EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSOMEG00000020488 (Gene tree)
Gene ID: 112156181
Gene Symbol: -
Alias: -
Full Name: heterogeneous nuclear ribonucleoprotein C-like
Gene Type: protein_coding
Species: Oryzias_melastigma
Status: putative
Strand: Minus strand
Length: 7811 bases
Position: chrNVQA01000020.1:5391129-5398939
Accession: 112156181
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOMEP00000034089	RRM_1	PF00076.22	2.4e-12	1	1
ENSOMEP00000034094	RRM_1	PF00076.22	2.4e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOMET00000027797	-	1818	-	ENSOMEP00000034094	308 (aa)	XP_024144149	UPI000CF7E961
ENSOMET00000027780	-	1702	-	ENSOMEP00000034089	308 (aa)	XP_024144149	UPI000CF7E961

Gene Model

Click here to download ENSOMEG00000020488's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOMEG00000020488's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSOMEG00000020488	-	81	73.438	ENSOMEG00000022665	-	79	75.781
ENSOMEG00000020488	-	83	50.000	ENSOMEG00000001170	-	66	79.221
ENSOMEG00000020488	-	68	55.507	ENSOMEG00000011821	-	75	56.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOMEG00000020488	-	72	54.185	ENSG00000184672	RALYL	91	79.221	Homo_sapiens
ENSOMEG00000020488	-	93	80.351	ENSAPOG00000006963	hnrnpc	86	79.775	Acanthochromis_polyacanthus
ENSOMEG00000020488	-	83	83.529	ENSACIG00000000270	-	84	83.665	Amphilophus_citrinellus
ENSOMEG00000020488	-	96	63.545	ENSACIG00000016568	-	90	69.478	Amphilophus_citrinellus
ENSOMEG00000020488	-	81	72.941	ENSAOCG00000021616	-	78	75.686	Amphiprion_ocellaris
ENSOMEG00000020488	-	93	80.000	ENSAOCG00000003896	-	86	79.401	Amphiprion_ocellaris
ENSOMEG00000020488	-	93	80.000	ENSAPEG00000001489	-	86	79.401	Amphiprion_percula
ENSOMEG00000020488	-	83	72.973	ENSAPEG00000019962	-	81	75.294	Amphiprion_percula
ENSOMEG00000020488	-	85	72.388	ENSATEG00000018006	-	78	78.404	Anabas_testudineus
ENSOMEG00000020488	-	100	80.000	ENSATEG00000011734	-	86	80.150	Anabas_testudineus
ENSOMEG00000020488	-	72	49.167	ENSAPLG00000015574	RALYL	79	49.576	Anas_platyrhynchos
ENSOMEG00000020488	-	72	49.167	ENSACAG00000028464	RALYL	78	50.000	Anolis_carolinensis
ENSOMEG00000020488	-	72	54.185	ENSANAG00000023383	RALYL	78	53.812	Aotus_nancymaae
ENSOMEG00000020488	-	100	75.081	ENSACLG00000013636	-	92	75.728	Astatotilapia_calliptera
ENSOMEG00000020488	-	85	70.896	ENSACLG00000005707	-	86	74.510	Astatotilapia_calliptera
ENSOMEG00000020488	-	100	75.405	ENSACLG00000000995	-	100	76.052	Astatotilapia_calliptera
ENSOMEG00000020488	-	68	65.877	ENSAMXG00000042946	hnrnpc	97	68.394	Astyanax_mexicanus
