	Ictalurus_punctatus
ENSOMEG00000013694	sf3b4	56	71.111	ENSJJAG00000022500	Sf3b4	56	70.504	Jaculus_jaculus
ENSOMEG00000013694	sf3b4	68	95.941	ENSKMAG00000008154	sf3b4	59	98.707	Kryptolebias_marmoratus
ENSOMEG00000013694	sf3b4	74	86.689	ENSLBEG00000026818	sf3b4	73	87.205	Labrus_bergylta
ENSOMEG00000013694	sf3b4	57	97.368	ENSLACG00000004436	SF3B4	64	96.121	Latimeria_chalumnae
ENSOMEG00000013694	sf3b4	58	98.276	ENSLOCG00000009048	sf3b4	55	98.276	Lepisosteus_oculatus
ENSOMEG00000013694	sf3b4	89	63.788	ENSMFAG00000039067	-	59	78.539	Macaca_fascicularis
ENSOMEG00000013694	sf3b4	89	63.231	ENSMNEG00000031526	-	59	78.082	Macaca_nemestrina
ENSOMEG00000013694	sf3b4	60	98.312	ENSMAMG00000014692	sf3b4	58	98.276	Mastacembelus_armatus
ENSOMEG00000013694	sf3b4	60	97.890	ENSMZEG00005026741	sf3b4	58	98.276	Maylandia_zebra
ENSOMEG00000013694	sf3b4	54	100.000	ENSMGAG00000000653	SF3B4	56	97.845	Meleagris_gallopavo
ENSOMEG00000013694	sf3b4	58	98.696	ENSMMOG00000018032	sf3b4	59	98.276	Mola_mola
ENSOMEG00000013694	sf3b4	57	99.115	ENSMALG00000006174	sf3b4	58	97.414	Monopterus_albus
ENSOMEG00000013694	sf3b4	60	98.312	ENSNBRG00000013865	sf3b4	58	98.707	Neolamprologus_brichardi
ENSOMEG00000013694	sf3b4	99	48.611	ENSNLEG00000009693	-	99	48.611	Nomascus_leucogenys
ENSOMEG00000013694	sf3b4	90	67.380	ENSNLEG00000000537	-	59	87.500	Nomascus_leucogenys
ENSOMEG00000013694	sf3b4	91	57.256	ENSODEG00000008916	-	55	76.415	Octodon_degus
ENSOMEG00000013694	sf3b4	60	97.468	ENSONIG00000002730	sf3b4	58	98.276	Oreochromis_niloticus
ENSOMEG00000013694	sf3b4	100	95.750	ENSORLG00000003062	sf3b4	100	95.750	Oryzias_latipes
ENSOMEG00000013694	sf3b4	100	95.750	ENSORLG00020000687	sf3b4	100	95.750	Oryzias_latipes_hni
ENSOMEG00000013694	sf3b4	100	96.000	ENSORLG00015010989	sf3b4	100	96.000	Oryzias_latipes_hsok
ENSOMEG00000013694	sf3b4	77	68.506	ENSOARG00000007368	-	55	80.973	Ovis_aries
ENSOMEG00000013694	sf3b4	77	75.472	ENSPPAG00000030024	-	57	86.638	Pan_paniscus
ENSOMEG00000013694	sf3b4	77	77.049	ENSPTRG00000049727	-	58	87.069	Pan_troglodytes
ENSOMEG00000013694	sf3b4	59	98.718	ENSPKIG00000020669	sf3b4	62	99.138	Paramormyrops_kingsleyae
ENSOMEG00000013694	sf3b4	54	95.305	ENSPMAG00000007842	-	50	95.327	Petromyzon_marinus
ENSOMEG00000013694	sf3b4	68	94.815	ENSPFOG00000005754	sf3b4	59	96.983	Poecilia_formosa
ENSOMEG00000013694	sf3b4	68	94.815	ENSPLAG00000001401	sf3b4	64	96.983	Poecilia_latipinna
ENSOMEG00000013694	sf3b4	68	94.815	ENSPREG00000011076	sf3b4	58	97.414	Poecilia_reticulata
ENSOMEG00000013694	sf3b4	52	96.635	ENSPCAG00000000392	SF3B4	50	96.635	Procavia_capensis
ENSOMEG00000013694	sf3b4	60	97.890	ENSPNYG00000012700	sf3b4	58	98.276	Pundamilia_nyererei
ENSOMEG00000013694	sf3b4	58	98.261	ENSPNAG00000000686	sf3b4	59	98.276	Pygocentrus_nattereri
ENSOMEG00000013694	sf3b4	93	59.326	ENSRROG00000028213	-	57	73.661	Rhinopithecus_roxellana
ENSOMEG00000013694	sf3b4	77	64.577	ENSSBOG00000025174	-	50	75.431	Saimiri_boliviensis_boliviensis
ENSOMEG00000013694	sf3b4	60	98.312	ENSSFOG00015008864	sf3b4	57	99.138	Scleropages_formosus
ENSOMEG00000013694	sf3b4	75	88.704	ENSSMAG00000006837	sf3b4	58	98.276	Scophthalmus_maximus
ENSOMEG00000013694	sf3b4	68	93.680	ENSSDUG00000012064	sf3b4	58	98.707	Seriola_dumerili
ENSOMEG00000013694	sf3b4	68	93.309	ENSSLDG00000014226	sf3b4	58	98.276	Seriola_lalandi_dorsalis
ENSOMEG00000013694	sf3b4	58	98.696	ENSSPAG00000019219	sf3b4	58	98.276	Stegastes_partitus
ENSOMEG00000013694	sf3b4	79	56.646	ENSSSCG00000039440	-	56	63.362	Sus_scrofa
ENSOMEG00000013694	sf3b4	59	97.034	ENSTGUG00000004470	SF3B4	91	97.845	Taeniopygia_guttata
ENSOMEG00000013694	sf3b4	80	89.308	ENSTRUG00000004516	sf3b4	58	96.983	Takifugu_rubripes
ENSOMEG00000013694	sf3b4	58	98.261	ENSTNIG00000009156	sf3b4	59	97.845	Tetraodon_nigroviridis
ENSOMEG00000013694	sf3b4	57	97.807	ENSVVUG00000007732	-	59	96.983	Vulpes_vulpes
ENSOMEG00000013694	sf3b4	76	78.808	ENSXETG00000011038	sf3b4	58	94.570	Xenopus_tropicalis
ENSOMEG00000013694	sf3b4	68	93.333	ENSXCOG00000019895	sf3b4	59	98.276	Xiphophorus_couchianus
ENSOMEG00000013694	sf3b4	68	93.309	ENSXMAG00000003772	sf3b4	59	98.276	Xiphophorus_maculatus