EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSOMEG00000014556 (Gene tree)
Gene ID: 112162357
Gene Symbol: trub1
Alias: -
Full Name: TruB pseudouridine synthase family member 1
Gene Type: protein_coding
Species: Oryzias_melastigma
Status: putative
Strand: Minus strand
Length: 5994 bases
Position: chrNVQA01000029.1:1518781-1524774
Accession: 112162357
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOMEP00000030351	TruB_N	PF01509.18	3e-46	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOMET00000020773	-	2176	-	ENSOMEP00000030351	285 (aa)	XP_024153934	UPI000CF81916

Gene Model

Click here to download ENSOMEG00000014556's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOMEG00000014556's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSOMEG00000014556	trub1	73	31.111	ENSOMEG00000006702	trub2	68	31.111

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOMEG00000014556	trub1	89	66.797	ENSG00000165832	TRUB1	74	66.409	Homo_sapiens
ENSOMEG00000014556	trub1	91	84.556	ENSAPOG00000020565	trub1	99	80.435	Acanthochromis_polyacanthus
ENSOMEG00000014556	trub1	96	63.121	ENSAMEG00000014931	TRUB1	80	63.028	Ailuropoda_melanoleuca
ENSOMEG00000014556	trub1	91	78.378	ENSACIG00000003060	trub1	86	78.378	Amphilophus_citrinellus
ENSOMEG00000014556	trub1	91	84.556	ENSAOCG00000017188	trub1	94	84.556	Amphiprion_ocellaris
ENSOMEG00000014556	trub1	91	84.170	ENSAPEG00000015209	trub1	94	84.170	Amphiprion_percula
ENSOMEG00000014556	trub1	91	83.525	ENSATEG00000023291	trub1	94	83.525	Anabas_testudineus
ENSOMEG00000014556	trub1	85	67.769	ENSAPLG00000006808	TRUB1	87	67.769	Anas_platyrhynchos
ENSOMEG00000014556	trub1	85	65.021	ENSACAG00000009282	TRUB1	88	65.021	Anolis_carolinensis
ENSOMEG00000014556	trub1	90	66.537	ENSANAG00000022870	TRUB1	74	66.409	Aotus_nancymaae
ENSOMEG00000014556	trub1	91	83.012	ENSACLG00000000823	trub1	93	83.012	Astatotilapia_calliptera
ENSOMEG00000014556	trub1	95	72.426	ENSAMXG00000015845	trub1	91	72.426	Astyanax_mexicanus
ENSOMEG00000014556	trub1	85	69.835	ENSBTAG00000012955	TRUB1	74	67.568	Bos_taurus
ENSOMEG00000014556	trub1	90	66.537	ENSCJAG00000047815	TRUB1	74	66.409	Callithrix_jacchus
ENSOMEG00000014556	trub1	85	68.595	ENSCAFG00000011688	TRUB1	69	68.595	Canis_familiaris
ENSOMEG00000014556	trub1	85	68.595	ENSCAFG00020013237	TRUB1	69	68.595	Canis_lupus_dingo
ENSOMEG00000014556	trub1	85	69.008	ENSCHIG00000020884	TRUB1	78	66.795	Capra_hircus
ENSOMEG00000014556	trub1	90	64.591	ENSTSYG00000000446	TRUB1	75	64.122	Carlito_syrichta
ENSOMEG00000014556	trub1	73	62.019	ENSCAPG00000017088	TRUB1	80	62.019	Cavia_aperea
