EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSOMEG00000019313 (Gene tree)
Gene ID: 112163070
Gene Symbol: sbno1
Alias: -
Full Name: strawberry notch homolog 1
Gene Type: protein_coding
Species: Oryzias_melastigma
Status: putative
Strand: Plus strand
Length: 17115 bases
Position: chrNVQA01000031.1:2344755-2361869
Accession: 112163070
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOMEP00000017617	ResIII	PF04851.15	8.7e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOMET00000034904	-	6638	-	ENSOMEP00000017617	1396 (aa)	XP_024154960	UPI000CF7E645

Gene Model

Click here to download ENSOMEG00000019313's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOMEG00000019313's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSOMEG00000019313	sbno1	68	64.399	ENSOMEG00000000359	si:ch73-63e15.2	62	64.399

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOMEG00000019313	sbno1	99	74.912	ENSG00000139697	SBNO1	99	75.053	Homo_sapiens
ENSOMEG00000019313	sbno1	82	93.200	ENSAPOG00000003196	sbno1	98	93.374	Acanthochromis_polyacanthus
ENSOMEG00000019313	sbno1	99	75.316	ENSAMEG00000015151	SBNO1	99	75.035	Ailuropoda_melanoleuca
ENSOMEG00000019313	sbno1	99	86.861	ENSACIG00000008088	sbno1	99	86.870	Amphilophus_citrinellus
ENSOMEG00000019313	sbno1	99	90.086	ENSAOCG00000014859	sbno1	98	90.157	Amphiprion_ocellaris
ENSOMEG00000019313	sbno1	99	90.086	ENSAPEG00000006069	sbno1	98	90.157	Amphiprion_percula
ENSOMEG00000019313	sbno1	100	89.631	ENSATEG00000006667	sbno1	100	89.560	Anabas_testudineus
ENSOMEG00000019313	sbno1	98	75.556	ENSAPLG00000015674	SBNO1	99	75.760	Anas_platyrhynchos
ENSOMEG00000019313	sbno1	98	75.287	ENSACAG00000015441	SBNO1	88	74.399	Anolis_carolinensis
ENSOMEG00000019313	sbno1	94	82.878	ENSANAG00000029958	-	99	80.986	Aotus_nancymaae
ENSOMEG00000019313	sbno1	99	84.648	ENSACLG00000024913	sbno1	99	85.090	Astatotilapia_calliptera
ENSOMEG00000019313	sbno1	100	81.721	ENSAMXG00000019473	sbno1	100	81.805	Astyanax_mexicanus
ENSOMEG00000019313	sbno1	99	75.551	ENSBTAG00000020505	SBNO1	99	75.906	Bos_taurus
ENSOMEG00000019313	sbno1	99	75.335	ENSCJAG00000016599	SBNO1	99	75.405	Callithrix_jacchus
ENSOMEG00000019313	sbno1	99	75.316	ENSCAFG00000007503	SBNO1	97	83.730	Canis_familiaris
ENSOMEG00000019313	sbno1	95	80.762	ENSCAFG00020015363	SBNO1	99	80.762	Canis_lupus_dingo
ENSOMEG00000019313	sbno1	99	74.947	ENSCHIG00000008382	SBNO1	99	83.303	Capra_hircus
ENSOMEG00000019313	sbno1	99	75.441	ENSTSYG00000012749	SBNO1	99	76.321	Carlito_syrichta
ENSOMEG00000019313	sbno1	96	76.832	ENSCAPG00000000384	SBNO1	99	83.303	Cavia_aperea
