EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSOMEG00000014425 (Gene tree)
Gene ID: 112155026
Gene Symbol: upf3a
Alias: -
Full Name: regulator of nonsense transcripts 3A-like
Gene Type: protein_coding
Species: Oryzias_melastigma
Status: putative
Strand: Minus strand
Length: 7878 bases
Position: chrNVQA01000019.1:20024358-20032235
Accession: 112155026
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOMEP00000030273	Smg4_UPF3	PF03467.15	2e-53	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOMET00000020506	-	4238	-	ENSOMEP00000030273	462 (aa)	XP_024142157	UPI000CF7D61B

Gene Model

Click here to download ENSOMEG00000014425's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOMEG00000014425's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSOMEG00000014425	upf3a	58	52.747	ENSOMEG00000014736	upf3b	92	48.741

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOMEG00000014425	upf3a	83	58.586	ENSG00000169062	UPF3A	90	55.581	Homo_sapiens
ENSOMEG00000014425	upf3a	83	53.623	ENSAPOG00000012775	upf3b	88	51.471	Acanthochromis_polyacanthus
ENSOMEG00000014425	upf3a	100	89.633	ENSAPOG00000013484	upf3a	100	89.633	Acanthochromis_polyacanthus
ENSOMEG00000014425	upf3a	89	55.300	ENSAMEG00000004259	UPF3A	95	55.300	Ailuropoda_melanoleuca
ENSOMEG00000014425	upf3a	98	85.294	ENSACIG00000020468	upf3a	99	85.294	Amphilophus_citrinellus
ENSOMEG00000014425	upf3a	60	62.245	ENSAOCG00000000706	upf3b	88	52.174	Amphiprion_ocellaris
ENSOMEG00000014425	upf3a	100	89.417	ENSAOCG00000020784	upf3a	100	89.417	Amphiprion_ocellaris
ENSOMEG00000014425	upf3a	64	62.295	ENSAPEG00000005545	upf3b	93	49.306	Amphiprion_percula
ENSOMEG00000014425	upf3a	100	89.417	ENSAPEG00000003519	upf3a	100	89.417	Amphiprion_percula
ENSOMEG00000014425	upf3a	100	88.337	ENSATEG00000005843	upf3a	100	88.337	Anabas_testudineus
ENSOMEG00000014425	upf3a	89	52.466	ENSATEG00000018742	upf3b	92	50.227	Anabas_testudineus
ENSOMEG00000014425	upf3a	84	47.031	ENSACAG00000003625	UPF3B	89	50.926	Anolis_carolinensis
ENSOMEG00000014425	upf3a	86	63.592	ENSACAG00000001540	UPF3A	98	63.592	Anolis_carolinensis
ENSOMEG00000014425	upf3a	82	46.750	ENSANAG00000025598	-	62	69.565	Aotus_nancymaae
ENSOMEG00000014425	upf3a	91	51.940	ENSANAG00000021713	UPF3A	96	52.155	Aotus_nancymaae
ENSOMEG00000014425	upf3a	82	46.667	ENSANAG00000021894	-	77	71.515	Aotus_nancymaae
ENSOMEG00000014425	upf3a	82	44.878	ENSACLG00000001649	upf3b	97	46.970	Astatotilapia_calliptera
ENSOMEG00000014425	upf3a	100	85.863	ENSACLG00000026274	upf3a	100	85.863	Astatotilapia_calliptera
