EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSOMEG00000014736 (Gene tree)
Gene ID
112153745
Gene Symbol
upf3b
Alias
-
Full Name
UPF3B%2C regulator of nonsense mediated mRNA decay
Gene Type
protein_coding
Species
Oryzias_melastigma
Status
putative
Strand
Plus strand
Length
3707 bases
Position
chrNVQA01000017.1:16309227-16312933
Accession
112153745
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSOMEP00000013290Smg4_UPF3PF03467.157.2e-5411
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSOMET00000020873-2825-ENSOMEP00000013290457 (aa)XP_024139890UPI000CF831F0
Gene Model
Click here to download ENSOMEG00000014736's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSOMEG00000014736's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSOMEG00000014736upf3b9248.741ENSOMEG00000014425upf3a5852.747
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSOMEG00000014736upf3b9554.486ENSG00000125351UPF3B9664.455Homo_sapiens
ENSOMEG00000014736upf3b10079.212ENSAPOG00000012775upf3b10079.212Acanthochromis_polyacanthus
ENSOMEG00000014736upf3b9856.025ENSAMEG00000000163UPF3B8758.432Ailuropoda_melanoleuca
ENSOMEG00000014736upf3b9148.372ENSAMEG00000004259UPF3A5552.896Ailuropoda_melanoleuca
ENSOMEG00000014736upf3b10073.218ENSACIG00000013582upf3b10073.650Amphilophus_citrinellus
ENSOMEG00000014736upf3b10078.556ENSAOCG00000000706upf3b10078.556Amphiprion_ocellaris
ENSOMEG00000014736upf3b10079.650ENSAPEG00000005545upf3b10079.650Amphiprion_percula
ENSOMEG00000014736upf3b10076.674ENSATEG00000018742upf3b10077.106Anabas_testudineus
ENSOMEG00000014736upf3b8648.418ENSACAG00000001540UPF3A5651.667Anolis_carolinensis
ENSOMEG00000014736upf3b9458.014ENSACAG00000003625UPF3B9456.757Anolis_carolinensis
ENSOMEG00000014736upf3b9557.143ENSANAG00000021894-7473.585Aotus_nancymaae
ENSOMEG00000014736upf3b9553.626ENSANAG00000025598-8354.094Aotus_nancymaae
ENSOMEG00000014736upf3b10078.649ENSACLG00000001649upf3b10078.431Astatotilapia_calliptera
ENSOMEG00000014736upf3b7178.764ENSAMXG00000000199upf3b8780.749Astyanax_mexicanus
ENSOMEG00000014736upf3b5664.964ENSBTAG00000035615UPF3B5273.585Bos_taurus
ENSOMEG00000014736upf3b9556.512ENSCJAG00000004975UPF3B7472.956Callithrix_jacchus
ENSOMEG00000014736upf3b9855.202ENSCAFG00000018426UPF3B8955.107Canis_familiaris
ENSOMEG00000014736upf3b9853.079ENSCAFG00020004074UPF3B6877.941Canis_lupus_dingo
ENSOMEG00000014736upf3b9854.321ENSCHIG00000000247-8754.128Capra_hircus
ENSOMEG00000014736upf3b9854.115ENSCHIG00000018011-8954.128Capra_hircus
ENSOMEG00000014736upf3b9556.703ENSTSYG00000014690UPF3B7466.667Carlito_syrichta
ENSOMEG00000014736upf3b5454.217ENSCPOG00000006824UPF3A5551.452Cavia_porcellus
ENSOMEG00000014736upf3b8739.447ENSCCAG00000029813-5058.824Cebus_capucinus
ENSOMEG00000014736upf3b8842.336ENSCATG00000029733UPF3A5550.575Cercocebus_atys
ENSOMEG00000014736upf3b9554.486ENSCATG00000017506UPF3B7473.585Cercocebus_atys
ENSOMEG00000014736upf3b6361.921ENSCLAG00000003260UPF3B8555.825Chinchilla_lanigera
