EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSOMEG00000017952 (Gene tree)
Gene ID: 112157154
Gene Symbol: tnrc6c2
Alias: -
Full Name: trinucleotide repeat-containing gene 6C protein-like
Gene Type: protein_coding
Species: Oryzias_melastigma
Status: putative
Strand: Plus strand
Length: 40736 bases
Position: chrNVQA01000022.1:9089134-9129869
Accession: 112157154
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOMEP00000016288	RRM_1	PF00076.22	0.00018	1	1
ENSOMEP00000016221	RRM_1	PF00076.22	0.00019	1	1
ENSOMEP00000016317	RRM_1	PF00076.22	0.00019	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOMET00000024746	-	6670	-	ENSOMEP00000016317	1915 (aa)	XP_024145501	UPI000CF813A8
ENSOMET00000024715	-	6553	-	ENSOMEP00000016288	1876 (aa)	XP_024145503	UPI000CF80B2C
ENSOMET00000024705	-	6196	-	ENSOMEP00000016221	1915 (aa)	XP_024145501	UPI000CF813A8

Gene Model

Click here to download ENSOMEG00000017952's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOMEG00000017952's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSOMEG00000017952	tnrc6c2	81	58.126	ENSOMEG00000000357	tnrc6c1	60	66.933

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOMEG00000017952	tnrc6c2	99	83.112	ENSAOCG00000017648	tnrc6c2	100	82.710	Amphiprion_ocellaris
ENSOMEG00000017952	tnrc6c2	83	86.740	ENSATEG00000003656	tnrc6c2	57	86.740	Anabas_testudineus
ENSOMEG00000017952	tnrc6c2	99	82.139	ENSACLG00000006469	tnrc6c2	99	82.460	Astatotilapia_calliptera
ENSOMEG00000017952	tnrc6c2	87	57.451	ENSAMXG00000009579	tnrc6c2	100	56.732	Astyanax_mexicanus
ENSOMEG00000017952	tnrc6c2	91	56.913	ENSDARG00000103851	tnrc6c2	100	56.548	Danio_rerio
ENSOMEG00000017952	tnrc6c2	83	54.634	ENSELUG00000008149	-	100	51.461	Esox_lucius
ENSOMEG00000017952	tnrc6c2	87	61.820	ENSELUG00000007206	tnrc6c2	100	61.133	Esox_lucius
ENSOMEG00000017952	tnrc6c2	92	80.681	ENSFHEG00000003901	tnrc6c2	100	82.813	Fundulus_heteroclitus
ENSOMEG00000017952	tnrc6c2	98	72.004	ENSGACG00000019401	tnrc6c2	99	71.937	Gasterosteus_aculeatus
ENSOMEG00000017952	tnrc6c2	99	82.362	ENSHBUG00000018310	tnrc6c2	99	82.523	Haplochromis_burtoni
ENSOMEG00000017952	tnrc6c2	99	74.284	ENSHCOG00000017802	tnrc6c2	100	73.803	Hippocampus_comes
ENSOMEG00000017952	tnrc6c2	87	53.619	ENSIPUG00000022767	tnrc6c2	100	52.232	Ictalurus_punctatus
ENSOMEG00000017952	tnrc6c2	87	82.939	ENSMAMG00000001718	tnrc6c2	100	83.424	Mastacembelus_armatus
ENSOMEG00000017952	tnrc6c2	99	82.193	ENSMZEG00005023905	tnrc6c2	99	82.513	Maylandia_zebra
ENSOMEG00000017952	tnrc6c2	87	81.774	ENSMALG00000020932	tnrc6c2	100	81.955	Monopterus_albus
ENSOMEG00000017952	tnrc6c2	83	87.361	ENSNBRG00000000452	tnrc6c2	57	87.583	Neolamprologus_brichardi
ENSOMEG00000017952	tnrc6c2	85	80.201	ENSONIG00000018123	tnrc6c2	100	81.779	Oreochromis_niloticus
ENSOMEG00000017952	tnrc6c2	100	94.995	ENSORLG00000003327	tnrc6c2	100	94.575	Oryzias_latipes
ENSOMEG00000017952	tnrc6c2	100	94.731	ENSORLG00020010730	tnrc6c2	100	94.575	Oryzias_latipes_hni
ENSOMEG00000017952	tnrc6c2	100	95.900	ENSORLG00015009232	tnrc6c2	100	95.900	Oryzias_latipes_hsok
ENSOMEG00000017952	tnrc6c2	91	76.471	ENSPFOG00000011590	tnrc6c2	99	78.367	Poecilia_formosa
ENSOMEG00000017952	tnrc6c2	87	77.075	ENSPLAG00000006992	tnrc6c2	100	78.746	Poecilia_latipinna
ENSOMEG00000017952	tnrc6c2	99	80.792	ENSPMEG00000012946	tnrc6c2	100	80.902	Poecilia_mexicana
ENSOMEG00000017952	tnrc6c2	87	77.906	ENSPREG00000015823	tnrc6c2	100	77.966	Poecilia_reticulata
ENSOMEG00000017952	tnrc6c2	87	83.495	ENSPNYG00000002582	tnrc6c2	100	83.859	Pundamilia_nyererei
ENSOMEG00000017952	tnrc6c2	87	57.262	ENSPNAG00000026838	tnrc6c2	100	58.037	Pygocentrus_nattereri
ENSOMEG00000017952	tnrc6c2	87	80.363	ENSSMAG00000015145	tnrc6c2	100	80.725	Scophthalmus_maximus
ENSOMEG00000017952	tnrc6c2	87	84.307	ENSSDUG00000020741	tnrc6c2	100	84.246	Seriola_dumerili
ENSOMEG00000017952	tnrc6c2	87	84.246	ENSSLDG00000002077	tnrc6c2	100	84.185	Seriola_lalandi_dorsalis
ENSOMEG00000017952	tnrc6c2	99	83.493	ENSSPAG00000013052	tnrc6c2	100	84.044	Stegastes_partitus
ENSOMEG00000017952	tnrc6c2	84	82.127	ENSTNIG00000004178	tnrc6c2	94	83.461	Tetraodon_nigroviridis
ENSOMEG00000017952	tnrc6c2	87	78.461	ENSXCOG00000013252	tnrc6c2	100	79.296	Xiphophorus_couchianus
ENSOMEG00000017952	tnrc6c2	87	83.191	ENSXMAG00000006739	tnrc6c2	100	83.557	Xiphophorus_maculatus