ENSOMEG00000020488	-	85	70.881	ENSAMXG00000034915	zgc:55733	86	71.200	Astyanax_mexicanus
ENSOMEG00000020488	-	72	53.744	ENSCJAG00000000402	RALYL	78	53.363	Callithrix_jacchus
ENSOMEG00000020488	-	72	49.372	ENSCPOG00000012314	RALYL	78	50.638	Cavia_porcellus
ENSOMEG00000020488	-	86	49.632	ENSCCAG00000025003	RALYL	75	79.221	Cebus_capucinus
ENSOMEG00000020488	-	72	54.185	ENSCATG00000042145	RALYL	78	53.363	Cercocebus_atys
ENSOMEG00000020488	-	72	49.372	ENSCLAG00000005228	RALYL	78	50.638	Chinchilla_lanigera
ENSOMEG00000020488	-	68	51.304	ENSCHOG00000013228	RALYL	74	48.069	Choloepus_hoffmanni
ENSOMEG00000020488	-	72	54.185	ENSCANG00000039144	RALYL	78	53.363	Colobus_angolensis_palliatus
ENSOMEG00000020488	-	72	50.417	ENSCGRG00001009241	Ralyl	78	50.847	Cricetulus_griseus_chok1gshd
ENSOMEG00000020488	-	68	74.882	ENSCSEG00000019769	-	70	75.362	Cynoglossus_semilaevis
ENSOMEG00000020488	-	77	69.710	ENSCSEG00000021349	-	78	69.020	Cynoglossus_semilaevis
ENSOMEG00000020488	-	96	70.707	ENSCVAG00000002797	-	85	69.960	Cyprinodon_variegatus
ENSOMEG00000020488	-	81	75.000	ENSCVAG00000016981	-	77	73.828	Cyprinodon_variegatus
ENSOMEG00000020488	-	85	70.881	ENSDARG00000103845	zgc:55733	90	71.200	Danio_rerio
ENSOMEG00000020488	-	78	72.131	ENSDARG00000053810	hnrnpc	78	71.654	Danio_rerio
ENSOMEG00000020488	-	72	50.417	ENSDORG00000003721	Ralyl	78	50.847	Dipodomys_ordii
ENSOMEG00000020488	-	53	53.409	ENSETEG00000014028	RALYL	80	58.491	Echinops_telfairi
ENSOMEG00000020488	-	69	45.575	ENSEBUG00000012363	hnrnpc	65	47.619	Eptatretus_burgeri
ENSOMEG00000020488	-	69	52.511	ENSEBUG00000006049	RALYL	89	46.875	Eptatretus_burgeri
ENSOMEG00000020488	-	72	50.417	ENSEEUG00000007202	RALYL	80	51.915	Erinaceus_europaeus
ENSOMEG00000020488	-	85	71.004	ENSELUG00000004132	-	87	72.587	Esox_lucius
ENSOMEG00000020488	-	81	70.896	ENSELUG00000007714	-	88	71.648	Esox_lucius
ENSOMEG00000020488	-	68	55.300	ENSFALG00000008647	RALYL	96	54.460	Ficedula_albicollis
ENSOMEG00000020488	-	83	70.330	ENSFHEG00000007278	-	93	63.430	Fundulus_heteroclitus
ENSOMEG00000020488	-	93	77.622	ENSFHEG00000003605	-	88	76.493	Fundulus_heteroclitus
ENSOMEG00000020488	-	72	51.965	ENSGALG00000036938	RALYL	78	49.576	Gallus_gallus
ENSOMEG00000020488	-	95	77.816	ENSGAFG00000020486	-	87	77.612	Gambusia_affinis
ENSOMEG00000020488	-	83	71.815	ENSGAFG00000020992	-	82	74.118	Gambusia_affinis
ENSOMEG00000020488	-	70	65.909	ENSGACG00000018932	-	85	66.509	Gasterosteus_aculeatus
ENSOMEG00000020488	-	81	75.686	ENSGACG00000017772	-	96	76.190	Gasterosteus_aculeatus
