EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSOMEG00000015397 (Gene tree)
Gene ID: 112147443
Gene Symbol: xrn1
Alias: -
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Oryzias_melastigma
Status: putative
Strand: Plus strand
Length: 24454 bases
Position: chrNVQA01000011.1:14178710-14203163
Accession: 112147443
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOMEP00000013803	XRN_N	PF03159.18	2.8e-96	1	1
ENSOMEP00000030831	XRN_N	PF03159.18	3.2e-96	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOMET00000021540	-	4695	-	ENSOMEP00000013803	1564 (aa)	-	-
ENSOMET00000033301	-	6865	-	ENSOMEP00000030831	1685 (aa)	XP_024129609	UPI000CF7FE2B

Gene Model

Click here to download ENSOMEG00000015397's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOMEG00000015397's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOMEG00000015397	xrn1	99	72.535	ENSG00000114127	XRN1	96	96.117	Homo_sapiens
ENSOMEG00000015397	xrn1	100	80.653	ENSAPOG00000000622	xrn1	94	86.412	Acanthochromis_polyacanthus
ENSOMEG00000015397	xrn1	100	72.786	ENSAMEG00000012538	XRN1	93	72.587	Ailuropoda_melanoleuca
ENSOMEG00000015397	xrn1	99	87.469	ENSACIG00000001057	xrn1	98	88.115	Amphilophus_citrinellus
ENSOMEG00000015397	xrn1	99	87.438	ENSAOCG00000014097	xrn1	100	81.707	Amphiprion_ocellaris
ENSOMEG00000015397	xrn1	99	89.071	ENSAPEG00000006620	xrn1	99	84.433	Amphiprion_percula
ENSOMEG00000015397	xrn1	100	78.562	ENSATEG00000009752	xrn1	100	78.500	Anabas_testudineus
ENSOMEG00000015397	xrn1	98	72.682	ENSAPLG00000004905	XRN1	91	72.682	Anas_platyrhynchos
ENSOMEG00000015397	xrn1	100	72.302	ENSACAG00000004985	XRN1	100	71.118	Anolis_carolinensis
ENSOMEG00000015397	xrn1	99	73.187	ENSANAG00000029013	XRN1	99	74.009	Aotus_nancymaae
ENSOMEG00000015397	xrn1	99	88.033	ENSACLG00000004806	xrn1	94	88.033	Astatotilapia_calliptera
ENSOMEG00000015397	xrn1	99	76.206	ENSAMXG00000019370	xrn1	95	98.058	Astyanax_mexicanus
ENSOMEG00000015397	xrn1	100	72.705	ENSBTAG00000011524	XRN1	95	72.602	Bos_taurus
ENSOMEG00000015397	xrn1	77	38.153	WBGene00012730	xrn-1	84	36.527	Caenorhabditis_elegans
ENSOMEG00000015397	xrn1	99	72.942	ENSCJAG00000001872	XRN1	92	72.801	Callithrix_jacchus
ENSOMEG00000015397	xrn1	100	73.366	ENSCAFG00000007783	XRN1	95	72.794	Canis_familiaris
ENSOMEG00000015397	xrn1	100	73.187	ENSCAFG00020009120	XRN1	99	75.987	Canis_lupus_dingo
ENSOMEG00000015397	xrn1	99	72.786	ENSCHIG00000019192	XRN1	93	72.683	Capra_hircus
