EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSOMEG00000020219 (Gene tree)
Gene ID
112151994
Gene Symbol
pabpc1a
Alias
-
Full Name
poly(A) binding protein cytoplasmic 1
Gene Type
protein_coding
Species
Oryzias_melastigma
Status
putative
Strand
Minus strand
Length
7791 bases
Position
chrNVQA01000016.1:18120725-18128515
Accession
112151994
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSOMEP00000033916PABPPF00658.187.4e-3211
ENSOMEP00000033916RRM_5PF13893.65.4e-0811
ENSOMEP00000033916RRM_1PF00076.224.2e-9314
ENSOMEP00000033916RRM_1PF00076.224.2e-9324
ENSOMEP00000033916RRM_1PF00076.224.2e-9334
ENSOMEP00000033916RRM_1PF00076.224.2e-9344
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSOMET00000035270-2848-ENSOMEP00000033916635 (aa)XP_024136960UPI000CF7F49E
Gene Model
Click here to download ENSOMEG00000020219's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSOMEG00000020219's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSOMEG00000020219pabpc1a5933.684ENSOMEG00000016468rbms2b5333.684
ENSOMEG00000020219pabpc1a9875.478ENSOMEG00000014410pabpc49875.796
ENSOMEG00000020219pabpc1a9865.916ENSOMEG00000010789pabpc1l9965.861
ENSOMEG00000020219pabpc1a5936.145ENSOMEG00000009988elavl48136.145
ENSOMEG00000020219pabpc1a5933.684ENSOMEG00000021369rbms2a5133.684
ENSOMEG00000020219pabpc1a5837.349ENSOMEG00000005178ELAVL28537.349
ENSOMEG00000020219pabpc1a5731.319ENSOMEG00000020931tia17030.769
ENSOMEG00000020219pabpc1a5636.000ENSOMEG00000003334rbm195836.000
ENSOMEG00000020219pabpc1a5937.349ENSOMEG00000023959elavl37737.349
ENSOMEG00000020219pabpc1a5932.632ENSOMEG00000007677-5432.632
ENSOMEG00000020219pabpc1a5439.759ENSOMEG00000019511celf5a6339.759
ENSOMEG00000020219pabpc1a8886.139ENSOMEG00000013627pabpc1b10086.139
ENSOMEG00000020219pabpc1a5034.266ENSOMEG00000016815TIAL15834.028
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSOMEG00000020219pabpc1a5880.102ENSG00000184388PABPC1L2B9880.102Homo_sapiens
ENSOMEG00000020219pabpc1a5880.102ENSG00000186288PABPC1L2A9880.102Homo_sapiens
ENSOMEG00000020219pabpc1a10097.953ENSAPOG00000015105pabpc1a10097.953Acanthochromis_polyacanthus
ENSOMEG00000020219pabpc1a10090.125ENSAPOG00000017776pabpc1b10089.812Acanthochromis_polyacanthus
ENSOMEG00000020219pabpc1a5880.102ENSAMEG00000019441-9880.102Ailuropoda_melanoleuca
ENSOMEG00000020219pabpc1a10085.133ENSACIG00000018366pabpc1b10085.023Amphilophus_citrinellus
ENSOMEG00000020219pabpc1a10097.638ENSACIG00000004685pabpc1a10097.638Amphilophus_citrinellus
ENSOMEG00000020219pabpc1a10098.110ENSAOCG00000011656pabpc1a10098.110Amphiprion_ocellaris
ENSOMEG00000020219pabpc1a10089.655ENSAOCG00000019839pabpc1b10089.498Amphiprion_ocellaris