ENSOMEG00000020488	-	72	54.185	ENSGGOG00000000841	RALYL	78	53.363	Gorilla_gorilla
ENSOMEG00000020488	-	85	70.522	ENSHBUG00000010527	-	79	73.541	Haplochromis_burtoni
ENSOMEG00000020488	-	100	75.728	ENSHBUG00000018342	-	100	76.375	Haplochromis_burtoni
ENSOMEG00000020488	-	72	48.954	ENSHGLG00000004866	RALYL	78	50.213	Heterocephalus_glaber_female
ENSOMEG00000020488	-	72	48.954	ENSHGLG00100017480	RALYL	78	50.213	Heterocephalus_glaber_male
ENSOMEG00000020488	-	93	63.787	ENSHCOG00000012333	hnrnpc	86	69.663	Hippocampus_comes
ENSOMEG00000020488	-	85	72.031	ENSIPUG00000008666	zgc:55733	92	76.636	Ictalurus_punctatus
ENSOMEG00000020488	-	83	69.847	ENSIPUG00000011271	hnrnpc	96	72.197	Ictalurus_punctatus
ENSOMEG00000020488	-	72	50.000	ENSSTOG00000012583	RALYL	80	50.424	Ictidomys_tridecemlineatus
ENSOMEG00000020488	-	92	80.919	ENSKMAG00000011170	-	85	80.524	Kryptolebias_marmoratus
ENSOMEG00000020488	-	81	71.373	ENSKMAG00000018265	-	78	74.510	Kryptolebias_marmoratus
ENSOMEG00000020488	-	88	72.043	ENSLBEG00000024418	-	84	72.157	Labrus_bergylta
ENSOMEG00000020488	-	87	75.655	ENSLBEG00000006979	-	85	75.304	Labrus_bergylta
ENSOMEG00000020488	-	84	71.591	ENSLBEG00000006193	-	79	74.118	Labrus_bergylta
ENSOMEG00000020488	-	86	61.993	ENSLOCG00000002560	hnrnpc	88	63.707	Lepisosteus_oculatus
ENSOMEG00000020488	-	72	54.185	ENSMNEG00000033288	RALYL	78	53.363	Macaca_nemestrina
ENSOMEG00000020488	-	72	54.185	ENSMLEG00000038284	RALYL	78	53.363	Mandrillus_leucophaeus
ENSOMEG00000020488	-	93	70.548	ENSMAMG00000008033	-	88	74.708	Mastacembelus_armatus
ENSOMEG00000020488	-	87	82.397	ENSMAMG00000012236	-	86	82.022	Mastacembelus_armatus
ENSOMEG00000020488	-	100	75.405	ENSMZEG00005020460	-	100	76.052	Maylandia_zebra
ENSOMEG00000020488	-	85	70.896	ENSMZEG00005024249	-	80	74.510	Maylandia_zebra
ENSOMEG00000020488	-	72	50.417	ENSMAUG00000015149	Ralyl	78	50.847	Mesocricetus_auratus
ENSOMEG00000020488	-	72	52.632	ENSMICG00000005558	RALYL	78	77.922	Microcebus_murinus
ENSOMEG00000020488	-	72	50.417	ENSMOCG00000017371	Ralyl	78	50.847	Microtus_ochrogaster
ENSOMEG00000020488	-	81	76.096	ENSMMOG00000019520	-	84	75.984	Mola_mola
ENSOMEG00000020488	-	85	76.515	ENSMMOG00000021465	-	88	79.365	Mola_mola
ENSOMEG00000020488	-	85	73.864	ENSMALG00000014623	-	79	73.725	Monopterus_albus
ENSOMEG00000020488	-	96	69.492	ENSMALG00000007520	-	98	70.447	Monopterus_albus
ENSOMEG00000020488	-	72	50.000	ENSMUSG00000039717	Ralyl	91	77.922	Mus_musculus
ENSOMEG00000020488	-	72	50.833	ENSMPUG00000010724	RALYL	78	49.576	Mustela_putorius_furo