ENSOMEG00000015397	xrn1	99	72.905	ENSTSYG00000002705	XRN1	92	72.638	Carlito_syrichta
ENSOMEG00000015397	xrn1	60	62.645	ENSCAPG00000004604	-	99	62.810	Cavia_aperea
ENSOMEG00000015397	xrn1	100	73.024	ENSCCAG00000034800	XRN1	99	78.219	Cebus_capucinus
ENSOMEG00000015397	xrn1	99	72.838	ENSCATG00000041794	XRN1	92	72.838	Cercocebus_atys
ENSOMEG00000015397	xrn1	100	73.024	ENSCLAG00000001451	XRN1	99	78.537	Chinchilla_lanigera
ENSOMEG00000015397	xrn1	99	72.742	ENSCSAG00000011265	XRN1	93	72.742	Chlorocebus_sabaeus
ENSOMEG00000015397	xrn1	57	94.805	ENSCHOG00000013961	-	52	94.805	Choloepus_hoffmanni
ENSOMEG00000015397	xrn1	75	51.060	ENSCSAVG00000008584	-	93	50.856	Ciona_savignyi
ENSOMEG00000015397	xrn1	99	72.742	ENSCANG00000037495	XRN1	99	78.219	Colobus_angolensis_palliatus
ENSOMEG00000015397	xrn1	99	72.823	ENSCGRG00001019411	Xrn1	99	78.889	Cricetulus_griseus_chok1gshd
ENSOMEG00000015397	xrn1	99	72.823	ENSCGRG00000012464	Xrn1	99	78.889	Cricetulus_griseus_crigri
ENSOMEG00000015397	xrn1	100	75.322	ENSCSEG00000021285	xrn1	94	99.038	Cynoglossus_semilaevis
ENSOMEG00000015397	xrn1	72	86.182	ENSCVAG00000013089	xrn1	99	86.360	Cyprinodon_variegatus
ENSOMEG00000015397	xrn1	99	80.606	ENSDARG00000091652	xrn1	98	82.911	Danio_rerio
ENSOMEG00000015397	xrn1	99	72.602	ENSDORG00000013833	Xrn1	92	72.602	Dipodomys_ordii
ENSOMEG00000015397	xrn1	75	41.176	FBgn0020261	pcm	72	40.410	Drosophila_melanogaster
ENSOMEG00000015397	xrn1	86	68.468	ENSETEG00000003978	XRN1	88	69.421	Echinops_telfairi
ENSOMEG00000015397	xrn1	100	72.942	ENSEASG00005002687	XRN1	99	78.219	Equus_asinus_asinus
ENSOMEG00000015397	xrn1	100	72.861	ENSECAG00000008301	XRN1	95	72.942	Equus_caballus
ENSOMEG00000015397	xrn1	92	65.591	ENSEEUG00000011323	XRN1	92	65.591	Erinaceus_europaeus
ENSOMEG00000015397	xrn1	99	80.394	ENSELUG00000000169	xrn1	100	71.749	Esox_lucius
ENSOMEG00000015397	xrn1	100	68.562	ENSFCAG00000027589	XRN1	99	79.825	Felis_catus
ENSOMEG00000015397	xrn1	100	72.419	ENSFALG00000007021	XRN1	94	71.262	Ficedula_albicollis
ENSOMEG00000015397	xrn1	100	72.209	ENSFDAG00000020494	XRN1	99	78.537	Fukomys_damarensis
ENSOMEG00000015397	xrn1	93	74.671	ENSGMOG00000006396	xrn1	88	75.247	Gadus_morhua
ENSOMEG00000015397	xrn1	100	72.925	ENSGALG00000002706	XRN1	95	71.673	Gallus_gallus
ENSOMEG00000015397	xrn1	99	86.535	ENSGACG00000014328	xrn1	92	86.535	Gasterosteus_aculeatus
ENSOMEG00000015397	xrn1	93	72.713	ENSGAGG00000017535	XRN1	95	71.240	Gopherus_agassizii