ENSOMEG00000014556	trub1	64	68.681	ENSCPOG00000040236	-	75	68.681	Cavia_porcellus
ENSOMEG00000014556	trub1	65	68.108	ENSCPOG00000030129	-	72	68.108	Cavia_porcellus
ENSOMEG00000014556	trub1	90	66.537	ENSCCAG00000028842	TRUB1	74	66.409	Cebus_capucinus
ENSOMEG00000014556	trub1	85	68.595	ENSCATG00000033431	TRUB1	74	66.409	Cercocebus_atys
ENSOMEG00000014556	trub1	64	67.582	ENSCLAG00000008664	TRUB1	75	67.582	Chinchilla_lanigera
ENSOMEG00000014556	trub1	85	68.595	ENSCSAG00000004891	TRUB1	74	66.409	Chlorocebus_sabaeus
ENSOMEG00000014556	trub1	85	61.983	ENSCHOG00000011931	TRUB1	75	60.232	Choloepus_hoffmanni
ENSOMEG00000014556	trub1	89	68.504	ENSCPBG00000003051	TRUB1	88	68.504	Chrysemys_picta_bellii
ENSOMEG00000014556	trub1	85	68.595	ENSCANG00000029445	TRUB1	74	66.409	Colobus_angolensis_palliatus
ENSOMEG00000014556	trub1	92	56.654	ENSCGRG00001010322	-	71	56.654	Cricetulus_griseus_chok1gshd
ENSOMEG00000014556	trub1	74	68.095	ENSCGRG00001016772	-	70	67.925	Cricetulus_griseus_chok1gshd
ENSOMEG00000014556	trub1	83	67.797	ENSCGRG00000010806	Trub1	74	67.901	Cricetulus_griseus_crigri
ENSOMEG00000014556	trub1	88	76.800	ENSCSEG00000011261	trub1	81	76.800	Cynoglossus_semilaevis
ENSOMEG00000014556	trub1	89	82.213	ENSCVAG00000008791	trub1	78	82.213	Cyprinodon_variegatus
ENSOMEG00000014556	trub1	93	73.106	ENSDARG00000053805	trub1	89	73.106	Danio_rerio
ENSOMEG00000014556	trub1	85	67.355	ENSDNOG00000001069	TRUB1	69	67.355	Dasypus_novemcinctus
ENSOMEG00000014556	trub1	83	67.797	ENSDORG00000010431	Trub1	75	64.751	Dipodomys_ordii
ENSOMEG00000014556	trub1	68	66.176	ENSETEG00000009183	TRUB1	60	60.256	Echinops_telfairi
ENSOMEG00000014556	trub1	91	64.528	ENSEASG00005014739	TRUB1	79	63.475	Equus_asinus_asinus
ENSOMEG00000014556	trub1	91	64.528	ENSECAG00000007177	TRUB1	79	63.475	Equus_caballus
ENSOMEG00000014556	trub1	85	59.917	ENSEEUG00000013993	TRUB1	72	57.752	Erinaceus_europaeus
ENSOMEG00000014556	trub1	91	76.154	ENSELUG00000000502	trub1	91	76.154	Esox_lucius
ENSOMEG00000014556	trub1	90	67.315	ENSFCAG00000031927	TRUB1	80	63.830	Felis_catus
ENSOMEG00000014556	trub1	75	68.075	ENSFALG00000002232	TRUB1	82	68.075	Ficedula_albicollis
ENSOMEG00000014556	trub1	64	69.231	ENSFDAG00000008140	TRUB1	84	64.878	Fukomys_damarensis
ENSOMEG00000014556	trub1	91	82.239	ENSFHEG00000004016	trub1	89	82.239	Fundulus_heteroclitus
ENSOMEG00000014556	trub1	86	65.714	ENSGALG00000009091	TRUB1	86	65.714	Gallus_gallus
ENSOMEG00000014556	trub1	90	81.395	ENSGAFG00000009193	trub1	90	80.233	Gambusia_affinis
ENSOMEG00000014556	trub1	69	82.741	ENSGACG00000015387	trub1	97	82.741	Gasterosteus_aculeatus