ENSOMEG00000019313	sbno1	99	75.599	ENSCPOG00000008109	SBNO1	99	83.303	Cavia_porcellus
ENSOMEG00000019313	sbno1	99	71.500	ENSCCAG00000035316	SBNO1	99	71.739	Cebus_capucinus
ENSOMEG00000019313	sbno1	99	74.223	ENSCATG00000008239	SBNO1	99	82.703	Cercocebus_atys
ENSOMEG00000019313	sbno1	99	75.388	ENSCLAG00000008995	SBNO1	99	83.303	Chinchilla_lanigera
ENSOMEG00000019313	sbno1	82	81.756	ENSCSAG00000002064	SBNO1	99	82.014	Chlorocebus_sabaeus
ENSOMEG00000019313	sbno1	99	69.845	ENSCHOG00000008814	SBNO1	99	69.915	Choloepus_hoffmanni
ENSOMEG00000019313	sbno1	98	75.036	ENSCPBG00000025968	SBNO1	98	75.035	Chrysemys_picta_bellii
ENSOMEG00000019313	sbno1	99	72.011	ENSCANG00000042688	-	99	71.921	Colobus_angolensis_palliatus
ENSOMEG00000019313	sbno1	95	82.033	ENSCGRG00001017470	Sbno1	99	82.033	Cricetulus_griseus_chok1gshd
ENSOMEG00000019313	sbno1	95	82.033	ENSCGRG00000004756	Sbno1	99	82.033	Cricetulus_griseus_crigri
ENSOMEG00000019313	sbno1	99	87.571	ENSCSEG00000011919	sbno1	99	87.429	Cynoglossus_semilaevis
ENSOMEG00000019313	sbno1	100	88.976	ENSCVAG00000007038	sbno1	100	89.047	Cyprinodon_variegatus
ENSOMEG00000019313	sbno1	100	80.583	ENSDARG00000099080	sbno1	100	80.952	Danio_rerio
ENSOMEG00000019313	sbno1	99	77.820	ENSDNOG00000017147	SBNO1	95	80.279	Dasypus_novemcinctus
ENSOMEG00000019313	sbno1	99	68.320	ENSDORG00000015261	Sbno1	99	80.738	Dipodomys_ordii
ENSOMEG00000019313	sbno1	93	72.152	ENSETEG00000005620	SBNO1	93	72.152	Echinops_telfairi
ENSOMEG00000019313	sbno1	75	61.610	ENSEBUG00000013823	sbno1	77	70.539	Eptatretus_burgeri
ENSOMEG00000019313	sbno1	51	74.028	ENSEASG00005012595	-	92	74.131	Equus_asinus_asinus
ENSOMEG00000019313	sbno1	99	75.351	ENSECAG00000006127	SBNO1	99	75.997	Equus_caballus
ENSOMEG00000019313	sbno1	80	77.778	ENSEEUG00000003793	SBNO1	77	77.778	Erinaceus_europaeus
ENSOMEG00000019313	sbno1	99	82.798	ENSELUG00000002886	sbno1	99	83.321	Esox_lucius
ENSOMEG00000019313	sbno1	99	75.474	ENSFCAG00000015331	SBNO1	99	75.193	Felis_catus
ENSOMEG00000019313	sbno1	98	75.270	ENSFALG00000009273	SBNO1	99	75.760	Ficedula_albicollis
ENSOMEG00000019313	sbno1	94	80.328	ENSFDAG00000014232	SBNO1	99	78.521	Fukomys_damarensis
ENSOMEG00000019313	sbno1	100	88.905	ENSFHEG00000007360	sbno1	100	89.047	Fundulus_heteroclitus
ENSOMEG00000019313	sbno1	95	84.552	ENSGMOG00000018229	sbno1	99	83.961	Gadus_morhua
ENSOMEG00000019313	sbno1	88	75.278	ENSGALG00000003392	SBNO1	99	75.835	Gallus_gallus
ENSOMEG00000019313	sbno1	100	89.110	ENSGAFG00000003960	sbno1	100	89.110	Gambusia_affinis