ENSOMEG00000020488	-	72	50.417	ENSNGAG00000013375	Ralyl	78	50.847	Nannospalax_galili
ENSOMEG00000020488	-	95	77.592	ENSNBRG00000004912	-	91	74.775	Neolamprologus_brichardi
ENSOMEG00000020488	-	85	70.522	ENSNBRG00000015676	-	79	73.541	Neolamprologus_brichardi
ENSOMEG00000020488	-	72	54.185	ENSNLEG00000002702	RALYL	74	53.363	Nomascus_leucogenys
ENSOMEG00000020488	-	58	47.475	ENSOPRG00000013650	-	98	44.335	Ochotona_princeps
ENSOMEG00000020488	-	72	50.209	ENSODEG00000001012	RALYL	78	51.064	Octodon_degus
ENSOMEG00000020488	-	81	80.159	ENSONIG00000007859	-	90	79.008	Oreochromis_niloticus
ENSOMEG00000020488	-	85	70.522	ENSONIG00000018350	-	79	73.541	Oreochromis_niloticus
ENSOMEG00000020488	-	81	71.483	ENSORLG00000003144	-	78	73.764	Oryzias_latipes
ENSOMEG00000020488	-	100	97.403	ENSORLG00000009999	-	100	97.403	Oryzias_latipes
ENSOMEG00000020488	-	100	97.078	ENSORLG00020018228	hnrnpc	100	97.078	Oryzias_latipes_hni
ENSOMEG00000020488	-	81	71.483	ENSORLG00015009460	-	78	73.764	Oryzias_latipes_hsok
ENSOMEG00000020488	-	100	97.403	ENSORLG00015019755	-	100	97.403	Oryzias_latipes_hsok
ENSOMEG00000020488	-	72	54.185	ENSPPAG00000038705	RALYL	78	53.363	Pan_paniscus
ENSOMEG00000020488	-	72	53.712	ENSPPRG00000018612	RALYL	78	52.444	Panthera_pardus
ENSOMEG00000020488	-	72	53.712	ENSPTIG00000020331	RALYL	78	52.444	Panthera_tigris_altaica
ENSOMEG00000020488	-	72	54.185	ENSPTRG00000020381	RALYL	78	53.363	Pan_troglodytes
ENSOMEG00000020488	-	72	54.185	ENSPANG00000029305	RALYL	78	53.363	Papio_anubis
ENSOMEG00000020488	-	87	68.841	ENSPKIG00000022837	-	81	73.359	Paramormyrops_kingsleyae
ENSOMEG00000020488	-	85	69.742	ENSPKIG00000008592	-	81	71.264	Paramormyrops_kingsleyae
ENSOMEG00000020488	-	72	49.167	ENSPSIG00000011135	RALYL	78	49.576	Pelodiscus_sinensis
ENSOMEG00000020488	-	70	80.093	ENSPMGG00000013144	-	80	78.774	Periophthalmus_magnuspinnatus
ENSOMEG00000020488	-	67	75.243	ENSPMGG00000017774	-	86	66.667	Periophthalmus_magnuspinnatus
ENSOMEG00000020488	-	72	50.417	ENSPEMG00000016447	Ralyl	78	50.847	Peromyscus_maniculatus_bairdii
ENSOMEG00000020488	-	68	53.247	ENSPMAG00000002407	RALYL	96	53.333	Petromyzon_marinus
ENSOMEG00000020488	-	94	63.754	ENSPFOG00000002643	-	80	73.359	Poecilia_formosa
ENSOMEG00000020488	-	100	76.774	ENSPFOG00000001583	-	87	77.323	Poecilia_formosa
ENSOMEG00000020488	-	100	76.375	ENSPLAG00000015305	-	87	76.866	Poecilia_latipinna
ENSOMEG00000020488	-	81	72.157	ENSPLAG00000000061	-	78	74.510	Poecilia_latipinna
ENSOMEG00000020488	-	95	78.157	ENSPMEG00000004802	-	87	77.239	Poecilia_mexicana
ENSOMEG00000020488	-	81	72.157	ENSPMEG00000016524	-	78	74.118	Poecilia_mexicana