ENSOMEG00000014556	trub1	92	67.433	ENSGAGG00000009758	TRUB1	73	67.954	Gopherus_agassizii
ENSOMEG00000014556	trub1	89	66.797	ENSGGOG00000004583	TRUB1	74	66.409	Gorilla_gorilla
ENSOMEG00000014556	trub1	91	83.398	ENSHBUG00000016787	trub1	93	83.398	Haplochromis_burtoni
ENSOMEG00000014556	trub1	85	68.465	ENSHGLG00000015314	TRUB1	74	65.891	Heterocephalus_glaber_female
ENSOMEG00000014556	trub1	64	68.681	ENSHGLG00100009183	TRUB1	77	68.681	Heterocephalus_glaber_male
ENSOMEG00000014556	trub1	92	78.927	ENSHCOG00000017877	trub1	94	78.927	Hippocampus_comes
ENSOMEG00000014556	trub1	88	77.600	ENSIPUG00000017559	trub1	88	77.600	Ictalurus_punctatus
ENSOMEG00000014556	trub1	96	63.177	ENSSTOG00000003641	TRUB1	83	63.082	Ictidomys_tridecemlineatus
ENSOMEG00000014556	trub1	85	67.355	ENSJJAG00000011800	Trub1	71	67.355	Jaculus_jaculus
ENSOMEG00000014556	trub1	98	78.777	ENSKMAG00000006232	trub1	99	78.777	Kryptolebias_marmoratus
ENSOMEG00000014556	trub1	98	76.512	ENSLBEG00000026722	trub1	98	76.512	Labrus_bergylta
ENSOMEG00000014556	trub1	91	71.042	ENSLACG00000014885	TRUB1	86	71.042	Latimeria_chalumnae
ENSOMEG00000014556	trub1	91	72.587	ENSLOCG00000012979	trub1	87	72.587	Lepisosteus_oculatus
ENSOMEG00000014556	trub1	90	65.370	ENSLAFG00000015452	TRUB1	80	62.500	Loxodonta_africana
ENSOMEG00000014556	trub1	85	68.595	ENSMFAG00000031767	TRUB1	74	66.409	Macaca_fascicularis
ENSOMEG00000014556	trub1	85	68.595	ENSMMUG00000001902	TRUB1	74	66.409	Macaca_mulatta
ENSOMEG00000014556	trub1	85	62.810	ENSMNEG00000044646	TRUB1	73	61.390	Macaca_nemestrina
ENSOMEG00000014556	trub1	89	66.797	ENSMLEG00000042655	TRUB1	74	66.409	Mandrillus_leucophaeus
ENSOMEG00000014556	trub1	91	82.625	ENSMZEG00005024095	trub1	93	82.625	Maylandia_zebra
ENSOMEG00000014556	trub1	86	66.531	ENSMGAG00000011135	TRUB1	84	66.531	Meleagris_gallopavo
ENSOMEG00000014556	trub1	83	65.678	ENSMAUG00000011101	Trub1	77	63.359	Mesocricetus_auratus
ENSOMEG00000014556	trub1	90	66.148	ENSMICG00000016324	TRUB1	74	66.023	Microcebus_murinus
ENSOMEG00000014556	trub1	83	68.644	ENSMOCG00000017759	Trub1	79	66.412	Microtus_ochrogaster
ENSOMEG00000014556	trub1	85	68.595	ENSMODG00000009676	TRUB1	70	67.063	Monodelphis_domestica
ENSOMEG00000014556	trub1	84	67.782	MGP_CAROLIEiJ_G0023100	Trub1	82	65.517	Mus_caroli
ENSOMEG00000014556	trub1	84	66.946	ENSMUSG00000025086	Trub1	82	64.532	Mus_musculus
ENSOMEG00000014556	trub1	89	64.961	MGP_PahariEiJ_G0014588	Trub1	77	64.865	Mus_pahari
ENSOMEG00000014556	trub1	84	66.946	MGP_SPRETEiJ_G0024021	Trub1	82	64.532	Mus_spretus
ENSOMEG00000014556	trub1	90	66.926	ENSMPUG00000003556	TRUB1	74	66.795	Mustela_putorius_furo
