EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSOMEG00000016474 (Gene tree)
Gene ID: 112144230
Gene Symbol: hfm1
Alias: -
Full Name: HFM1%2C ATP dependent DNA helicase homolog
Gene Type: protein_coding
Species: Oryzias_melastigma
Status: putative
Strand: Minus strand
Length: 28970 bases
Position: chrNVQA01000008.1:4746075-4775044
Accession: 112144230
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOMEP00000031550	ResIII	PF04851.15	4.2e-12	1	1
ENSOMEP00000031550	DEAD	PF00270.29	2e-26	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOMET00000022942	-	5775	-	ENSOMEP00000031550	1438 (aa)	XP_024124378	UPI000CF7EE5D

Gene Model

Click here to download ENSOMEG00000016474's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOMEG00000016474's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSOMEG00000016474	hfm1	57	30.833	ENSOMEG00000011834	snrnp200	70	30.833
ENSOMEG00000016474	hfm1	53	33.333	ENSOMEG00000019630	ascc3	63	33.333

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOMEG00000016474	hfm1	90	52.261	ENSG00000162669	HFM1	89	52.261	Homo_sapiens
ENSOMEG00000016474	hfm1	62	79.352	ENSAPOG00000005304	hfm1	99	79.352	Acanthochromis_polyacanthus
ENSOMEG00000016474	hfm1	90	50.802	ENSAMEG00000000432	HFM1	89	51.634	Ailuropoda_melanoleuca
ENSOMEG00000016474	hfm1	74	71.161	ENSACIG00000021553	hfm1	92	71.161	Amphilophus_citrinellus
ENSOMEG00000016474	hfm1	62	80.505	ENSAOCG00000022839	hfm1	99	80.505	Amphiprion_ocellaris
ENSOMEG00000016474	hfm1	62	80.385	ENSAPEG00000014316	hfm1	96	83.671	Amphiprion_percula
ENSOMEG00000016474	hfm1	83	67.093	ENSATEG00000019181	hfm1	99	67.093	Anabas_testudineus
ENSOMEG00000016474	hfm1	68	62.245	ENSAPLG00000013639	HFM1	68	62.245	Anas_platyrhynchos
ENSOMEG00000016474	hfm1	75	58.534	ENSANAG00000029513	HFM1	72	58.534	Aotus_nancymaae
ENSOMEG00000016474	hfm1	65	76.609	ENSACLG00000009033	hfm1	98	78.741	Astatotilapia_calliptera
ENSOMEG00000016474	hfm1	87	57.564	ENSAMXG00000006108	hfm1	92	56.067	Astyanax_mexicanus
ENSOMEG00000016474	hfm1	80	55.772	ENSBTAG00000020856	HFM1	78	55.810	Bos_taurus
ENSOMEG00000016474	hfm1	75	59.120	ENSCJAG00000001843	HFM1	72	59.120	Callithrix_jacchus
ENSOMEG00000016474	hfm1	90	51.116	ENSCAFG00000020187	HFM1	74	58.114	Canis_familiaris
ENSOMEG00000016474	hfm1	83	54.357	ENSTSYG00000014250	HFM1	69	61.690	Carlito_syrichta
ENSOMEG00000016474	hfm1	68	62.041	ENSCPOG00000007421	HFM1	69	62.041	Cavia_porcellus
ENSOMEG00000016474	hfm1	92	52.126	ENSCCAG00000033206	HFM1	74	58.148	Cebus_capucinus
ENSOMEG00000016474	hfm1	83	54.618	ENSCATG00000030987	HFM1	85	54.618	Cercocebus_atys
ENSOMEG00000016474	hfm1	75	57.748	ENSCLAG00000005173	HFM1	73	57.748	Chinchilla_lanigera
ENSOMEG00000016474	hfm1	64	59.236	ENSCGRG00001016995	Hfm1	66	58.966	Cricetulus_griseus_chok1gshd
ENSOMEG00000016474	hfm1	68	61.038	ENSCGRG00000017181	Hfm1	72	57.261	Cricetulus_griseus_crigri
ENSOMEG00000016474	hfm1	67	72.857	ENSCSEG00000017659	hfm1	90	73.163	Cynoglossus_semilaevis
ENSOMEG00000016474	hfm1	75	60.672	ENSDARG00000104288	hfm1	97	60.672	Danio_rerio
ENSOMEG00000016474	hfm1	100	47.355	ENSDNOG00000004776	HFM1	90	50.661	Dasypus_novemcinctus
ENSOMEG00000016474	hfm1	75	56.573	ENSDORG00000014661	Hfm1	73	56.573	Dipodomys_ordii