ENSOMEG00000019313	sbno1	95	87.669	ENSGACG00000015633	sbno1	99	87.763	Gasterosteus_aculeatus
ENSOMEG00000019313	sbno1	98	74.709	ENSGAGG00000001065	SBNO1	99	82.060	Gopherus_agassizii
ENSOMEG00000019313	sbno1	99	75.320	ENSGGOG00000015000	SBNO1	99	83.122	Gorilla_gorilla
ENSOMEG00000019313	sbno1	99	78.597	ENSHBUG00000011910	sbno1	99	79.041	Haplochromis_burtoni
ENSOMEG00000019313	sbno1	94	83.424	ENSHGLG00000014165	-	99	82.914	Heterocephalus_glaber_female
ENSOMEG00000019313	sbno1	92	93.069	ENSHCOG00000003246	sbno1	95	93.069	Hippocampus_comes
ENSOMEG00000019313	sbno1	100	81.818	ENSIPUG00000015830	Sbno1	98	82.358	Ictalurus_punctatus
ENSOMEG00000019313	sbno1	99	75.747	ENSSTOG00000023221	SBNO1	99	83.303	Ictidomys_tridecemlineatus
ENSOMEG00000019313	sbno1	99	74.982	ENSJJAG00000001741	Sbno1	99	79.673	Jaculus_jaculus
ENSOMEG00000019313	sbno1	100	88.549	ENSKMAG00000009696	sbno1	100	89.118	Kryptolebias_marmoratus
ENSOMEG00000019313	sbno1	99	87.989	ENSLBEG00000007623	sbno1	99	88.486	Labrus_bergylta
ENSOMEG00000019313	sbno1	99	72.187	ENSLACG00000017227	SBNO1	99	74.661	Latimeria_chalumnae
ENSOMEG00000019313	sbno1	99	81.117	ENSLOCG00000005725	sbno1	97	80.905	Lepisosteus_oculatus
ENSOMEG00000019313	sbno1	99	74.719	ENSLAFG00000002135	SBNO1	99	74.684	Loxodonta_africana
ENSOMEG00000019313	sbno1	99	74.912	ENSMFAG00000031429	SBNO1	99	80.072	Macaca_fascicularis
ENSOMEG00000019313	sbno1	99	74.982	ENSMMUG00000011496	SBNO1	99	80.072	Macaca_mulatta
ENSOMEG00000019313	sbno1	99	74.751	ENSMLEG00000033260	SBNO1	99	83.122	Mandrillus_leucophaeus
ENSOMEG00000019313	sbno1	99	90.293	ENSMAMG00000005473	sbno1	99	90.150	Mastacembelus_armatus
ENSOMEG00000019313	sbno1	98	75.520	ENSMGAG00000003274	SBNO1	99	75.918	Meleagris_gallopavo
ENSOMEG00000019313	sbno1	50	73.625	ENSMAUG00000004834	-	99	74.085	Mesocricetus_auratus
ENSOMEG00000019313	sbno1	94	79.964	ENSMICG00000006573	-	99	78.169	Microcebus_murinus
ENSOMEG00000019313	sbno1	99	72.663	ENSMOCG00000009390	Sbno1	99	82.759	Microtus_ochrogaster
ENSOMEG00000019313	sbno1	99	82.761	ENSMMOG00000008691	sbno1	99	83.560	Mola_mola
ENSOMEG00000019313	sbno1	99	74.470	ENSMODG00000012470	SBNO1	98	74.929	Monodelphis_domestica
ENSOMEG00000019313	sbno1	99	89.751	ENSMALG00000001056	sbno1	99	89.537	Monopterus_albus
ENSOMEG00000019313	sbno1	99	75.212	MGP_CAROLIEiJ_G0027749	Sbno1	95	91.228	Mus_caroli
ENSOMEG00000019313	sbno1	99	74.702	ENSMUSG00000038095	Sbno1	94	91.228	Mus_musculus
ENSOMEG00000019313	sbno1	99	75.193	MGP_PahariEiJ_G0024329	Sbno1	95	91.228	Mus_pahari