ENSOMEG00000014425	upf3a	99	78.788	ENSAMXG00000002608	upf3a	100	78.788	Astyanax_mexicanus
ENSOMEG00000014425	upf3a	53	31.418	WBGene00004882	smg-4	51	33.898	Caenorhabditis_elegans
ENSOMEG00000014425	upf3a	82	46.569	ENSCJAG00000004975	UPF3B	77	70.909	Callithrix_jacchus
ENSOMEG00000014425	upf3a	93	53.084	ENSCJAG00000019102	UPF3A	93	53.304	Callithrix_jacchus
ENSOMEG00000014425	upf3a	89	55.963	ENSCAFG00000006504	UPF3A	93	55.102	Canis_familiaris
ENSOMEG00000014425	upf3a	89	55.963	ENSCAFG00020014268	UPF3A	91	55.102	Canis_lupus_dingo
ENSOMEG00000014425	upf3a	85	46.845	ENSCAFG00020004074	UPF3B	69	68.605	Canis_lupus_dingo
ENSOMEG00000014425	upf3a	83	56.203	ENSCHIG00000008682	UPF3A	85	53.846	Capra_hircus
ENSOMEG00000014425	upf3a	82	46.402	ENSTSYG00000014690	UPF3B	76	66.471	Carlito_syrichta
ENSOMEG00000014425	upf3a	75	53.495	ENSTSYG00000001918	UPF3A	99	53.351	Carlito_syrichta
ENSOMEG00000014425	upf3a	70	58.209	ENSCPOG00000006824	UPF3A	78	58.209	Cavia_porcellus
ENSOMEG00000014425	upf3a	89	54.920	ENSCCAG00000018406	UPF3A	91	55.353	Cebus_capucinus
ENSOMEG00000014425	upf3a	81	39.481	ENSCCAG00000029813	-	56	57.988	Cebus_capucinus
ENSOMEG00000014425	upf3a	89	57.042	ENSCATG00000029733	UPF3A	91	57.277	Cercocebus_atys
ENSOMEG00000014425	upf3a	89	56.164	ENSCSAG00000017388	UPF3A	91	56.393	Chlorocebus_sabaeus
ENSOMEG00000014425	upf3a	82	57.895	ENSCGRG00001017387	Upf3a	87	56.836	Cricetulus_griseus_chok1gshd
ENSOMEG00000014425	upf3a	82	57.895	ENSCGRG00000001468	Upf3a	87	56.836	Cricetulus_griseus_crigri
ENSOMEG00000014425	upf3a	99	85.900	ENSCSEG00000005106	upf3a	99	85.900	Cynoglossus_semilaevis
ENSOMEG00000014425	upf3a	81	55.025	ENSCSEG00000002046	upf3b	85	51.084	Cynoglossus_semilaevis
ENSOMEG00000014425	upf3a	82	45.074	ENSCVAG00000005030	upf3b	93	48.649	Cyprinodon_variegatus
ENSOMEG00000014425	upf3a	100	82.328	ENSCVAG00000022333	upf3a	100	82.328	Cyprinodon_variegatus
ENSOMEG00000014425	upf3a	82	51.429	ENSDARG00000000489	upf3b	87	52.771	Danio_rerio
ENSOMEG00000014425	upf3a	99	77.754	ENSDARG00000069297	upf3a	100	77.754	Danio_rerio
ENSOMEG00000014425	upf3a	81	60.202	ENSDNOG00000034391	UPF3A	89	60.804	Dasypus_novemcinctus
ENSOMEG00000014425	upf3a	90	51.535	ENSETEG00000010110	UPF3A	94	52.193	Echinops_telfairi
ENSOMEG00000014425	upf3a	88	57.243	ENSEASG00005021884	UPF3A	88	57.243	Equus_asinus_asinus
ENSOMEG00000014425	upf3a	84	48.910	ENSEASG00005012919	UPF3B	62	72.464	Equus_asinus_asinus
ENSOMEG00000014425	upf3a	84	48.910	ENSECAG00000016947	UPF3B	62	65.714	Equus_caballus