ENSOMEG00000016474	hfm1	73	57.321	ENSEASG00005015424	HFM1	96	57.321	Equus_asinus_asinus
ENSOMEG00000016474	hfm1	100	48.102	ENSECAG00000024039	HFM1	90	51.248	Equus_caballus
ENSOMEG00000016474	hfm1	62	73.981	ENSELUG00000018944	hfm1	99	73.981	Esox_lucius
ENSOMEG00000016474	hfm1	90	51.531	ENSFCAG00000029116	HFM1	72	58.592	Felis_catus
ENSOMEG00000016474	hfm1	67	62.819	ENSFALG00000001781	HFM1	89	51.729	Ficedula_albicollis
ENSOMEG00000016474	hfm1	78	56.206	ENSFDAG00000020816	HFM1	76	56.206	Fukomys_damarensis
ENSOMEG00000016474	hfm1	66	68.366	ENSGMOG00000017436	hfm1	99	68.366	Gadus_morhua
ENSOMEG00000016474	hfm1	74	69.944	ENSGAFG00000018093	hfm1	100	79.663	Gambusia_affinis
ENSOMEG00000016474	hfm1	66	74.059	ENSGACG00000015686	hfm1	99	74.059	Gasterosteus_aculeatus
ENSOMEG00000016474	hfm1	90	51.902	ENSGGOG00000038524	HFM1	72	59.012	Gorilla_gorilla
ENSOMEG00000016474	hfm1	65	77.682	ENSHBUG00000007309	hfm1	95	71.536	Haplochromis_burtoni
ENSOMEG00000016474	hfm1	56	77.027	ENSHCOG00000019632	hfm1	97	77.027	Hippocampus_comes
ENSOMEG00000016474	hfm1	65	69.403	ENSIPUG00000017020	hfm1	92	70.922	Ictalurus_punctatus
ENSOMEG00000016474	hfm1	81	53.200	ENSJJAG00000017198	Hfm1	70	60.548	Jaculus_jaculus
ENSOMEG00000016474	hfm1	62	76.490	ENSKMAG00000002282	hfm1	91	76.490	Kryptolebias_marmoratus
ENSOMEG00000016474	hfm1	75	67.626	ENSLBEG00000006759	hfm1	97	78.369	Labrus_bergylta
ENSOMEG00000016474	hfm1	66	64.767	ENSLACG00000010698	HFM1	99	60.482	Latimeria_chalumnae
ENSOMEG00000016474	hfm1	76	63.620	ENSLOCG00000004931	hfm1	98	63.620	Lepisosteus_oculatus
ENSOMEG00000016474	hfm1	83	52.275	ENSMFAG00000003649	HFM1	85	52.275	Macaca_fascicularis
ENSOMEG00000016474	hfm1	83	54.618	ENSMMUG00000006819	HFM1	85	54.618	Macaca_mulatta
ENSOMEG00000016474	hfm1	54	84.872	ENSMAMG00000004623	hfm1	97	79.782	Mastacembelus_armatus
ENSOMEG00000016474	hfm1	65	76.502	ENSMZEG00005004679	hfm1	98	78.622	Maylandia_zebra
ENSOMEG00000016474	hfm1	53	65.800	ENSMGAG00000008437	HFM1	95	65.800	Meleagris_gallopavo
ENSOMEG00000016474	hfm1	100	47.098	ENSMAUG00000018858	Hfm1	72	57.604	Mesocricetus_auratus
ENSOMEG00000016474	hfm1	83	53.953	ENSMICG00000037935	HFM1	84	53.953	Microcebus_murinus
ENSOMEG00000016474	hfm1	77	55.882	ENSMOCG00000014812	Hfm1	75	55.971	Microtus_ochrogaster
ENSOMEG00000016474	hfm1	66	78.588	ENSMMOG00000006148	hfm1	99	78.588	Mola_mola
ENSOMEG00000016474	hfm1	65	78.028	ENSMALG00000002401	hfm1	100	78.331	Monopterus_albus
ENSOMEG00000016474	hfm1	95	48.184	MGP_CAROLIEiJ_G0027496	Hfm1	75	63.636	Mus_caroli
ENSOMEG00000016474	hfm1	84	52.729	ENSMUSG00000043410	Hfm1	72	57.880	Mus_musculus
ENSOMEG00000016474	hfm1	75	57.948	MGP_PahariEiJ_G0017268	Hfm1	74	57.470	Mus_pahari
ENSOMEG00000016474	hfm1	99	46.071	MGP_SPRETEiJ_G0028495	Hfm1	72	58.020	Mus_spretus
ENSOMEG00000016474	hfm1	90	51.462	ENSMPUG00000004594	HFM1	89	51.389	Mustela_putorius_furo
ENSOMEG00000016474	hfm1	90	50.826	ENSMLUG00000010200	HFM1	88	50.901	Myotis_lucifugus
ENSOMEG00000016474	hfm1	73	67.625	ENSNBRG00000002910	hfm1	97	79.369	Neolamprologus_brichardi
ENSOMEG00000016474	hfm1	90	50.332	ENSNLEG00000010285	HFM1	89	50.332	Nomascus_leucogenys
ENSOMEG00000016474	hfm1	68	58.000	ENSMEUG00000015788	HFM1	66	58.000	Notamacropus_eugenii