ENSOMEG00000015397	xrn1	99	72.535	ENSGGOG00000008047	XRN1	92	72.616	Gorilla_gorilla
ENSOMEG00000015397	xrn1	99	86.241	ENSHBUG00000005908	xrn1	99	84.240	Haplochromis_burtoni
ENSOMEG00000015397	xrn1	100	72.905	ENSHGLG00000014476	XRN1	99	78.537	Heterocephalus_glaber_female
ENSOMEG00000015397	xrn1	100	72.905	ENSHGLG00100015130	XRN1	99	78.537	Heterocephalus_glaber_male
ENSOMEG00000015397	xrn1	96	82.598	ENSHCOG00000014062	xrn1	99	82.761	Hippocampus_comes
ENSOMEG00000015397	xrn1	99	79.248	ENSIPUG00000015229	xrn1	92	79.268	Ictalurus_punctatus
ENSOMEG00000015397	xrn1	99	72.861	ENSSTOG00000013552	XRN1	99	78.006	Ictidomys_tridecemlineatus
ENSOMEG00000015397	xrn1	97	72.508	ENSJJAG00000010863	Xrn1	99	77.778	Jaculus_jaculus
ENSOMEG00000015397	xrn1	100	84.401	ENSKMAG00000021356	xrn1	95	86.653	Kryptolebias_marmoratus
ENSOMEG00000015397	xrn1	99	86.113	ENSLBEG00000018656	xrn1	97	100.000	Labrus_bergylta
ENSOMEG00000015397	xrn1	100	73.049	ENSLACG00000009020	XRN1	93	72.947	Latimeria_chalumnae
ENSOMEG00000015397	xrn1	100	77.173	ENSLOCG00000007944	xrn1	100	75.520	Lepisosteus_oculatus
ENSOMEG00000015397	xrn1	67	73.251	ENSLAFG00000015426	XRN1	99	73.502	Loxodonta_africana
ENSOMEG00000015397	xrn1	99	72.742	ENSMFAG00000032599	XRN1	93	72.742	Macaca_fascicularis
ENSOMEG00000015397	xrn1	99	72.742	ENSMMUG00000014038	XRN1	93	72.742	Macaca_mulatta
ENSOMEG00000015397	xrn1	99	72.742	ENSMNEG00000034217	XRN1	93	72.498	Macaca_nemestrina
ENSOMEG00000015397	xrn1	100	77.963	ENSMAMG00000013219	xrn1	92	88.136	Mastacembelus_armatus
ENSOMEG00000015397	xrn1	99	88.115	ENSMZEG00005015099	xrn1	94	88.115	Maylandia_zebra
ENSOMEG00000015397	xrn1	98	71.511	ENSMGAG00000006333	XRN1	91	71.511	Meleagris_gallopavo
ENSOMEG00000015397	xrn1	99	73.024	ENSMICG00000048948	XRN1	96	96.117	Microcebus_murinus
ENSOMEG00000015397	xrn1	62	77.848	ENSMOCG00000008665	Xrn1	99	78.537	Microtus_ochrogaster
ENSOMEG00000015397	xrn1	97	73.684	ENSMODG00000021236	XRN1	92	72.101	Monodelphis_domestica
ENSOMEG00000015397	xrn1	99	83.826	ENSMALG00000004098	xrn1	94	83.826	Monopterus_albus
ENSOMEG00000015397	xrn1	96	78.219	MGP_CAROLIEiJ_G0032535	Xrn1	100	92.500	Mus_caroli
ENSOMEG00000015397	xrn1	100	72.942	ENSMUSG00000032410	Xrn1	100	92.500	Mus_musculus
ENSOMEG00000015397	xrn1	99	72.861	MGP_PahariEiJ_G0015404	Xrn1	100	92.500	Mus_pahari
ENSOMEG00000015397	xrn1	100	72.779	MGP_SPRETEiJ_G0033678	Xrn1	100	92.500	Mus_spretus
ENSOMEG00000015397	xrn1	100	73.246	ENSMPUG00000012040	XRN1	96	73.409	Mustela_putorius_furo