ENSOMEG00000014736upf3b8842.892ENSCSAG00000017388UPF3A5152.869Chlorocebus_sabaeus
ENSOMEG00000014736upf3b6260.870ENSCSAG00000018348UPF3B8955.455Chlorocebus_sabaeus
ENSOMEG00000014736upf3b9556.885ENSCPBG00000020685UPF3B9454.831Chrysemys_picta_bellii
ENSOMEG00000014736upf3b5664.338ENSCANG00000029220UPF3B5073.585Colobus_angolensis_palliatus
ENSOMEG00000014736upf3b9155.450ENSCGRG00001006858-8755.529Cricetulus_griseus_chok1gshd
ENSOMEG00000014736upf3b6953.313ENSCGRG00001013643-7857.586Cricetulus_griseus_chok1gshd
ENSOMEG00000014736upf3b8955.932ENSCGRG00000007627Upf3b9755.181Cricetulus_griseus_crigri
ENSOMEG00000014736upf3b9476.443ENSCSEG00000002046upf3b9273.933Cynoglossus_semilaevis
ENSOMEG00000014736upf3b10077.293ENSCVAG00000005030upf3b10077.293Cyprinodon_variegatus
ENSOMEG00000014736upf3b9547.427ENSDARG00000069297upf3a8442.754Danio_rerio
ENSOMEG00000014736upf3b9469.725ENSDARG00000000489upf3b9966.309Danio_rerio
ENSOMEG00000014736upf3b9654.737ENSDNOG00000008665UPF3B8654.801Dasypus_novemcinctus
ENSOMEG00000014736upf3b7550.992ENSDNOG00000034391UPF3A5357.261Dasypus_novemcinctus
ENSOMEG00000014736upf3b9555.333ENSDORG00000006077Upf3b9453.187Dipodomys_ordii
ENSOMEG00000014736upf3b9854.140ENSEASG00005012919UPF3B8756.770Equus_asinus_asinus
ENSOMEG00000014736upf3b8948.798ENSEASG00005021884UPF3A5055.602Equus_asinus_asinus
ENSOMEG00000014736upf3b8949.279ENSECAG00000017141UPF3A5055.602Equus_caballus
ENSOMEG00000014736upf3b9854.140ENSECAG00000016947UPF3B8756.770Equus_caballus
ENSOMEG00000014736upf3b9963.017ENSELUG00000020389upf3b10067.490Esox_lucius
ENSOMEG00000014736upf3b9557.143ENSFCAG00000004388UPF3B8359.801Felis_catus
ENSOMEG00000014736upf3b9754.065ENSFALG00000001569UPF3B9454.184Ficedula_albicollis
ENSOMEG00000014736upf3b9854.777ENSFDAG00000018869UPF3B8757.482Fukomys_damarensis
ENSOMEG00000014736upf3b10077.174ENSFHEG00000017895upf3b10077.174Fundulus_heteroclitus
ENSOMEG00000014736upf3b10065.328ENSGMOG00000001621upf3b10065.254Gadus_morhua
ENSOMEG00000014736upf3b9457.616ENSGALG00000008618UPF3B9458.150Gallus_gallus
ENSOMEG00000014736upf3b10076.201ENSGAFG00000000829upf3b10076.856Gambusia_affinis
ENSOMEG00000014736upf3b10071.398ENSGACG00000017435upf3b9484.375Gasterosteus_aculeatus
ENSOMEG00000014736upf3b9560.586ENSGAGG00000001219UPF3B9458.296Gopherus_agassizii
ENSOMEG00000014736upf3b9554.486ENSGGOG00000023995UPF3B8957.143Gorilla_gorilla
ENSOMEG00000014736upf3b10078.649ENSHBUG00000017393upf3b10078.431Haplochromis_burtoni
ENSOMEG00000014736upf3b9854.352ENSHGLG00000019582-8358.955Heterocephalus_glaber_female
ENSOMEG00000014736upf3b6954.790ENSHGLG00000011189-6759.155Heterocephalus_glaber_female
ENSOMEG00000014736upf3b6154.064ENSHGLG00000001544UPF3A6446.350Heterocephalus_glaber_female
ENSOMEG00000014736upf3b6954.790ENSHGLG00100001889-6859.155Heterocephalus_glaber_male
ENSOMEG00000014736upf3b9451.778ENSHGLG00100002042-8355.721Heterocephalus_glaber_male
ENSOMEG00000014736upf3b6154.064ENSHGLG00100013244UPF3A6446.350Heterocephalus_glaber_male