ENSOMEG00000014425	upf3a	88	57.944	ENSECAG00000017141	UPF3A	88	56.979	Equus_caballus
ENSOMEG00000014425	upf3a	99	79.318	ENSELUG00000011050	upf3a	98	80.659	Esox_lucius
ENSOMEG00000014425	upf3a	88	57.639	ENSFCAG00000014602	UPF3A	92	56.689	Felis_catus
ENSOMEG00000014425	upf3a	82	53.285	ENSFHEG00000017895	upf3b	89	51.429	Fundulus_heteroclitus
ENSOMEG00000014425	upf3a	69	77.301	ENSGMOG00000019615	upf3a	99	77.744	Gadus_morhua
ENSOMEG00000014425	upf3a	100	85.129	ENSGAFG00000021170	upf3a	100	85.129	Gambusia_affinis
ENSOMEG00000014425	upf3a	82	47.487	ENSGAFG00000000829	upf3b	88	51.961	Gambusia_affinis
ENSOMEG00000014425	upf3a	69	80.312	ENSGACG00000001972	upf3a	99	80.564	Gasterosteus_aculeatus
ENSOMEG00000014425	upf3a	80	51.724	ENSGACG00000017435	upf3b	61	71.176	Gasterosteus_aculeatus
ENSOMEG00000014425	upf3a	83	45.433	ENSGAGG00000001219	UPF3B	87	51.816	Gopherus_agassizii
ENSOMEG00000014425	upf3a	81	46.950	ENSGGOG00000041219	-	85	48.571	Gorilla_gorilla
ENSOMEG00000014425	upf3a	81	46.950	ENSGGOG00000043074	-	80	48.579	Gorilla_gorilla
ENSOMEG00000014425	upf3a	88	56.295	ENSGGOG00000015428	UPF3A	90	56.295	Gorilla_gorilla
ENSOMEG00000014425	upf3a	100	88.985	ENSHBUG00000011325	upf3a	99	89.177	Haplochromis_burtoni
ENSOMEG00000014425	upf3a	84	42.584	ENSHBUG00000017393	upf3b	97	46.970	Haplochromis_burtoni
ENSOMEG00000014425	upf3a	75	55.742	ENSHGLG00000001544	UPF3A	85	55.742	Heterocephalus_glaber_female
ENSOMEG00000014425	upf3a	75	55.742	ENSHGLG00100013244	UPF3A	85	55.742	Heterocephalus_glaber_male
ENSOMEG00000014425	upf3a	95	77.201	ENSHCOG00000013985	upf3a	95	77.652	Hippocampus_comes
ENSOMEG00000014425	upf3a	99	76.242	ENSIPUG00000023450	upf3a	100	76.242	Ictalurus_punctatus
ENSOMEG00000014425	upf3a	100	88.147	ENSKMAG00000004381	upf3a	100	88.147	Kryptolebias_marmoratus
ENSOMEG00000014425	upf3a	88	50.000	ENSKMAG00000020300	upf3b	92	49.203	Kryptolebias_marmoratus
ENSOMEG00000014425	upf3a	98	83.077	ENSLBEG00000021570	upf3a	100	83.151	Labrus_bergylta
ENSOMEG00000014425	upf3a	60	42.229	ENSLACG00000006645	UPF3A	66	87.719	Latimeria_chalumnae
ENSOMEG00000014425	upf3a	97	74.617	ENSLOCG00000002665	upf3a	98	74.617	Lepisosteus_oculatus
ENSOMEG00000014425	upf3a	89	55.425	ENSMFAG00000045016	UPF3A	81	58.793	Macaca_fascicularis
ENSOMEG00000014425	upf3a	87	57.494	ENSMMUG00000007449	UPF3A	89	57.524	Macaca_mulatta
ENSOMEG00000014425	upf3a	82	60.105	ENSMNEG00000036402	UPF3A	79	60.105	Macaca_nemestrina
ENSOMEG00000014425	upf3a	82	59.580	ENSMLEG00000014726	UPF3A	89	59.580	Mandrillus_leucophaeus