ENSOMEG00000020219pabpc1a10098.110ENSAPEG00000006963pabpc1a10098.110Amphiprion_percula
ENSOMEG00000020219pabpc1a10089.655ENSAPEG00000010435pabpc1b10089.498Amphiprion_percula
ENSOMEG00000020219pabpc1a10089.202ENSATEG00000012917pabpc1b10089.202Anabas_testudineus
ENSOMEG00000020219pabpc1a10097.953ENSATEG00000024852pabpc1a10097.953Anabas_testudineus
ENSOMEG00000020219pabpc1a5880.102ENSANAG00000019431-9880.102Aotus_nancymaae
ENSOMEG00000020219pabpc1a5880.102ENSANAG00000019429-9880.102Aotus_nancymaae
ENSOMEG00000020219pabpc1a10088.401ENSACLG00000014335pabpc1b10088.245Astatotilapia_calliptera
ENSOMEG00000020219pabpc1a10097.165ENSACLG00000009399pabpc1a10099.010Astatotilapia_calliptera
ENSOMEG00000020219pabpc1a10089.812ENSAMXG00000008599pabpc1b10089.655Astyanax_mexicanus
ENSOMEG00000020219pabpc1a5979.024ENSBTAG00000050902-9879.024Bos_taurus
ENSOMEG00000020219pabpc1a5977.033ENSBTAG00000052491-9877.033Bos_taurus
ENSOMEG00000020219pabpc1a5880.102ENSCJAG00000041326-9880.102Callithrix_jacchus
ENSOMEG00000020219pabpc1a5979.024ENSCAFG00020002052-9879.024Canis_lupus_dingo
ENSOMEG00000020219pabpc1a5880.102ENSCHIG00000011138-9880.102Capra_hircus
ENSOMEG00000020219pabpc1a5880.102ENSCHIG00000006283-9880.102Capra_hircus
ENSOMEG00000020219pabpc1a5880.102ENSTSYG00000001775-9880.102Carlito_syrichta
ENSOMEG00000020219pabpc1a5880.102ENSCPOG00000009525-9880.102Cavia_porcellus
ENSOMEG00000020219pabpc1a5880.102ENSCCAG00000031524-9880.102Cebus_capucinus
ENSOMEG00000020219pabpc1a5880.102ENSCATG00000042826-9880.102Cercocebus_atys
ENSOMEG00000020219pabpc1a5880.102ENSCATG00000043125-9880.102Cercocebus_atys
ENSOMEG00000020219pabpc1a5878.061ENSCLAG00000017412-9878.061Chinchilla_lanigera
ENSOMEG00000020219pabpc1a5878.061ENSCLAG00000017409-9878.061Chinchilla_lanigera
ENSOMEG00000020219pabpc1a5880.102ENSCSAG00000000102-9880.102Chlorocebus_sabaeus
ENSOMEG00000020219pabpc1a5780.110ENSCGRG00001023387-9677.436Cricetulus_griseus_chok1gshd
ENSOMEG00000020219pabpc1a9996.994ENSCSEG00000013324pabpc1a10096.994Cynoglossus_semilaevis
ENSOMEG00000020219pabpc1a10088.401ENSCSEG00000015241-10088.401Cynoglossus_semilaevis
ENSOMEG00000020219pabpc1a10097.480ENSCVAG00000021872pabpc1a10097.480Cyprinodon_variegatus
ENSOMEG00000020219pabpc1a10087.793ENSCVAG00000005489pabpc1b10087.637Cyprinodon_variegatus
ENSOMEG00000020219pabpc1a10091.850ENSDARG00000017219pabpc1a10091.850Danio_rerio
ENSOMEG00000020219pabpc1a10088.871ENSDARG00000021140pabpc1b9992.199Danio_rerio
ENSOMEG00000020219pabpc1a5880.423ENSDNOG00000030926-9878.571Dasypus_novemcinctus
ENSOMEG00000020219pabpc1a5877.551ENSDORG00000011362-9877.551Dipodomys_ordii