ENSOMEG00000019313	sbno1	99	75.159	MGP_SPRETEiJ_G0028747	Sbno1	95	91.228	Mus_spretus
ENSOMEG00000019313	sbno1	99	75.882	ENSMPUG00000001658	SBNO1	99	75.512	Mustela_putorius_furo
ENSOMEG00000019313	sbno1	99	74.860	ENSMLUG00000017159	SBNO1	99	74.772	Myotis_lucifugus
ENSOMEG00000019313	sbno1	99	75.035	ENSNGAG00000012620	Sbno1	98	83.858	Nannospalax_galili
ENSOMEG00000019313	sbno1	99	85.438	ENSNBRG00000019189	sbno1	99	85.806	Neolamprologus_brichardi
ENSOMEG00000019313	sbno1	99	72.443	ENSNLEG00000001502	SBNO1	99	75.136	Nomascus_leucogenys
ENSOMEG00000019313	sbno1	63	71.250	ENSMEUG00000008768	-	93	73.750	Notamacropus_eugenii
ENSOMEG00000019313	sbno1	99	75.035	ENSOPRG00000011054	SBNO1	99	74.824	Ochotona_princeps
ENSOMEG00000019313	sbno1	99	75.952	ENSODEG00000009997	SBNO1	99	83.485	Octodon_degus
ENSOMEG00000019313	sbno1	99	88.675	ENSONIG00000015348	sbno1	99	88.968	Oreochromis_niloticus
ENSOMEG00000019313	sbno1	98	74.947	ENSOCUG00000002441	SBNO1	95	74.518	Oryctolagus_cuniculus
ENSOMEG00000019313	sbno1	100	96.291	ENSORLG00000001593	sbno1	100	96.291	Oryzias_latipes
ENSOMEG00000019313	sbno1	100	96.574	ENSORLG00020015216	sbno1	100	96.574	Oryzias_latipes_hni
ENSOMEG00000019313	sbno1	100	96.574	ENSORLG00015002726	sbno1	100	96.574	Oryzias_latipes_hsok
ENSOMEG00000019313	sbno1	50	73.267	ENSOGAG00000010781	-	99	73.550	Otolemur_garnettii
ENSOMEG00000019313	sbno1	99	74.842	ENSOARG00000004404	SBNO1	99	75.228	Ovis_aries
ENSOMEG00000019313	sbno1	99	75.374	ENSPPAG00000024635	SBNO1	99	83.273	Pan_paniscus
ENSOMEG00000019313	sbno1	99	75.474	ENSPPRG00000022092	SBNO1	99	75.193	Panthera_pardus
ENSOMEG00000019313	sbno1	99	75.581	ENSPTIG00000017803	SBNO1	99	75.299	Panthera_tigris_altaica
ENSOMEG00000019313	sbno1	99	75.320	ENSPTRG00000005597	SBNO1	99	83.122	Pan_troglodytes
ENSOMEG00000019313	sbno1	99	75.462	ENSPANG00000011640	SBNO1	99	83.122	Papio_anubis
ENSOMEG00000019313	sbno1	99	80.255	ENSPKIG00000001441	sbno1	99	80.538	Paramormyrops_kingsleyae
ENSOMEG00000019313	sbno1	92	72.214	ENSPSIG00000009256	-	99	71.908	Pelodiscus_sinensis
ENSOMEG00000019313	sbno1	98	75.217	ENSPSIG00000009572	-	99	74.911	Pelodiscus_sinensis
ENSOMEG00000019313	sbno1	98	82.577	ENSPEMG00000016087	Sbno1	99	82.577	Peromyscus_maniculatus_bairdii
ENSOMEG00000019313	sbno1	99	75.018	ENSPCIG00000010985	SBNO1	99	75.285	Phascolarctos_cinereus
ENSOMEG00000019313	sbno1	100	89.466	ENSPFOG00000005069	sbno1	100	89.395	Poecilia_formosa
ENSOMEG00000019313	sbno1	100	89.466	ENSPLAG00000015015	sbno1	100	89.395	Poecilia_latipinna
ENSOMEG00000019313	sbno1	100	89.331	ENSPMEG00000021212	sbno1	100	89.260	Poecilia_mexicana