ENSOMEG00000014425	upf3a	100	84.342	ENSMAMG00000018364	upf3a	100	84.342	Mastacembelus_armatus
ENSOMEG00000014425	upf3a	82	44.878	ENSMZEG00005007871	upf3b	97	46.970	Maylandia_zebra
ENSOMEG00000014425	upf3a	100	85.863	ENSMZEG00005021571	upf3a	100	85.863	Maylandia_zebra
ENSOMEG00000014425	upf3a	85	63.260	ENSMGAG00000014837	UPF3A	99	62.560	Meleagris_gallopavo
ENSOMEG00000014425	upf3a	55	71.765	ENSMOCG00000000550	Upf3a	50	74.576	Microtus_ochrogaster
ENSOMEG00000014425	upf3a	100	83.090	ENSMMOG00000019751	upf3a	100	83.090	Mola_mola
ENSOMEG00000014425	upf3a	83	65.099	ENSMODG00000003159	UPF3A	93	65.679	Monodelphis_domestica
ENSOMEG00000014425	upf3a	50	57.203	ENSMALG00000008042	upf3b	96	47.312	Monopterus_albus
ENSOMEG00000014425	upf3a	80	58.871	MGP_CAROLIEiJ_G0030848	Upf3a	87	55.733	Mus_caroli
ENSOMEG00000014425	upf3a	80	58.333	ENSMUSG00000038398	Upf3a	87	56.533	Mus_musculus
ENSOMEG00000014425	upf3a	80	59.409	MGP_PahariEiJ_G0021311	Upf3a	87	59.409	Mus_pahari
ENSOMEG00000014425	upf3a	80	58.065	MGP_SPRETEiJ_G0031958	Upf3a	87	56.800	Mus_spretus
ENSOMEG00000014425	upf3a	89	55.632	ENSMPUG00000009139	UPF3A	88	56.279	Mustela_putorius_furo
ENSOMEG00000014425	upf3a	81	60.969	ENSMLUG00000015905	UPF3A	92	60.969	Myotis_lucifugus
ENSOMEG00000014425	upf3a	84	55.250	ENSNGAG00000019314	Upf3a	87	56.952	Nannospalax_galili
ENSOMEG00000014425	upf3a	100	88.769	ENSNBRG00000000828	upf3a	100	88.769	Neolamprologus_brichardi
ENSOMEG00000014425	upf3a	89	56.075	ENSNLEG00000007563	UPF3A	91	56.075	Nomascus_leucogenys
ENSOMEG00000014425	upf3a	100	88.627	ENSONIG00000006817	upf3a	100	88.627	Oreochromis_niloticus
ENSOMEG00000014425	upf3a	77	55.645	ENSOANG00000006985	-	95	55.645	Ornithorhynchus_anatinus
ENSOMEG00000014425	upf3a	100	94.421	ENSORLG00000010911	upf3a	100	94.421	Oryzias_latipes
ENSOMEG00000014425	upf3a	100	94.156	ENSORLG00020014317	upf3a	100	94.156	Oryzias_latipes_hni
ENSOMEG00000014425	upf3a	82	42.927	ENSORLG00020003758	upf3b	57	62.857	Oryzias_latipes_hni
ENSOMEG00000014425	upf3a	100	95.022	ENSORLG00015017339	upf3a	58	95.022	Oryzias_latipes_hsok
ENSOMEG00000014425	upf3a	79	58.140	ENSOGAG00000004788	UPF3A	92	59.055	Otolemur_garnettii
ENSOMEG00000014425	upf3a	84	56.858	ENSOARG00000009004	UPF3A	84	56.858	Ovis_aries
ENSOMEG00000014425	upf3a	88	55.349	ENSPPAG00000042267	UPF3A	90	55.581	Pan_paniscus
ENSOMEG00000014425	upf3a	88	57.407	ENSPPRG00000025062	UPF3A	92	56.463	Panthera_pardus
ENSOMEG00000014425	upf3a	81	42.597	ENSPTRG00000051640	-	85	45.714	Pan_troglodytes