ENSOMEG00000020219pabpc1a5978.641ENSEASG00005010399-9878.641Equus_asinus_asinus
ENSOMEG00000020219pabpc1a5978.641ENSECAG00000002620-9878.641Equus_caballus
ENSOMEG00000020219pabpc1a5976.020ENSEEUG00000008203-9876.020Erinaceus_europaeus
ENSOMEG00000020219pabpc1a5958.621ENSELUG00000005389-9758.621Esox_lucius
ENSOMEG00000020219pabpc1a9993.868ENSELUG00000003614pabpc1a10093.868Esox_lucius
ENSOMEG00000020219pabpc1a10088.125ENSELUG00000015062-10087.812Esox_lucius
ENSOMEG00000020219pabpc1a5880.102ENSFCAG00000039701-9880.102Felis_catus
ENSOMEG00000020219pabpc1a5880.102ENSFDAG00000005484-9880.102Fukomys_damarensis
ENSOMEG00000020219pabpc1a10097.638ENSFHEG00000018979pabpc1a10097.638Fundulus_heteroclitus
ENSOMEG00000020219pabpc1a10089.028ENSFHEG00000008186pabpc1b10089.185Fundulus_heteroclitus
ENSOMEG00000020219pabpc1a9993.972ENSGMOG00000013448pabpc1a9993.663Gadus_morhua
ENSOMEG00000020219pabpc1a10080.775ENSGMOG00000002448-10079.448Gadus_morhua
ENSOMEG00000020219pabpc1a10089.969ENSGAFG00000010193pabpc1b10089.969Gambusia_affinis
ENSOMEG00000020219pabpc1a10097.323ENSGAFG00000019750pabpc1a10097.323Gambusia_affinis
ENSOMEG00000020219pabpc1a10097.165ENSGACG00000003572pabpc1a10097.165Gasterosteus_aculeatus
ENSOMEG00000020219pabpc1a10088.062ENSGACG00000003771pabpc1b10088.062Gasterosteus_aculeatus
ENSOMEG00000020219pabpc1a5880.102ENSGGOG00000043933-9880.102Gorilla_gorilla
ENSOMEG00000020219pabpc1a5880.102ENSGGOG00000038606-9880.102Gorilla_gorilla
ENSOMEG00000020219pabpc1a10088.401ENSHBUG00000002075pabpc1b10088.245Haplochromis_burtoni
ENSOMEG00000020219pabpc1a10097.165ENSHBUG00000020487pabpc1a10099.010Haplochromis_burtoni
ENSOMEG00000020219pabpc1a5879.082ENSHGLG00000019668-9879.082Heterocephalus_glaber_female
ENSOMEG00000020219pabpc1a5879.082ENSHGLG00000019762-9879.082Heterocephalus_glaber_female
ENSOMEG00000020219pabpc1a5879.082ENSHGLG00100020854-9879.082Heterocephalus_glaber_male
ENSOMEG00000020219pabpc1a10097.323ENSHCOG00000013502pabpc1a10097.323Hippocampus_comes
ENSOMEG00000020219pabpc1a9875.166ENSHCOG00000003175pabpc1b9981.053Hippocampus_comes
ENSOMEG00000020219pabpc1a8156.716ENSIPUG00000018724-8556.716Ictalurus_punctatus
ENSOMEG00000020219pabpc1a10084.144ENSIPUG00000010791-10083.987Ictalurus_punctatus
ENSOMEG00000020219pabpc1a7555.509ENSIPUG00000021244-6355.556Ictalurus_punctatus
ENSOMEG00000020219pabpc1a10090.709ENSIPUG00000008848pabpc1a10090.551Ictalurus_punctatus
ENSOMEG00000020219pabpc1a5879.592ENSSTOG00000026028-9879.592Ictidomys_tridecemlineatus
ENSOMEG00000020219pabpc1a5879.592ENSSTOG00000022096-9879.592Ictidomys_tridecemlineatus
ENSOMEG00000020219pabpc1a5878.571ENSJJAG00000007037-9878.571Jaculus_jaculus