ENSOMEG00000020488	-	83	74.615	ENSPREG00000001852	-	86	75.000	Poecilia_reticulata
ENSOMEG00000020488	-	87	80.000	ENSPREG00000007928	-	87	78.731	Poecilia_reticulata
ENSOMEG00000020488	-	72	47.748	ENSPPYG00000018710	-	63	80.220	Pongo_abelii
ENSOMEG00000020488	-	72	49.791	ENSPVAG00000010821	RALYL	78	51.064	Pteropus_vampyrus
ENSOMEG00000020488	-	83	79.377	ENSPNYG00000020293	-	86	80.159	Pundamilia_nyererei
ENSOMEG00000020488	-	97	62.252	ENSPNYG00000003747	-	85	73.541	Pundamilia_nyererei
ENSOMEG00000020488	-	85	70.111	ENSPNAG00000019200	zgc:55733	81	68.462	Pygocentrus_nattereri
ENSOMEG00000020488	-	77	70.886	ENSPNAG00000015686	hnrnpc	84	71.146	Pygocentrus_nattereri
ENSOMEG00000020488	-	72	54.185	ENSRROG00000023925	RALYL	80	77.215	Rhinopithecus_roxellana
ENSOMEG00000020488	-	82	70.455	ENSSFOG00015012924	-	78	89.610	Scleropages_formosus
ENSOMEG00000020488	-	83	67.557	ENSSFOG00015012015	-	82	75.701	Scleropages_formosus
ENSOMEG00000020488	-	95	61.279	ENSSMAG00000011147	-	78	76.168	Scophthalmus_maximus
ENSOMEG00000020488	-	87	77.528	ENSSMAG00000013592	-	84	76.779	Scophthalmus_maximus
ENSOMEG00000020488	-	85	75.094	ENSSDUG00000006730	-	80	74.409	Seriola_dumerili
ENSOMEG00000020488	-	100	79.288	ENSSDUG00000001723	-	86	79.775	Seriola_dumerili
ENSOMEG00000020488	-	85	75.094	ENSSLDG00000007474	-	87	75.686	Seriola_lalandi_dorsalis
ENSOMEG00000020488	-	91	79.643	ENSSLDG00000007454	-	87	79.775	Seriola_lalandi_dorsalis
ENSOMEG00000020488	-	91	81.851	ENSSPAG00000023204	-	86	81.273	Stegastes_partitus
ENSOMEG00000020488	-	85	72.932	ENSSPAG00000013996	-	79	75.686	Stegastes_partitus
ENSOMEG00000020488	-	70	49.362	ENSTGUG00000011689	RALYL	78	49.784	Taeniopygia_guttata
ENSOMEG00000020488	-	83	76.078	ENSTRUG00000020158	-	82	75.299	Takifugu_rubripes
ENSOMEG00000020488	-	93	66.667	ENSTNIG00000000334	-	93	70.079	Tetraodon_nigroviridis
ENSOMEG00000020488	-	83	72.797	ENSTNIG00000007427	-	83	72.374	Tetraodon_nigroviridis
ENSOMEG00000020488	-	70	45.726	ENSTBEG00000005551	RALYL	88	45.415	Tupaia_belangeri
ENSOMEG00000020488	-	72	49.789	ENSTTRG00000015762	RALYL	78	50.638	Tursiops_truncatus
ENSOMEG00000020488	-	72	47.639	ENSVPAG00000008501	RALYL	78	48.230	Vicugna_pacos
ENSOMEG00000020488	-	89	74.545	ENSXCOG00000006552	-	81	75.099	Xiphophorus_couchianus
ENSOMEG00000020488	-	51	80.000	ENSXCOG00000019434	-	91	67.281	Xiphophorus_couchianus
ENSOMEG00000020488	-	100	77.994	ENSXMAG00000009333	-	87	77.612	Xiphophorus_maculatus
ENSOMEG00000020488	-	81	71.373	ENSXMAG00000022849	-	82	73.725	Xiphophorus_maculatus