ENSOMEG00000014425	upf3a	88	55.349	ENSPTRG00000006073	UPF3A	90	55.581	Pan_troglodytes
ENSOMEG00000014425	upf3a	81	46.494	ENSPTRG00000041187	-	86	46.809	Pan_troglodytes
ENSOMEG00000014425	upf3a	81	46.011	ENSPTRG00000041835	-	85	42.819	Pan_troglodytes
ENSOMEG00000014425	upf3a	89	57.746	ENSPANG00000004346	UPF3A	91	57.746	Papio_anubis
ENSOMEG00000014425	upf3a	97	68.958	ENSPKIG00000004422	upf3a	98	68.958	Paramormyrops_kingsleyae
ENSOMEG00000014425	upf3a	83	50.117	ENSPKIG00000019226	upf3b	75	76.068	Paramormyrops_kingsleyae
ENSOMEG00000014425	upf3a	83	65.750	ENSPSIG00000007468	UPF3A	96	65.750	Pelodiscus_sinensis
ENSOMEG00000014425	upf3a	100	80.412	ENSPMGG00000012696	upf3a	100	80.412	Periophthalmus_magnuspinnatus
ENSOMEG00000014425	upf3a	80	59.151	ENSPEMG00000019968	-	87	59.569	Peromyscus_maniculatus_bairdii
ENSOMEG00000014425	upf3a	75	66.667	ENSPCIG00000019590	-	90	66.990	Phascolarctos_cinereus
ENSOMEG00000014425	upf3a	100	85.745	ENSPFOG00000013222	upf3a	100	85.745	Poecilia_formosa
ENSOMEG00000014425	upf3a	82	45.209	ENSPLAG00000005105	upf3b	92	50.459	Poecilia_latipinna
ENSOMEG00000014425	upf3a	82	45.209	ENSPLAG00000019922	upf3b	92	50.459	Poecilia_latipinna
ENSOMEG00000014425	upf3a	98	84.245	ENSPLAG00000011960	upf3a	100	84.245	Poecilia_latipinna
ENSOMEG00000014425	upf3a	100	81.781	ENSPMEG00000000836	upf3a	100	81.781	Poecilia_mexicana
ENSOMEG00000014425	upf3a	82	47.103	ENSPMEG00000023532	upf3b	92	50.229	Poecilia_mexicana
ENSOMEG00000014425	upf3a	89	55.046	ENSPPYG00000005536	UPF3A	91	55.275	Pongo_abelii
ENSOMEG00000014425	upf3a	85	46.318	ENSPCOG00000021960	UPF3B	51	72.393	Propithecus_coquereli
ENSOMEG00000014425	upf3a	89	54.102	ENSPVAG00000005656	UPF3A	93	53.898	Pteropus_vampyrus
ENSOMEG00000014425	upf3a	100	85.863	ENSPNYG00000011289	upf3a	100	85.863	Pundamilia_nyererei
ENSOMEG00000014425	upf3a	82	45.185	ENSPNYG00000009846	upf3b	97	47.732	Pundamilia_nyererei
ENSOMEG00000014425	upf3a	82	53.237	ENSPNAG00000021528	upf3b	61	67.895	Pygocentrus_nattereri
ENSOMEG00000014425	upf3a	99	77.489	ENSPNAG00000019532	upf3a	100	77.489	Pygocentrus_nattereri
ENSOMEG00000014425	upf3a	77	59.831	ENSRNOG00000017397	Upf3a	86	59.831	Rattus_norvegicus
ENSOMEG00000014425	upf3a	84	59.137	ENSRBIG00000034007	UPF3A	89	58.942	Rhinopithecus_bieti
ENSOMEG00000014425	upf3a	81	59.737	ENSRROG00000012212	UPF3A	81	59.737	Rhinopithecus_roxellana
ENSOMEG00000014425	upf3a	77	54.133	ENSSBOG00000029989	UPF3A	84	54.133	Saimiri_boliviensis_boliviensis