ENSOMEG00000020219pabpc1a10088.050ENSKMAG00000008049pabpc1b10088.208Kryptolebias_marmoratus
ENSOMEG00000020219pabpc1a10098.110ENSKMAG00000000605pabpc1a10098.110Kryptolebias_marmoratus
ENSOMEG00000020219pabpc1a10097.165ENSLBEG00000024002-10097.165Labrus_bergylta
ENSOMEG00000020219pabpc1a10088.871ENSLBEG00000026845pabpc1b10088.383Labrus_bergylta
ENSOMEG00000020219pabpc1a5878.974ENSLAFG00000023096-9878.974Loxodonta_africana
ENSOMEG00000020219pabpc1a5879.695ENSMFAG00000028878-9879.695Macaca_fascicularis
ENSOMEG00000020219pabpc1a5880.102ENSMMUG00000009740-9880.102Macaca_mulatta
ENSOMEG00000020219pabpc1a5880.102ENSMMUG00000037681-9880.102Macaca_mulatta
ENSOMEG00000020219pabpc1a5880.102ENSMMUG00000039929-9880.102Macaca_mulatta
ENSOMEG00000020219pabpc1a5880.102ENSMNEG00000037732-9880.102Macaca_nemestrina
ENSOMEG00000020219pabpc1a5880.102ENSMLEG00000027495-9880.102Mandrillus_leucophaeus
ENSOMEG00000020219pabpc1a10088.871ENSMAMG00000014610pabpc1b10088.871Mastacembelus_armatus
ENSOMEG00000020219pabpc1a10097.795ENSMAMG00000004502-10097.795Mastacembelus_armatus
ENSOMEG00000020219pabpc1a10088.401ENSMZEG00005026745pabpc1b10088.245Maylandia_zebra
ENSOMEG00000020219pabpc1a10097.165ENSMZEG00005025416pabpc1a10099.010Maylandia_zebra
ENSOMEG00000020219pabpc1a5880.102ENSMICG00000047642-9880.102Microcebus_murinus
ENSOMEG00000020219pabpc1a10083.830ENSMMOG00000018009pabpc1b10083.673Mola_mola
ENSOMEG00000020219pabpc1a10095.469ENSMMOG00000018044pabpc1a10099.010Mola_mola
ENSOMEG00000020219pabpc1a9872.843ENSMODG00000013156-9872.843Monodelphis_domestica
ENSOMEG00000020219pabpc1a9966.197ENSMODG00000015024-9965.674Monodelphis_domestica
ENSOMEG00000020219pabpc1a10083.673ENSMALG00000006066pabpc1b10085.243Monopterus_albus
ENSOMEG00000020219pabpc1a10097.795ENSMALG00000013020-10097.795Monopterus_albus
ENSOMEG00000020219pabpc1a5881.967ENSNGAG00000012688-9878.571Nannospalax_galili
ENSOMEG00000020219pabpc1a10088.401ENSNBRG00000013737pabpc1b10088.245Neolamprologus_brichardi
ENSOMEG00000020219pabpc1a10097.008ENSNBRG00000003068-10099.010Neolamprologus_brichardi
ENSOMEG00000020219pabpc1a5880.102ENSNLEG00000018128-9880.102Nomascus_leucogenys
ENSOMEG00000020219pabpc1a5879.592ENSODEG00000018540-9879.592Octodon_degus
ENSOMEG00000020219pabpc1a10088.401ENSONIG00000002717pabpc1b10088.245Oreochromis_niloticus
ENSOMEG00000020219pabpc1a10096.378ENSONIG00000006871-10096.378Oreochromis_niloticus
ENSOMEG00000020219pabpc1a5880.102ENSOCUG00000002565-9880.102Oryctolagus_cuniculus
ENSOMEG00000020219pabpc1a10099.055ENSORLG00000002691pabpc1a10099.762Oryzias_latipes
ENSOMEG00000020219pabpc1a10084.301ENSORLG00000003008-10083.830Oryzias_latipes