ENSOMEG00000015397	xrn1	99	72.949	ENSMLUG00000016885	XRN1	90	72.949	Myotis_lucifugus
ENSOMEG00000015397	xrn1	62	73.726	ENSNGAG00000023964	Xrn1	99	74.682	Nannospalax_galili
ENSOMEG00000015397	xrn1	99	72.698	ENSNLEG00000004726	XRN1	92	72.779	Nomascus_leucogenys
ENSOMEG00000015397	xrn1	71	96.907	ENSMEUG00000014473	-	67	97.087	Notamacropus_eugenii
ENSOMEG00000015397	xrn1	71	67.883	ENSOPRG00000007337	-	72	67.883	Ochotona_princeps
ENSOMEG00000015397	xrn1	99	88.689	ENSONIG00000016673	xrn1	99	85.030	Oreochromis_niloticus
ENSOMEG00000015397	xrn1	91	69.982	ENSOANG00000006735	XRN1	93	69.982	Ornithorhynchus_anatinus
ENSOMEG00000015397	xrn1	99	73.491	ENSOCUG00000001861	XRN1	90	73.654	Oryctolagus_cuniculus
ENSOMEG00000015397	xrn1	100	95.074	ENSORLG00000013005	xrn1	98	93.846	Oryzias_latipes
ENSOMEG00000015397	xrn1	100	94.910	ENSORLG00020005559	xrn1	100	93.550	Oryzias_latipes_hni
ENSOMEG00000015397	xrn1	100	94.828	ENSORLG00015022523	xrn1	100	93.609	Oryzias_latipes_hsok
ENSOMEG00000015397	xrn1	99	70.579	ENSOGAG00000000170	XRN1	92	70.660	Otolemur_garnettii
ENSOMEG00000015397	xrn1	99	72.764	ENSOARG00000006343	XRN1	95	72.764	Ovis_aries
ENSOMEG00000015397	xrn1	99	72.698	ENSPPAG00000010180	XRN1	92	72.779	Pan_paniscus
ENSOMEG00000015397	xrn1	100	73.436	ENSPPRG00000007125	XRN1	95	73.089	Panthera_pardus
ENSOMEG00000015397	xrn1	100	73.436	ENSPTIG00000021081	XRN1	95	73.089	Panthera_tigris_altaica
ENSOMEG00000015397	xrn1	99	72.698	ENSPTRG00000015482	XRN1	92	72.779	Pan_troglodytes
ENSOMEG00000015397	xrn1	99	72.742	ENSPANG00000010638	XRN1	93	72.742	Papio_anubis
ENSOMEG00000015397	xrn1	99	72.639	ENSPSIG00000018050	XRN1	91	72.639	Pelodiscus_sinensis
ENSOMEG00000015397	xrn1	62	85.942	ENSPMGG00000002648	xrn1	99	85.782	Periophthalmus_magnuspinnatus
ENSOMEG00000015397	xrn1	62	77.848	ENSPEMG00000020610	Xrn1	99	78.889	Peromyscus_maniculatus_bairdii
ENSOMEG00000015397	xrn1	70	51.852	ENSPMAG00000002975	xrn1	99	49.916	Petromyzon_marinus
ENSOMEG00000015397	xrn1	100	72.698	ENSPCIG00000028735	XRN1	99	77.813	Phascolarctos_cinereus
ENSOMEG00000015397	xrn1	88	87.186	ENSPFOG00000013932	xrn1	99	82.955	Poecilia_formosa
ENSOMEG00000015397	xrn1	88	87.438	ENSPLAG00000021653	xrn1	99	82.965	Poecilia_latipinna
ENSOMEG00000015397	xrn1	86	87.305	ENSPMEG00000003076	xrn1	95	83.322	Poecilia_mexicana
ENSOMEG00000015397	xrn1	99	86.716	ENSPREG00000021147	xrn1	94	87.531	Poecilia_reticulata
