EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSOMEG00000017711 (Gene tree)
Gene ID: 112140724
Gene Symbol: -
Alias: -
Full Name: serine/arginine-rich splicing factor 1B
Gene Type: protein_coding
Species: Oryzias_melastigma
Status: putative
Strand: Plus strand
Length: 4182 bases
Position: chrNVQA01000005.1:12144789-12148970
Accession: 112140724
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOMEP00000032334	RRM_1	PF00076.22	1.6e-33	1	2
ENSOMEP00000032334	RRM_1	PF00076.22	1.6e-33	2	2
ENSOMEP00000032335	RRM_1	PF00076.22	1.9e-33	1	2
ENSOMEP00000032335	RRM_1	PF00076.22	1.9e-33	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOMET00000024434	-	1924	-	ENSOMEP00000032335	263 (aa)	XP_024119501	UPI000CF801B3
ENSOMET00000024432	-	1009	-	ENSOMEP00000032334	256 (aa)	-	-

Gene Model

Click here to download ENSOMEG00000017711's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOMEG00000017711's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSOMEG00000017711	-	71	45.405	ENSOMEG00000005541	srsf4	58	41.204
ENSOMEG00000017711	-	67	46.243	ENSOMEG00000000628	srsf5a	93	36.576
ENSOMEG00000017711	-	69	85.714	ENSOMEG00000004106	srsf1a	71	84.066
ENSOMEG00000017711	-	71	66.489	ENSOMEG00000002601	srsf9	74	65.426
ENSOMEG00000017711	-	76	34.975	ENSOMEG00000006001	srsf6a	52	37.619

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOMEG00000017711	-	75	93.229	ENSACIG00000002623	-	98	93.229	Amphilophus_citrinellus
ENSOMEG00000017711	-	76	86.935	ENSACLG00000005676	-	78	85.427	Astatotilapia_calliptera
ENSOMEG00000017711	-	98	95.785	ENSACLG00000021693	-	100	95.785	Astatotilapia_calliptera
ENSOMEG00000017711	-	91	59.426	WBGene00004700	rsp-3	75	65.128	Caenorhabditis_elegans
ENSOMEG00000017711	-	52	64.964	ENSCING00000000257	-	84	56.291	Ciona_intestinalis
ENSOMEG00000017711	-	71	72.340	ENSCING00000007375	-	76	70.213	Ciona_intestinalis
ENSOMEG00000017711	-	76	66.495	ENSCSAVG00000006093	-	91	68.617	Ciona_savignyi
ENSOMEG00000017711	-	52	60.584	ENSCSAVG00000003567	-	89	51.592	Ciona_savignyi
ENSOMEG00000017711	-	71	68.085	FBgn0283477	SF2	73	67.553	Drosophila_melanogaster
ENSOMEG00000017711	-	95	71.315	ENSEBUG00000009582	-	97	71.369	Eptatretus_burgeri
ENSOMEG00000017711	-	76	94.030	ENSFHEG00000017425	-	98	93.122	Fundulus_heteroclitus
ENSOMEG00000017711	-	74	87.302	ENSGMOG00000010606	-	97	86.772	Gadus_morhua
ENSOMEG00000017711	-	100	92.188	ENSGAFG00000000609	-	80	95.025	Gambusia_affinis
ENSOMEG00000017711	-	76	87.437	ENSGAFG00000012721	-	78	85.930	Gambusia_affinis
ENSOMEG00000017711	-	73	87.097	ENSGACG00000011094	-	96	86.022	Gasterosteus_aculeatus
ENSOMEG00000017711	-	51	63.077	ENSHBUG00000015600	-	92	58.209	Haplochromis_burtoni
ENSOMEG00000017711	-	98	96.154	ENSHBUG00000015576	-	100	96.154	Haplochromis_burtoni
ENSOMEG00000017711	-	76	82.673	ENSHCOG00000008016	-	77	82.178	Hippocampus_comes
ENSOMEG00000017711	-	94	82.800	ENSMFAG00000034223	-	65	86.000	Macaca_fascicularis
ENSOMEG00000017711	-	98	96.139	ENSMZEG00005019071	-	100	96.139	Maylandia_zebra
ENSOMEG00000017711	-	76	86.935	ENSMZEG00005007947	-	78	85.427	Maylandia_zebra
ENSOMEG00000017711	-	77	90.594	ENSMMOG00000018849	-	79	90.594	Mola_mola
ENSOMEG00000017711	-	98	95.785	ENSNBRG00000008134	-	100	95.785	Neolamprologus_brichardi
ENSOMEG00000017711	-	76	86.935	ENSNBRG00000019981	-	78	85.427	Neolamprologus_brichardi
ENSOMEG00000017711	-	67	64.327	ENSOPRG00000004745	-	96	63.743	Ochotona_princeps
ENSOMEG00000017711	-	95	95.635	ENSONIG00000004857	-	99	95.635	Oreochromis_niloticus
ENSOMEG00000017711	-	51	86.232	ENSOANG00000007320	-	53	96.512	Ornithorhynchus_anatinus
ENSOMEG00000017711	-	70	52.247	ENSOCUG00000026856	-	96	54.494	Oryctolagus_cuniculus
ENSOMEG00000017711	-	100	97.656	ENSORLG00000005314	-	100	97.656	Oryzias_latipes
ENSOMEG00000017711	-	100	97.266	ENSORLG00015015497	-	100	97.266	Oryzias_latipes_hsok
ENSOMEG00000017711	-	73	86.631	ENSPLAG00000019613	-	71	86.022	Poecilia_latipinna
ENSOMEG00000017711	-	76	85.644	ENSPLAG00000019553	-	91	85.638	Poecilia_latipinna
ENSOMEG00000017711	-	78	93.659	ENSPREG00000016792	-	80	94.030	Poecilia_reticulata
ENSOMEG00000017711	-	98	95.785	ENSPNYG00000020651	-	100	95.785	Pundamilia_nyererei
ENSOMEG00000017711	-	76	86.935	ENSPNYG00000017115	-	78	85.427	Pundamilia_nyererei
ENSOMEG00000017711	-	81	90.094	ENSSFOG00015004989	-	71	88.000	Scleropages_formosus
ENSOMEG00000017711	-	76	92.823	ENSSDUG00000003887	-	79	91.388	Seriola_dumerili
ENSOMEG00000017711	-	77	84.653	ENSTRUG00000017058	-	80	83.663	Takifugu_rubripes
ENSOMEG00000017711	-	77	81.773	ENSTNIG00000009993	-	81	80.788	Tetraodon_nigroviridis
ENSOMEG00000017711	-	91	87.917	ENSXCOG00000017888	-	80	94.527	Xiphophorus_couchianus
ENSOMEG00000017711	-	76	85.644	ENSXCOG00000009643	-	78	85.641	Xiphophorus_couchianus
ENSOMEG00000017711	-	100	91.797	ENSXMAG00000010797	-	80	94.527	Xiphophorus_maculatus