ENSOMEG00000014556	trub1	91	64.751	ENSMLUG00000017686	TRUB1	77	64.751	Myotis_lucifugus
ENSOMEG00000014556	trub1	90	67.704	ENSNGAG00000018682	Trub1	74	67.568	Nannospalax_galili
ENSOMEG00000014556	trub1	87	85.020	ENSNBRG00000023393	trub1	88	85.020	Neolamprologus_brichardi
ENSOMEG00000014556	trub1	89	65.748	ENSNLEG00000016345	TRUB1	74	66.023	Nomascus_leucogenys
ENSOMEG00000014556	trub1	71	70.647	ENSMEUG00000006603	TRUB1	79	68.182	Notamacropus_eugenii
ENSOMEG00000014556	trub1	91	62.977	ENSOPRG00000009371	TRUB1	82	60.498	Ochotona_princeps
ENSOMEG00000014556	trub1	92	63.333	ENSODEG00000010854	TRUB1	76	63.333	Octodon_degus
ENSOMEG00000014556	trub1	91	82.239	ENSONIG00000007249	trub1	94	82.239	Oreochromis_niloticus
ENSOMEG00000014556	trub1	90	64.844	ENSOANG00000001556	TRUB1	87	63.704	Ornithorhynchus_anatinus
ENSOMEG00000014556	trub1	90	65.759	ENSOCUG00000009456	TRUB1	75	65.637	Oryctolagus_cuniculus
ENSOMEG00000014556	trub1	99	91.459	ENSORLG00000029719	trub1	100	91.459	Oryzias_latipes
ENSOMEG00000014556	trub1	100	90.877	ENSORLG00020016767	trub1	100	90.877	Oryzias_latipes_hni
ENSOMEG00000014556	trub1	99	90.391	ENSORLG00015014728	trub1	100	90.391	Oryzias_latipes_hsok
ENSOMEG00000014556	trub1	90	66.537	ENSOGAG00000015895	TRUB1	74	66.409	Otolemur_garnettii
ENSOMEG00000014556	trub1	85	67.470	ENSOARG00000015591	TRUB1	77	64.444	Ovis_aries
ENSOMEG00000014556	trub1	89	66.797	ENSPPAG00000043645	TRUB1	74	66.409	Pan_paniscus
ENSOMEG00000014556	trub1	90	66.926	ENSPPRG00000007096	TRUB1	74	66.795	Panthera_pardus
ENSOMEG00000014556	trub1	90	66.926	ENSPTIG00000006378	TRUB1	80	63.475	Panthera_tigris_altaica
ENSOMEG00000014556	trub1	89	66.797	ENSPTRG00000002964	TRUB1	74	66.409	Pan_troglodytes
ENSOMEG00000014556	trub1	85	68.595	ENSPANG00000020712	TRUB1	74	66.409	Papio_anubis
ENSOMEG00000014556	trub1	59	75.000	ENSPKIG00000003852	trub1	72	75.000	Paramormyrops_kingsleyae
ENSOMEG00000014556	trub1	86	70.325	ENSPSIG00000012877	TRUB1	84	70.325	Pelodiscus_sinensis
ENSOMEG00000014556	trub1	97	73.571	ENSPMGG00000000075	trub1	99	73.571	Periophthalmus_magnuspinnatus
ENSOMEG00000014556	trub1	91	65.504	ENSPEMG00000011156	Trub1	76	65.504	Peromyscus_maniculatus_bairdii
ENSOMEG00000014556	trub1	85	68.595	ENSPCIG00000009729	TRUB1	69	66.667	Phascolarctos_cinereus
ENSOMEG00000014556	trub1	89	81.961	ENSPFOG00000009950	trub1	93	81.961	Poecilia_formosa
ENSOMEG00000014556	trub1	92	81.609	ENSPLAG00000013855	trub1	91	81.609	Poecilia_latipinna
ENSOMEG00000014556	trub1	92	81.992	ENSPMEG00000009064	trub1	94	81.992	Poecilia_mexicana