ENSOMEG00000015397	xrn1	99	72.779	ENSPPYG00000014172	XRN1	92	72.528	Pongo_abelii
ENSOMEG00000015397	xrn1	83	79.670	ENSPCAG00000005638	XRN1	91	66.048	Procavia_capensis
ENSOMEG00000015397	xrn1	99	72.698	ENSPCOG00000013089	XRN1	99	78.060	Propithecus_coquereli
ENSOMEG00000015397	xrn1	91	70.736	ENSPVAG00000016265	XRN1	84	86.127	Pteropus_vampyrus
ENSOMEG00000015397	xrn1	99	87.305	ENSPNYG00000010570	xrn1	98	84.827	Pundamilia_nyererei
ENSOMEG00000015397	xrn1	99	76.124	ENSPNAG00000023531	xrn1	100	69.028	Pygocentrus_nattereri
ENSOMEG00000015397	xrn1	99	72.846	ENSRNOG00000042951	Xrn1	90	72.883	Rattus_norvegicus
ENSOMEG00000015397	xrn1	99	72.661	ENSRBIG00000041227	XRN1	93	72.661	Rhinopithecus_bieti
ENSOMEG00000015397	xrn1	72	52.989	YGL173C	XRN1	77	52.989	Saccharomyces_cerevisiae
ENSOMEG00000015397	xrn1	99	73.105	ENSSBOG00000029561	XRN1	92	72.771	Saimiri_boliviensis_boliviensis
ENSOMEG00000015397	xrn1	98	71.963	ENSSHAG00000016207	XRN1	93	71.797	Sarcophilus_harrisii
ENSOMEG00000015397	xrn1	99	79.310	ENSSFOG00015024211	xrn1	92	79.310	Scleropages_formosus
ENSOMEG00000015397	xrn1	99	86.814	ENSSMAG00000016534	xrn1	100	79.225	Scophthalmus_maximus
ENSOMEG00000015397	xrn1	90	87.941	ENSSDUG00000010306	xrn1	97	87.941	Seriola_dumerili
ENSOMEG00000015397	xrn1	99	86.016	ENSSLDG00000021543	xrn1	100	86.453	Seriola_lalandi_dorsalis
ENSOMEG00000015397	xrn1	66	67.938	ENSSARG00000007741	-	75	67.769	Sorex_araneus
ENSOMEG00000015397	xrn1	99	73.426	ENSTGUG00000008498	XRN1	93	72.830	Taeniopygia_guttata
ENSOMEG00000015397	xrn1	99	83.908	ENSTRUG00000004895	xrn1	96	85.169	Takifugu_rubripes
ENSOMEG00000015397	xrn1	99	82.011	ENSTNIG00000017615	xrn1	93	81.581	Tetraodon_nigroviridis
ENSOMEG00000015397	xrn1	73	85.753	ENSTBEG00000003256	XRN1	82	72.045	Tupaia_belangeri
ENSOMEG00000015397	xrn1	100	70.593	ENSTTRG00000012914	XRN1	95	70.512	Tursiops_truncatus
ENSOMEG00000015397	xrn1	100	71.254	ENSUAMG00000001608	XRN1	99	74.525	Ursus_americanus
ENSOMEG00000015397	xrn1	100	73.127	ENSUMAG00000013625	XRN1	96	72.927	Ursus_maritimus
ENSOMEG00000015397	xrn1	100	70.090	ENSVPAG00000004690	XRN1	95	70.147	Vicugna_pacos
ENSOMEG00000015397	xrn1	99	73.187	ENSVVUG00000024461	XRN1	99	78.323	Vulpes_vulpes
ENSOMEG00000015397	xrn1	100	72.478	ENSXETG00000000619	xrn1	99	86.614	Xenopus_tropicalis
ENSOMEG00000015397	xrn1	99	85.795	ENSXCOG00000007917	xrn1	100	77.286	Xiphophorus_couchianus
ENSOMEG00000015397	xrn1	100	79.748	ENSXMAG00000018320	xrn1	98	86.678	Xiphophorus_maculatus