ENSOMEG00000014736upf3b10067.672ENSHCOG00000017004upf3b10061.207Hippocampus_comes
ENSOMEG00000014736upf3b10070.108ENSIPUG00000019249upf3b10070.108Ictalurus_punctatus
ENSOMEG00000014736upf3b9754.978ENSSTOG00000001101UPF3B8658.554Ictidomys_tridecemlineatus
ENSOMEG00000014736upf3b9553.846ENSJJAG00000000053Upf3b8356.328Jaculus_jaculus
ENSOMEG00000014736upf3b10079.869ENSKMAG00000020300upf3b10079.869Kryptolebias_marmoratus
ENSOMEG00000014736upf3b6082.182ENSLBEG00000028689upf3b6181.588Labrus_bergylta
ENSOMEG00000014736upf3b10055.578ENSLACG00000008691UPF3B10056.965Latimeria_chalumnae
ENSOMEG00000014736upf3b9351.259ENSLOCG00000002665upf3a5156.017Lepisosteus_oculatus
ENSOMEG00000014736upf3b6868.269ENSLOCG00000015238upf3b9864.206Lepisosteus_oculatus
ENSOMEG00000014736upf3b9854.989ENSLAFG00000001267UPF3B8558.495Loxodonta_africana
ENSOMEG00000014736upf3b9554.486ENSMFAG00000045414UPF3B7473.585Macaca_fascicularis
ENSOMEG00000014736upf3b8542.386ENSMMUG00000007449UPF3A5650.775Macaca_mulatta
ENSOMEG00000014736upf3b9554.486ENSMMUG00000020222UPF3B7473.585Macaca_mulatta
ENSOMEG00000014736upf3b9554.486ENSMNEG00000039794UPF3B7473.585Macaca_nemestrina
ENSOMEG00000014736upf3b9554.486ENSMLEG00000010999UPF3B7473.585Mandrillus_leucophaeus
ENSOMEG00000014736upf3b8742.327ENSMLEG00000014726UPF3A6050.579Mandrillus_leucophaeus
ENSOMEG00000014736upf3b10078.867ENSMZEG00005007871upf3b10078.649Maylandia_zebra
ENSOMEG00000014736upf3b7959.116ENSMGAG00000007728UPF3B9757.403Meleagris_gallopavo
ENSOMEG00000014736upf3b8647.420ENSMGAG00000014837UPF3A5450.226Meleagris_gallopavo
ENSOMEG00000014736upf3b8954.369ENSMAUG00000008705Upf3b8454.839Mesocricetus_auratus
ENSOMEG00000014736upf3b5664.964ENSMICG00000001743UPF3B5073.585Microcebus_murinus
ENSOMEG00000014736upf3b9552.391ENSMOCG00000017893Upf3b8454.237Microtus_ochrogaster
ENSOMEG00000014736upf3b10073.203ENSMMOG00000004183upf3b10073.144Mola_mola
ENSOMEG00000014736upf3b8751.852ENSMODG00000003159UPF3A5553.527Monodelphis_domestica
ENSOMEG00000014736upf3b9159.102ENSMODG00000010232UPF3B9859.242Monodelphis_domestica
ENSOMEG00000014736upf3b10074.409ENSMALG00000008042upf3b10075.484Monopterus_albus
ENSOMEG00000014736upf3b9751.983MGP_CAROLIEiJ_G0032999Upf3b8754.699Mus_caroli
ENSOMEG00000014736upf3b6654.693ENSMUSG00000038398Upf3a6547.857Mus_musculus
ENSOMEG00000014736upf3b9751.931ENSMUSG00000036572Upf3b8754.940Mus_musculus
ENSOMEG00000014736upf3b9752.807MGP_PahariEiJ_G0031543Upf3b8755.156Mus_pahari
ENSOMEG00000014736upf3b9751.931MGP_SPRETEiJ_G0034152Upf3b8754.940Mus_spretus
ENSOMEG00000014736upf3b6157.093MGP_SPRETEiJ_G0031958Upf3a6547.703Mus_spretus
ENSOMEG00000014736upf3b9556.416ENSMPUG00000001531UPF3B8556.824Mustela_putorius_furo
ENSOMEG00000014736upf3b8744.717ENSMLUG00000015905UPF3A5655.785Myotis_lucifugus
ENSOMEG00000014736upf3b9856.237ENSMLUG00000010821UPF3B8358.025Myotis_lucifugus
ENSOMEG00000014736upf3b9552.759ENSNGAG00000008231Upf3b8355.583Nannospalax_galili