ENSOMEG00000014425	upf3a	82	46.569	ENSSBOG00000019740	UPF3B	78	72.393	Saimiri_boliviensis_boliviensis
ENSOMEG00000014425	upf3a	84	64.865	ENSSHAG00000009895	UPF3A	95	65.441	Sarcophilus_harrisii
ENSOMEG00000014425	upf3a	99	68.898	ENSSFOG00015021851	upf3a	100	68.035	Scleropages_formosus
ENSOMEG00000014425	upf3a	100	80.244	ENSSMAG00000003858	upf3a	100	81.466	Scophthalmus_maximus
ENSOMEG00000014425	upf3a	53	67.843	ENSSMAG00000012913	upf3b	91	49.886	Scophthalmus_maximus
ENSOMEG00000014425	upf3a	100	85.804	ENSSDUG00000009680	upf3a	100	85.804	Seriola_dumerili
ENSOMEG00000014425	upf3a	50	66.946	ENSSDUG00000005682	upf3b	88	51.699	Seriola_dumerili
ENSOMEG00000014425	upf3a	100	88.769	ENSSLDG00000009700	upf3a	100	88.769	Seriola_lalandi_dorsalis
ENSOMEG00000014425	upf3a	82	50.843	ENSSLDG00000003130	upf3b	92	50.114	Seriola_lalandi_dorsalis
ENSOMEG00000014425	upf3a	79	49.479	ENSSARG00000007262	UPF3A	92	47.917	Sorex_araneus
ENSOMEG00000014425	upf3a	88	46.009	ENSSPUG00000013082	UPF3B	87	47.926	Sphenodon_punctatus
ENSOMEG00000014425	upf3a	56	66.421	ENSSPAG00000009989	upf3b	92	48.519	Stegastes_partitus
ENSOMEG00000014425	upf3a	100	88.121	ENSSPAG00000007938	upf3a	100	88.121	Stegastes_partitus
ENSOMEG00000014425	upf3a	81	57.949	ENSSSCG00000024679	UPF3A	78	57.692	Sus_scrofa
ENSOMEG00000014425	upf3a	81	48.371	ENSTGUG00000003413	UPF3B	93	53.117	Taeniopygia_guttata
ENSOMEG00000014425	upf3a	82	67.003	ENSTGUG00000009493	UPF3A	99	66.000	Taeniopygia_guttata
ENSOMEG00000014425	upf3a	100	80.994	ENSTRUG00000012730	upf3a	100	80.994	Takifugu_rubripes
ENSOMEG00000014425	upf3a	82	52.058	ENSTRUG00000010645	upf3b	89	50.608	Takifugu_rubripes
ENSOMEG00000014425	upf3a	84	73.350	ENSTNIG00000014973	upf3a	100	73.096	Tetraodon_nigroviridis
ENSOMEG00000014425	upf3a	72	53.714	ENSTTRG00000015414	UPF3A	73	53.714	Tursiops_truncatus
ENSOMEG00000014425	upf3a	84	44.706	ENSUAMG00000024565	UPF3B	62	71.014	Ursus_americanus
ENSOMEG00000014425	upf3a	82	56.812	ENSVPAG00000003525	UPF3A	95	57.289	Vicugna_pacos
ENSOMEG00000014425	upf3a	84	46.715	ENSVVUG00000011594	UPF3B	77	71.515	Vulpes_vulpes
ENSOMEG00000014425	upf3a	83	57.286	ENSVVUG00000013538	UPF3A	82	54.545	Vulpes_vulpes
ENSOMEG00000014425	upf3a	83	57.143	ENSXETG00000002572	upf3a	92	57.143	Xenopus_tropicalis
ENSOMEG00000014425	upf3a	82	46.096	ENSXETG00000007440	upf3b	71	73.620	Xenopus_tropicalis
ENSOMEG00000014425	upf3a	82	47.716	ENSXMAG00000013680	upf3b	88	53.171	Xiphophorus_maculatus
ENSOMEG00000014425	upf3a	100	85.560	ENSXMAG00000013452	upf3a	100	85.560	Xiphophorus_maculatus