EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSOMEG00000020418 (Gene tree)
Gene ID: 112159642
Gene Symbol: rab42a
Alias: -
Full Name: ras-related protein Rab-39B-like
Gene Type: protein_coding
Species: Oryzias_melastigma
Status: putative
Strand: Minus strand
Length: 4553 bases
Position: chrNVQA01000004.1:13352696-13357248
Accession: 112159642
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOMEP00000034051	MMR_HSR1	PF01926.23	7.7e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOMET00000027719	-	817	-	ENSOMEP00000034051	218 (aa)	XP_024149629	UPI0002A4828C

Gene Model

Click here to download ENSOMEG00000020418's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOMEG00000020418's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSOMEG00000020418	rab42a	79	34.483	ENSOMEG00000010334	rab34b	71	34.483
ENSOMEG00000020418	rab42a	72	40.881	ENSOMEG00000023716	opn1sw2	77	40.625
ENSOMEG00000020418	rab42a	100	54.587	ENSOMEG00000006333	RAB39B	100	54.587
ENSOMEG00000020418	rab42a	75	38.323	ENSOMEG00000008327	rab9b	76	38.323
ENSOMEG00000020418	rab42a	83	41.111	ENSOMEG00000001613	rab30	88	41.111
ENSOMEG00000020418	rab42a	74	42.331	ENSOMEG00000018494	-	66	42.331
ENSOMEG00000020418	rab42a	74	34.940	ENSOMEG00000017263	-	79	34.940
ENSOMEG00000020418	rab42a	98	38.785	ENSOMEG00000003623	rab14	97	38.785
ENSOMEG00000020418	rab42a	69	42.949	ENSOMEG00000021726	-	64	42.949
ENSOMEG00000020418	rab42a	84	31.313	ENSOMEG00000019923	rasl11a	76	31.313
ENSOMEG00000020418	rab42a	96	38.318	ENSOMEG00000022002	rab15	96	38.318
ENSOMEG00000020418	rab42a	98	39.535	ENSOMEG00000020271	rab11al	95	39.535
ENSOMEG00000020418	rab42a	72	39.490	ENSOMEG00000004379	-	75	39.490
ENSOMEG00000020418	rab42a	78	34.682	ENSOMEG00000000336	RAB29	85	34.682
ENSOMEG00000020418	rab42a	77	32.934	ENSOMEG00000009463	rhebl1	88	32.934
ENSOMEG00000020418	rab42a	82	42.697	ENSOMEG00000006036	rab1ab	87	42.697
ENSOMEG00000020418	rab42a	67	36.054	ENSOMEG00000001706	rab23	73	35.526
ENSOMEG00000020418	rab42a	82	42.697	ENSOMEG00000009074	-	87	42.697
ENSOMEG00000020418	rab42a	75	40.120	ENSOMEG00000009701	RAB9A	83	40.120
ENSOMEG00000020418	rab42a	75	44.242	ENSOMEG00000010510	rab25a	78	44.242
ENSOMEG00000020418	rab42a	72	39.490	ENSOMEG00000017258	RAB41	73	39.490
ENSOMEG00000020418	rab42a	85	42.473	ENSOMEG00000002581	rab11ba	84	42.473
ENSOMEG00000020418	rab42a	69	34.437	ENSOMEG00000018719	hrasb	85	33.537
ENSOMEG00000020418	rab42a	100	55.046	ENSOMEG00000017881	-	100	55.046
ENSOMEG00000020418	rab42a	76	41.212	ENSOMEG00000007546	rab18b	80	41.212
ENSOMEG00000020418	rab42a	69	35.099	ENSOMEG00000016685	zgc:55558	87	34.146
ENSOMEG00000020418	rab42a	75	38.323	ENSOMEG00000000162	rab9a	82	38.323
ENSOMEG00000020418	rab42a	79	42.775	ENSOMEG00000008210	rab13	86	42.775
ENSOMEG00000020418	rab42a	82	41.341	ENSOMEG00000020350	rab25b	84	42.353
ENSOMEG00000020418	rab42a	85	41.935	ENSOMEG00000017806	-	84	41.935
ENSOMEG00000020418	rab42a	75	37.195	ENSOMEG00000023078	rab5c	74	37.195