ENSOMEG00000020219pabpc1a10099.213ENSORLG00020022398pabpc1a10099.213Oryzias_latipes_hni
ENSOMEG00000020219pabpc1a10084.301ENSORLG00020022259-10083.830Oryzias_latipes_hni
ENSOMEG00000020219pabpc1a10084.615ENSORLG00015010932-10084.144Oryzias_latipes_hsok
ENSOMEG00000020219pabpc1a10099.055ENSORLG00015013633pabpc110099.055Oryzias_latipes_hsok
ENSOMEG00000020219pabpc1a5880.102ENSOGAG00000029513-9880.102Otolemur_garnettii
ENSOMEG00000020219pabpc1a5880.102ENSOGAG00000026047-9880.102Otolemur_garnettii
ENSOMEG00000020219pabpc1a5880.102ENSOARG00000005943-9880.102Ovis_aries
ENSOMEG00000020219pabpc1a5880.102ENSPPAG00000012920-9880.102Pan_paniscus
ENSOMEG00000020219pabpc1a5880.102ENSPPRG00000011809-9880.102Panthera_pardus
ENSOMEG00000020219pabpc1a5880.102ENSPPRG00000011804-9880.102Panthera_pardus
ENSOMEG00000020219pabpc1a5880.102ENSPTRG00000028252-9880.102Pan_troglodytes
ENSOMEG00000020219pabpc1a5880.102ENSPANG00000011549-9880.102Papio_anubis
ENSOMEG00000020219pabpc1a10089.342ENSPKIG00000005676pabpc1b10089.185Paramormyrops_kingsleyae
ENSOMEG00000020219pabpc1a7092.152ENSPMGG00000023134-9792.152Periophthalmus_magnuspinnatus
ENSOMEG00000020219pabpc1a7097.753ENSPMGG00000022487pabpc1a9297.753Periophthalmus_magnuspinnatus
ENSOMEG00000020219pabpc1a9971.632ENSPCIG00000016995-5571.611Phascolarctos_cinereus
ENSOMEG00000020219pabpc1a10089.812ENSPFOG00000005917pabpc1b10089.969Poecilia_formosa
ENSOMEG00000020219pabpc1a10095.981ENSPFOG00000010815pabpc1a10095.981Poecilia_formosa
ENSOMEG00000020219pabpc1a10089.969ENSPLAG00000001388pabpc1b10090.125Poecilia_latipinna
ENSOMEG00000020219pabpc1a10097.953ENSPLAG00000004114pabpc1a10097.953Poecilia_latipinna
ENSOMEG00000020219pabpc1a10097.953ENSPMEG00000001334pabpc1a10097.953Poecilia_mexicana
ENSOMEG00000020219pabpc1a10089.812ENSPMEG00000014399pabpc1b10089.969Poecilia_mexicana
ENSOMEG00000020219pabpc1a10094.696ENSPREG00000019595pabpc1a100100.000Poecilia_reticulata
ENSOMEG00000020219pabpc1a10089.969ENSPREG00000010911pabpc1b10090.125Poecilia_reticulata
ENSOMEG00000020219pabpc1a5880.102ENSPPYG00000020468-9880.102Pongo_abelii
ENSOMEG00000020219pabpc1a5980.102ENSPCAG00000005308-9880.102Procavia_capensis
ENSOMEG00000020219pabpc1a5879.592ENSPCOG00000026349-9879.592Propithecus_coquereli
ENSOMEG00000020219pabpc1a5980.513ENSPVAG00000016117-9880.513Pteropus_vampyrus
ENSOMEG00000020219pabpc1a10097.165ENSPNYG00000005192pabpc1a10097.165Pundamilia_nyererei
ENSOMEG00000020219pabpc1a10088.401ENSPNYG00000012578pabpc1b10088.245Pundamilia_nyererei
ENSOMEG00000020219pabpc1a10091.366ENSPNAG00000028408pabpc1a10091.052Pygocentrus_nattereri
ENSOMEG00000020219pabpc1a10089.498ENSPNAG00000024626pabpc1b10089.342Pygocentrus_nattereri