ENSOMEG00000014556	trub1	92	81.226	ENSPREG00000003343	trub1	94	81.226	Poecilia_reticulata
ENSOMEG00000014556	trub1	89	66.406	ENSPPYG00000002676	TRUB1	74	66.023	Pongo_abelii
ENSOMEG00000014556	trub1	91	60.465	ENSPCAG00000008427	TRUB1	74	60.618	Procavia_capensis
ENSOMEG00000014556	trub1	90	60.700	ENSPCOG00000024360	TRUB1	73	59.846	Propithecus_coquereli
ENSOMEG00000014556	trub1	71	70.149	ENSPVAG00000007575	TRUB1	83	67.431	Pteropus_vampyrus
ENSOMEG00000014556	trub1	91	83.398	ENSPNYG00000018614	trub1	93	83.398	Pundamilia_nyererei
ENSOMEG00000014556	trub1	95	64.338	ENSPNAG00000006881	trub1	88	63.603	Pygocentrus_nattereri
ENSOMEG00000014556	trub1	85	66.667	ENSRNOG00000017321	Trub1	77	64.122	Rattus_norvegicus
ENSOMEG00000014556	trub1	89	58.527	ENSRBIG00000033423	TRUB1	72	58.238	Rhinopithecus_bieti
ENSOMEG00000014556	trub1	89	66.797	ENSRROG00000033902	TRUB1	74	66.409	Rhinopithecus_roxellana
ENSOMEG00000014556	trub1	90	66.537	ENSSBOG00000024237	TRUB1	74	66.409	Saimiri_boliviensis_boliviensis
ENSOMEG00000014556	trub1	74	68.075	ENSSHAG00000009346	TRUB1	71	68.075	Sarcophilus_harrisii
ENSOMEG00000014556	trub1	98	70.251	ENSSFOG00015022124	trub1	95	70.251	Scleropages_formosus
ENSOMEG00000014556	trub1	93	82.197	ENSSMAG00000001020	trub1	94	82.197	Scophthalmus_maximus
ENSOMEG00000014556	trub1	91	86.873	ENSSDUG00000016414	trub1	93	86.873	Seriola_dumerili
ENSOMEG00000014556	trub1	91	86.873	ENSSLDG00000015486	trub1	93	86.873	Seriola_lalandi_dorsalis
ENSOMEG00000014556	trub1	92	65.779	ENSSPUG00000001642	TRUB1	90	65.779	Sphenodon_punctatus
ENSOMEG00000014556	trub1	91	82.239	ENSSPAG00000001217	trub1	93	82.239	Stegastes_partitus
ENSOMEG00000014556	trub1	89	66.797	ENSSSCG00000010653	TRUB1	76	65.385	Sus_scrofa
ENSOMEG00000014556	trub1	85	69.008	ENSTGUG00000010971	TRUB1	86	69.008	Taeniopygia_guttata
ENSOMEG00000014556	trub1	75	57.674	ENSTBEG00000002880	TRUB1	84	57.674	Tupaia_belangeri
ENSOMEG00000014556	trub1	75	67.130	ENSTTRG00000005767	TRUB1	84	66.516	Tursiops_truncatus
ENSOMEG00000014556	trub1	90	66.926	ENSUAMG00000024876	TRUB1	74	66.795	Ursus_americanus
ENSOMEG00000014556	trub1	85	69.008	ENSUMAG00000002411	TRUB1	80	66.502	Ursus_maritimus
ENSOMEG00000014556	trub1	85	68.595	ENSVPAG00000005507	TRUB1	69	68.595	Vicugna_pacos
ENSOMEG00000014556	trub1	85	68.595	ENSVVUG00000010085	TRUB1	63	65.649	Vulpes_vulpes
ENSOMEG00000014556	trub1	86	68.571	ENSXETG00000023828	trub1	88	68.571	Xenopus_tropicalis
ENSOMEG00000014556	trub1	86	82.787	ENSXCOG00000017847	trub1	86	82.787	Xiphophorus_couchianus
ENSOMEG00000014556	trub1	92	81.609	ENSXMAG00000014701	trub1	94	81.609	Xiphophorus_maculatus