ENSOMEG00000020418	rab42a	67	41.216	ENSOMEG00000017306	rab33a	54	41.216
ENSOMEG00000020418	rab42a	74	31.288	ENSOMEG00000008576	rabl2	72	31.288
ENSOMEG00000020418	rab42a	79	43.931	ENSOMEG00000020594	zgc:171927	80	43.931
ENSOMEG00000020418	rab42a	97	32.701	ENSOMEG00000014206	rab6ba	94	32.701
ENSOMEG00000020418	rab42a	80	41.143	ENSOMEG00000015474	si:dkey-16l2.16	83	41.143
ENSOMEG00000020418	rab42a	70	35.065	ENSOMEG00000011584	pth2r	69	34.940
ENSOMEG00000020418	rab42a	72	34.395	ENSOMEG00000000343	rras	86	33.529
ENSOMEG00000020418	rab42a	78	41.279	ENSOMEG00000008191	rab12	70	41.279
ENSOMEG00000020418	rab42a	74	33.742	ENSOMEG00000011273	kras	98	30.890
ENSOMEG00000020418	rab42a	98	38.785	ENSOMEG00000009290	-	97	38.785
ENSOMEG00000020418	rab42a	67	45.946	ENSOMEG00000019819	rab33ba	62	45.946
ENSOMEG00000020418	rab42a	85	41.935	ENSOMEG00000002562	-	84	41.935
ENSOMEG00000020418	rab42a	77	38.095	ENSOMEG00000019462	RAB15	80	38.095
ENSOMEG00000020418	rab42a	87	62.500	ENSOMEG00000017958	si:dkey-34d22.5	97	57.674
ENSOMEG00000020418	rab42a	55	31.933	ENSOMEG00000011161	RAP2B	87	31.818
ENSOMEG00000020418	rab42a	91	40.201	ENSOMEG00000017467	rab11a	92	40.201
ENSOMEG00000020418	rab42a	74	34.940	ENSOMEG00000010156	-	79	34.940
ENSOMEG00000020418	rab42a	94	32.227	ENSOMEG00000003647	rab34a	68	32.227
ENSOMEG00000020418	rab42a	86	47.872	ENSOMEG00000016752	rab2a	88	47.872
ENSOMEG00000020418	rab42a	75	35.366	ENSOMEG00000010692	rab5aa	75	35.366
ENSOMEG00000020418	rab42a	70	42.208	ENSOMEG00000013128	zgc:101559	66	42.208
ENSOMEG00000020418	rab42a	77	32.738	ENSOMEG00000013685	rheb	89	32.738
ENSOMEG00000020418	rab42a	77	36.527	ENSOMEG00000023625	rab6bb	85	36.527
ENSOMEG00000020418	rab42a	76	38.788	ENSOMEG00000020605	rab18a	80	38.788

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOMEG00000020418	rab42a	100	95.872	ENSAPOG00000009188	rab42a	100	95.872	Acanthochromis_polyacanthus
ENSOMEG00000020418	rab42a	100	96.330	ENSACIG00000003102	rab42a	100	96.330	Amphilophus_citrinellus
ENSOMEG00000020418	rab42a	100	95.413	ENSAOCG00000012921	rab42a	83	95.413	Amphiprion_ocellaris
ENSOMEG00000020418	rab42a	100	95.413	ENSAPEG00000007713	rab42a	83	95.413	Amphiprion_percula
ENSOMEG00000020418	rab42a	100	93.119	ENSATEG00000009052	rab42a	100	93.119	Anabas_testudineus
ENSOMEG00000020418	rab42a	100	95.413	ENSACLG00000007514	rab42a	100	95.413	Astatotilapia_calliptera
ENSOMEG00000020418	rab42a	100	90.826	ENSAMXG00000032729	rab42a	100	90.826	Astyanax_mexicanus
ENSOMEG00000020418	rab42a	100	93.119	ENSCSEG00000010582	rab42a	100	93.119	Cynoglossus_semilaevis
ENSOMEG00000020418	rab42a	100	47.032	ENSDARG00000102580	CU571310.1	99	47.032	Danio_rerio
ENSOMEG00000020418	rab42a	100	91.284	ENSDARG00000034215	rab42a	100	91.284	Danio_rerio
ENSOMEG00000020418	rab42a	100	89.450	ENSELUG00000010345	rab42a	100	89.450	Esox_lucius
ENSOMEG00000020418	rab42a	100	96.330	ENSFHEG00000013106	rab42a	100	96.330	Fundulus_heteroclitus
ENSOMEG00000020418	rab42a	100	95.413	ENSGAFG00000002141	rab42a	100	95.413	Gambusia_affinis