ENSOMEG00000020219pabpc1a5880.102ENSRBIG00000027173-9880.102Rhinopithecus_bieti
ENSOMEG00000020219pabpc1a8789.437ENSRBIG00000028738-9589.437Rhinopithecus_bieti
ENSOMEG00000020219pabpc1a5880.102ENSRROG00000017404-9880.102Rhinopithecus_roxellana
ENSOMEG00000020219pabpc1a9864.423ENSSHAG00000000511-10063.942Sarcophilus_harrisii
ENSOMEG00000020219pabpc1a6978.613ENSSFOG00015019668-8878.613Scleropages_formosus
ENSOMEG00000020219pabpc1a10089.796ENSSFOG00015002752-10089.482Scleropages_formosus
ENSOMEG00000020219pabpc1a10090.110ENSSFOG00015006662pabpc1a10090.110Scleropages_formosus
ENSOMEG00000020219pabpc1a10088.401ENSSMAG00000006869pabpc1b10088.245Scophthalmus_maximus
ENSOMEG00000020219pabpc1a10097.323ENSSMAG00000010803pabpc1a10097.323Scophthalmus_maximus
ENSOMEG00000020219pabpc1a10087.774ENSSDUG00000011965pabpc1b10087.441Seriola_dumerili
ENSOMEG00000020219pabpc1a10097.795ENSSDUG00000006675pabpc1a10097.795Seriola_dumerili
ENSOMEG00000020219pabpc1a10097.795ENSSLDG00000011661pabpc1a10097.795Seriola_lalandi_dorsalis
ENSOMEG00000020219pabpc1a10089.425ENSSLDG00000014156pabpc1b10089.097Seriola_lalandi_dorsalis
ENSOMEG00000020219pabpc1a10098.268ENSSPAG00000014453-10098.268Stegastes_partitus
ENSOMEG00000020219pabpc1a10089.969ENSSPAG00000019265pabpc1b10089.639Stegastes_partitus
ENSOMEG00000020219pabpc1a5880.102ENSSSCG00000032167-9880.102Sus_scrofa
ENSOMEG00000020219pabpc1a5880.102ENSSSCG00000036336-9880.102Sus_scrofa
ENSOMEG00000020219pabpc1a10085.759ENSTRUG00000003767-10085.759Takifugu_rubripes
ENSOMEG00000020219pabpc1a10094.654ENSTRUG00000011577-10094.969Takifugu_rubripes
ENSOMEG00000020219pabpc1a10086.293ENSTNIG00000009153pabpc1b10085.670Tetraodon_nigroviridis
ENSOMEG00000020219pabpc1a10091.628ENSTNIG00000013307pabpc1a10091.938Tetraodon_nigroviridis
ENSOMEG00000020219pabpc1a5880.102ENSTTRG00000013181-9880.102Tursiops_truncatus
ENSOMEG00000020219pabpc1a5880.102ENSUAMG00000008089-9880.102Ursus_americanus
ENSOMEG00000020219pabpc1a9753.784ENSUMAG00000023926-8969.890Ursus_maritimus
ENSOMEG00000020219pabpc1a5880.102ENSUMAG00000003364-9880.102Ursus_maritimus
ENSOMEG00000020219pabpc1a5879.000ENSVVUG00000015892-9779.000Vulpes_vulpes
ENSOMEG00000020219pabpc1a9745.455ENSXETG00000015439-9744.931Xenopus_tropicalis
ENSOMEG00000020219pabpc1a10085.871ENSXCOG00000019901pabpc1b10085.714Xiphophorus_couchianus
ENSOMEG00000020219pabpc1a10091.496ENSXCOG00000017066pabpc1a10091.496Xiphophorus_couchianus
ENSOMEG00000020219pabpc1a10097.795ENSXMAG00000002555pabpc1a10097.795Xiphophorus_maculatus
ENSOMEG00000020219pabpc1a10090.125ENSXMAG00000003753pabpc1b10090.125Xiphophorus_maculatus

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