ENSOMEG00000014736upf3b9057.041ENSNLEG00000014897UPF3B8957.143Nomascus_leucogenys
ENSOMEG00000014736upf3b9954.140ENSODEG00000002186-8756.295Octodon_degus
ENSOMEG00000014736upf3b10077.802ENSONIG00000002536upf3b10078.448Oreochromis_niloticus
ENSOMEG00000014736upf3b8244.186ENSOANG00000006985-5744.538Ornithorhynchus_anatinus
ENSOMEG00000014736upf3b9054.953ENSOANG00000002594-9854.953Ornithorhynchus_anatinus
ENSOMEG00000014736upf3b9754.489ENSOCUG00000010213UPF3B8757.110Oryctolagus_cuniculus
ENSOMEG00000014736upf3b10092.123ENSORLG00000001026upf3b10092.123Oryzias_latipes
ENSOMEG00000014736upf3b9250.227ENSORLG00000010911upf3a8242.080Oryzias_latipes
ENSOMEG00000014736upf3b10092.123ENSORLG00020003758upf3b10092.123Oryzias_latipes_hni
ENSOMEG00000014736upf3b9248.858ENSORLG00020014317upf3a8247.765Oryzias_latipes_hni
ENSOMEG00000014736upf3b10092.123ENSORLG00015012954upf3b10092.123Oryzias_latipes_hsok
ENSOMEG00000014736upf3b7447.368ENSOGAG00000004788UPF3A5756.846Otolemur_garnettii
ENSOMEG00000014736upf3b9655.076ENSOGAG00000033003-8853.494Otolemur_garnettii
ENSOMEG00000014736upf3b6361.921ENSOGAG00000004643-8758.432Otolemur_garnettii
ENSOMEG00000014736upf3b9853.988ENSOARG00000016051-8753.759Ovis_aries
ENSOMEG00000014736upf3b8845.721ENSOARG00000009004UPF3A8241.546Ovis_aries
ENSOMEG00000014736upf3b9554.486ENSPPAG00000040390UPF3B8957.143Pan_paniscus
ENSOMEG00000014736upf3b9557.143ENSPPRG00000023536UPF3B8457.933Panthera_pardus
ENSOMEG00000014736upf3b9552.128ENSPTIG00000015264UPF3B8457.831Panthera_tigris_altaica
ENSOMEG00000014736upf3b9554.486ENSPTRG00000022228UPF3B8957.143Pan_troglodytes
ENSOMEG00000014736upf3b8842.506ENSPANG00000004346UPF3A5550.575Papio_anubis
ENSOMEG00000014736upf3b9554.486ENSPANG00000000900UPF3B7473.585Papio_anubis
ENSOMEG00000014736upf3b9966.739ENSPKIG00000019226upf3b9383.333Paramormyrops_kingsleyae
ENSOMEG00000014736upf3b8650.962ENSPSIG00000007468UPF3A5752.301Pelodiscus_sinensis
ENSOMEG00000014736upf3b5761.450ENSPSIG00000005833UPF3B8863.710Pelodiscus_sinensis
ENSOMEG00000014736upf3b5684.766ENSPMGG00000016067upf3b9384.766Periophthalmus_magnuspinnatus
ENSOMEG00000014736upf3b9752.273ENSPEMG00000012352Upf3b8753.828Peromyscus_maniculatus_bairdii
ENSOMEG00000014736upf3b6356.187ENSPEMG00000019968-6751.379Peromyscus_maniculatus_bairdii
ENSOMEG00000014736upf3b8957.908ENSPCIG00000028914UPF3B8856.635Phascolarctos_cinereus
ENSOMEG00000014736upf3b7157.426ENSPCIG00000019590-6267.133Phascolarctos_cinereus
ENSOMEG00000014736upf3b8849.515ENSPLAG00000011960upf3a8346.479Poecilia_latipinna
ENSOMEG00000014736upf3b10076.419ENSPLAG00000005105upf3b10077.074Poecilia_latipinna
ENSOMEG00000014736upf3b10076.419ENSPLAG00000019922upf3b10077.074Poecilia_latipinna
ENSOMEG00000014736upf3b10076.419ENSPMEG00000023532upf3b10077.074Poecilia_mexicana
ENSOMEG00000014736upf3b5767.763ENSPMEG00000000836upf3a8241.844Poecilia_mexicana
ENSOMEG00000014736upf3b9853.512ENSPCAG00000009464UPF3B8753.440Procavia_capensis
ENSOMEG00000014736upf3b9557.143ENSPCOG00000021960UPF3B8359.801Propithecus_coquereli