ENSOMEG00000020418	rab42a	100	95.413	ENSHBUG00000015126	rab42a	82	95.413	Haplochromis_burtoni
ENSOMEG00000020418	rab42a	100	88.073	ENSIPUG00000011376	rab42a	100	88.073	Ictalurus_punctatus
ENSOMEG00000020418	rab42a	100	95.413	ENSKMAG00000007267	rab42a	100	95.413	Kryptolebias_marmoratus
ENSOMEG00000020418	rab42a	100	95.872	ENSLBEG00000001193	rab42a	100	95.872	Labrus_bergylta
ENSOMEG00000020418	rab42a	100	64.220	ENSLACG00000012755	-	100	64.220	Latimeria_chalumnae
ENSOMEG00000020418	rab42a	100	50.685	ENSLOCG00000015825	-	99	50.685	Lepisosteus_oculatus
ENSOMEG00000020418	rab42a	100	82.110	ENSLOCG00000003453	rab42a	100	82.110	Lepisosteus_oculatus
ENSOMEG00000020418	rab42a	100	97.248	ENSMAMG00000002296	rab42a	100	97.248	Mastacembelus_armatus
ENSOMEG00000020418	rab42a	100	95.413	ENSMZEG00005012460	rab42a	82	95.413	Maylandia_zebra
ENSOMEG00000020418	rab42a	100	93.578	ENSMMOG00000014358	rab42a	100	93.578	Mola_mola
ENSOMEG00000020418	rab42a	100	95.872	ENSNBRG00000021487	rab42a	82	95.872	Neolamprologus_brichardi
ENSOMEG00000020418	rab42a	100	100.000	ENSORLG00000022335	rab42a	100	100.000	Oryzias_latipes
ENSOMEG00000020418	rab42a	100	100.000	ENSORLG00020013895	rab42a	100	100.000	Oryzias_latipes_hni
ENSOMEG00000020418	rab42a	100	100.000	ENSORLG00015004273	rab42a	100	100.000	Oryzias_latipes_hsok
ENSOMEG00000020418	rab42a	89	50.000	ENSPKIG00000015234	-	93	50.000	Paramormyrops_kingsleyae
ENSOMEG00000020418	rab42a	100	78.082	ENSPKIG00000021215	-	100	78.082	Paramormyrops_kingsleyae
ENSOMEG00000020418	rab42a	90	95.939	ENSPMGG00000024112	rab42a	90	95.939	Periophthalmus_magnuspinnatus
ENSOMEG00000020418	rab42a	100	94.495	ENSPFOG00000004838	rab42a	82	94.495	Poecilia_formosa
ENSOMEG00000020418	rab42a	100	94.954	ENSPLAG00000005628	rab42a	100	94.954	Poecilia_latipinna
ENSOMEG00000020418	rab42a	100	94.495	ENSPMEG00000019497	rab42a	100	94.495	Poecilia_mexicana
ENSOMEG00000020418	rab42a	100	95.413	ENSPREG00000013962	rab42a	100	95.413	Poecilia_reticulata
ENSOMEG00000020418	rab42a	100	95.413	ENSPNYG00000010325	rab42a	82	95.413	Pundamilia_nyererei
ENSOMEG00000020418	rab42a	100	90.826	ENSPNAG00000016567	rab42a	100	90.826	Pygocentrus_nattereri
ENSOMEG00000020418	rab42a	100	84.862	ENSSFOG00015020732	rab42a	100	84.862	Scleropages_formosus
ENSOMEG00000020418	rab42a	100	46.119	ENSSFOG00015016000	-	97	46.119	Scleropages_formosus
ENSOMEG00000020418	rab42a	100	94.495	ENSSMAG00000020311	rab42a	100	94.495	Scophthalmus_maximus
ENSOMEG00000020418	rab42a	100	96.789	ENSSDUG00000011851	rab42a	100	96.789	Seriola_dumerili
ENSOMEG00000020418	rab42a	100	96.789	ENSSLDG00000020354	rab42a	100	96.789	Seriola_lalandi_dorsalis
ENSOMEG00000020418	rab42a	100	97.248	ENSSPAG00000016167	rab42a	100	97.248	Stegastes_partitus
ENSOMEG00000020418	rab42a	100	95.413	ENSTRUG00000010224	rab42a	100	95.413	Takifugu_rubripes
ENSOMEG00000020418	rab42a	100	95.872	ENSXCOG00000003428	rab42a	100	95.872	Xiphophorus_couchianus
ENSOMEG00000020418	rab42a	100	95.872	ENSXMAG00000028376	rab42a	100	95.872	Xiphophorus_maculatus