ENSOMEG00000016474	hfm1	59	61.059	ENSOPRG00000013916	HFM1	60	61.059	Ochotona_princeps
ENSOMEG00000016474	hfm1	74	72.761	ENSONIG00000010590	hfm1	100	72.601	Oreochromis_niloticus
ENSOMEG00000016474	hfm1	57	91.759	ENSORLG00000026844	hfm1	100	91.759	Oryzias_latipes
ENSOMEG00000016474	hfm1	83	82.000	ENSORLG00020002951	hfm1	97	81.758	Oryzias_latipes_hni
ENSOMEG00000016474	hfm1	83	53.312	ENSOGAG00000032369	HFM1	99	53.312	Otolemur_garnettii
ENSOMEG00000016474	hfm1	95	49.859	ENSOARG00000015812	HFM1	78	55.915	Ovis_aries
ENSOMEG00000016474	hfm1	90	52.406	ENSPPAG00000024582	HFM1	97	52.480	Pan_paniscus
ENSOMEG00000016474	hfm1	90	51.680	ENSPPRG00000003270	HFM1	72	58.592	Panthera_pardus
ENSOMEG00000016474	hfm1	75	58.684	ENSPTIG00000018881	HFM1	72	58.684	Panthera_tigris_altaica
ENSOMEG00000016474	hfm1	90	52.332	ENSPTRG00000000948	HFM1	89	52.332	Pan_troglodytes
ENSOMEG00000016474	hfm1	83	54.538	ENSPANG00000009838	HFM1	85	54.538	Papio_anubis
ENSOMEG00000016474	hfm1	62	69.888	ENSPKIG00000003810	hfm1	96	70.277	Paramormyrops_kingsleyae
ENSOMEG00000016474	hfm1	57	74.909	ENSPMGG00000011059	hfm1	99	74.909	Periophthalmus_magnuspinnatus
ENSOMEG00000016474	hfm1	90	49.815	ENSPEMG00000022852	Hfm1	72	57.248	Peromyscus_maniculatus_bairdii
ENSOMEG00000016474	hfm1	75	58.318	ENSPCIG00000014233	HFM1	73	58.318	Phascolarctos_cinereus
ENSOMEG00000016474	hfm1	74	71.814	ENSPFOG00000017194	hfm1	99	71.814	Poecilia_formosa
ENSOMEG00000016474	hfm1	74	71.001	ENSPLAG00000000571	hfm1	92	71.107	Poecilia_latipinna
ENSOMEG00000016474	hfm1	74	71.255	ENSPMEG00000019475	hfm1	93	71.255	Poecilia_mexicana
ENSOMEG00000016474	hfm1	74	71.523	ENSPREG00000007803	hfm1	100	80.000	Poecilia_reticulata
ENSOMEG00000016474	hfm1	90	52.113	ENSPPYG00000001163	HFM1	72	59.012	Pongo_abelii
ENSOMEG00000016474	hfm1	68	56.181	ENSPVAG00000009713	HFM1	69	56.181	Pteropus_vampyrus
ENSOMEG00000016474	hfm1	65	76.395	ENSPNYG00000001795	hfm1	98	78.622	Pundamilia_nyererei
ENSOMEG00000016474	hfm1	63	71.462	ENSPNAG00000010865	hfm1	84	71.462	Pygocentrus_nattereri
ENSOMEG00000016474	hfm1	75	57.380	ENSRNOG00000023299	Hfm1	72	57.380	Rattus_norvegicus
ENSOMEG00000016474	hfm1	83	54.647	ENSRROG00000045569	HFM1	85	54.647	Rhinopithecus_roxellana
ENSOMEG00000016474	hfm1	68	63.131	ENSSBOG00000027456	HFM1	69	63.131	Saimiri_boliviensis_boliviensis
ENSOMEG00000016474	hfm1	85	59.294	ENSSFOG00015020129	hfm1	91	56.647	Scleropages_formosus
ENSOMEG00000016474	hfm1	62	79.306	ENSSMAG00000006907	hfm1	94	74.438	Scophthalmus_maximus
ENSOMEG00000016474	hfm1	63	77.560	ENSSDUG00000011424	hfm1	100	77.560	Seriola_dumerili
ENSOMEG00000016474	hfm1	64	80.700	ENSSLDG00000016386	hfm1	98	80.700	Seriola_lalandi_dorsalis
ENSOMEG00000016474	hfm1	63	79.741	ENSSPAG00000001023	hfm1	100	79.741	Stegastes_partitus
ENSOMEG00000016474	hfm1	84	53.676	ENSSSCG00000006912	HFM1	79	58.732	Sus_scrofa
ENSOMEG00000016474	hfm1	66	63.064	ENSTGUG00000006172	HFM1	99	63.064	Taeniopygia_guttata
ENSOMEG00000016474	hfm1	68	61.866	ENSTTRG00000013933	HFM1	73	58.103	Tursiops_truncatus
ENSOMEG00000016474	hfm1	75	56.325	ENSVPAG00000011331	HFM1	72	56.325	Vicugna_pacos
ENSOMEG00000016474	hfm1	73	57.498	ENSVVUG00000020760	HFM1	98	57.498	Vulpes_vulpes
ENSOMEG00000016474	hfm1	70	75.521	ENSXMAG00000004178	hfm1	100	75.521	Xiphophorus_maculatus