ENSOMEG00000014736upf3b10079.212ENSPNYG00000009846upf3b10079.212Pundamilia_nyererei
ENSOMEG00000014736upf3b10070.021ENSPNAG00000021528upf3b10082.171Pygocentrus_nattereri
ENSOMEG00000014736upf3b9951.579ENSRNOG00000039994Upf3b8555.012Rattus_norvegicus
ENSOMEG00000014736upf3b8742.750ENSRBIG00000034007UPF3A5452.941Rhinopithecus_bieti
ENSOMEG00000014736upf3b9554.486ENSRROG00000041031UPF3B7473.585Rhinopithecus_roxellana
ENSOMEG00000014736upf3b8743.000ENSRROG00000012212UPF3A5450.775Rhinopithecus_roxellana
ENSOMEG00000014736upf3b9556.954ENSSBOG00000019740UPF3B9963.981Saimiri_boliviensis_boliviensis
ENSOMEG00000014736upf3b8960.197ENSSHAG00000008634UPF3B9556.167Sarcophilus_harrisii
ENSOMEG00000014736upf3b8751.852ENSSHAG00000009895UPF3A5653.527Sarcophilus_harrisii
ENSOMEG00000014736upf3b9966.957ENSSFOG00015005614upf3b10066.449Scleropages_formosus
ENSOMEG00000014736upf3b10072.961ENSSMAG00000012913upf3b10084.375Scophthalmus_maximus
ENSOMEG00000014736upf3b6468.712ENSSDUG00000009680upf3a5475.000Seriola_dumerili
ENSOMEG00000014736upf3b10076.356ENSSDUG00000005682upf3b10077.223Seriola_dumerili
ENSOMEG00000014736upf3b10077.874ENSSLDG00000003130upf3b10077.440Seriola_lalandi_dorsalis
ENSOMEG00000014736upf3b8952.133ENSSARG00000004147UPF3B9652.914Sorex_araneus
ENSOMEG00000014736upf3b9555.459ENSSPUG00000013082UPF3B9454.803Sphenodon_punctatus
ENSOMEG00000014736upf3b9979.736ENSSPAG00000009989upf3b9979.736Stegastes_partitus
ENSOMEG00000014736upf3b9755.556ENSSSCG00000012617UPF3B8657.042Sus_scrofa
ENSOMEG00000014736upf3b8842.822ENSSSCG00000024679UPF3A5752.282Sus_scrofa
ENSOMEG00000014736upf3b8743.951ENSTGUG00000009493UPF3A6450.000Taeniopygia_guttata
ENSOMEG00000014736upf3b9058.654ENSTGUG00000003413UPF3B9659.179Taeniopygia_guttata
ENSOMEG00000014736upf3b10073.420ENSTRUG00000010645upf3b10072.867Takifugu_rubripes
ENSOMEG00000014736upf3b9347.807ENSTRUG00000012730upf3a5161.224Takifugu_rubripes
ENSOMEG00000014736upf3b10065.584ENSTNIG00000015763upf3b10061.957Tetraodon_nigroviridis
ENSOMEG00000014736upf3b8845.679ENSTNIG00000014973upf3a5852.697Tetraodon_nigroviridis
ENSOMEG00000014736upf3b9647.890ENSTBEG00000003229UPF3B6560.987Tupaia_belangeri
ENSOMEG00000014736upf3b9853.277ENSUAMG00000024565UPF3B8755.344Ursus_americanus
ENSOMEG00000014736upf3b9151.429ENSUMAG00000002150UPF3B8852.844Ursus_maritimus
ENSOMEG00000014736upf3b8744.554ENSVPAG00000003525UPF3A5856.723Vicugna_pacos
ENSOMEG00000014736upf3b8257.143ENSVPAG00000009971UPF3B9357.143Vicugna_pacos
ENSOMEG00000014736upf3b9853.488ENSVVUG00000011594UPF3B7473.585Vulpes_vulpes
ENSOMEG00000014736upf3b9451.136ENSXETG00000007440upf3b8471.134Xenopus_tropicalis
ENSOMEG00000014736upf3b10071.397ENSXCOG00000016586upf3b9786.154Xiphophorus_couchianus
ENSOMEG00000014736upf3b10076.419ENSXMAG00000013680upf3b10077.074Xiphophorus_maculatus
ENSOMEG00000014736upf3b6064.331ENSXMAG00000013452upf3a8241.866Xiphophorus_maculatus

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