ENSOMEG00000019313	sbno1	100	88.762	ENSPREG00000017746	sbno1	99	90.855	Poecilia_reticulata
ENSOMEG00000019313	sbno1	99	75.353	ENSPPYG00000005084	SBNO1	99	75.565	Pongo_abelii
ENSOMEG00000019313	sbno1	84	75.799	ENSPCAG00000008634	SBNO1	88	68.260	Procavia_capensis
ENSOMEG00000019313	sbno1	95	82.815	ENSPCOG00000024277	SBNO1	99	82.815	Propithecus_coquereli
ENSOMEG00000019313	sbno1	87	83.633	ENSPVAG00000015304	SBNO1	87	83.633	Pteropus_vampyrus
ENSOMEG00000019313	sbno1	99	88.746	ENSPNYG00000004291	sbno1	99	88.754	Pundamilia_nyererei
ENSOMEG00000019313	sbno1	99	81.366	ENSPNAG00000015622	sbno1	100	81.135	Pygocentrus_nattereri
ENSOMEG00000019313	sbno1	99	74.667	ENSRNOG00000001064	Sbno1	99	82.759	Rattus_norvegicus
ENSOMEG00000019313	sbno1	99	75.462	ENSRROG00000034230	SBNO1	99	83.122	Rhinopithecus_roxellana
ENSOMEG00000019313	sbno1	96	74.370	ENSSBOG00000015422	SBNO1	98	74.444	Saimiri_boliviensis_boliviensis
ENSOMEG00000019313	sbno1	99	81.246	ENSSFOG00015019025	sbno1	99	81.104	Scleropages_formosus
ENSOMEG00000019313	sbno1	99	89.650	ENSSMAG00000013640	sbno1	99	89.579	Scophthalmus_maximus
ENSOMEG00000019313	sbno1	99	90.598	ENSSDUG00000023480	sbno1	99	90.598	Seriola_dumerili
ENSOMEG00000019313	sbno1	99	90.385	ENSSLDG00000007928	sbno1	99	90.385	Seriola_lalandi_dorsalis
ENSOMEG00000019313	sbno1	89	80.291	ENSSARG00000002594	SBNO1	88	81.407	Sorex_araneus
ENSOMEG00000019313	sbno1	98	75.127	ENSSPUG00000012640	SBNO1	99	75.125	Sphenodon_punctatus
ENSOMEG00000019313	sbno1	99	90.741	ENSSPAG00000016244	sbno1	99	90.812	Stegastes_partitus
ENSOMEG00000019313	sbno1	99	75.409	ENSSSCG00000009776	SBNO1	99	75.676	Sus_scrofa
ENSOMEG00000019313	sbno1	98	75.018	ENSTGUG00000005380	SBNO1	99	75.618	Taeniopygia_guttata
ENSOMEG00000019313	sbno1	99	86.244	ENSTRUG00000018490	sbno1	99	86.101	Takifugu_rubripes
ENSOMEG00000019313	sbno1	57	82.793	ENSTNIG00000013506	sbno1	99	82.161	Tetraodon_nigroviridis
ENSOMEG00000019313	sbno1	99	75.545	ENSUAMG00000019671	SBNO1	99	75.264	Ursus_americanus
ENSOMEG00000019313	sbno1	99	75.545	ENSUMAG00000004002	SBNO1	99	75.264	Ursus_maritimus
ENSOMEG00000019313	sbno1	95	76.744	ENSVPAG00000007024	SBNO1	95	76.744	Vicugna_pacos
ENSOMEG00000019313	sbno1	99	75.421	ENSVVUG00000027807	SBNO1	99	75.071	Vulpes_vulpes
ENSOMEG00000019313	sbno1	99	73.282	ENSXETG00000031930	SBNO1	87	80.741	Xenopus_tropicalis
ENSOMEG00000019313	sbno1	88	86.699	ENSXCOG00000011607	sbno1	99	83.628	Xiphophorus_couchianus
ENSOMEG00000019313	sbno1	100	89.118	ENSXMAG00000002140	sbno1	100	89.118	Xiphophorus_maculatus