EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSOMEG00000020627 (Gene tree)
Gene ID: 112137201
Gene Symbol: ptcd1
Alias: -
Full Name: pentatricopeptide repeat-containing protein 1%2C mitochondrial-like
Gene Type: protein_coding
Species: Oryzias_melastigma
Status: putative
Strand: Minus strand
Length: 7666 bases
Position: chrNVQA01000036.1:4388719-4396384
Accession: 112137201
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOMEP00000018881	PPR	PF01535.20	2.9e-17	1	2
ENSOMEP00000018881	PPR	PF01535.20	2.9e-17	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOMET00000027961	-	3929	-	ENSOMEP00000018881	662 (aa)	XP_024115144	UPI000CF830FA

Gene Model

Click here to download ENSOMEG00000020627's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOMEG00000020627's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOMEG00000020627	ptcd1	88	47.619	ENSG00000106246	PTCD1	87	47.471	Homo_sapiens
ENSOMEG00000020627	ptcd1	88	47.783	ENSG00000248919	ATP5MF-PTCD1	81	47.471	Homo_sapiens
ENSOMEG00000020627	ptcd1	92	64.630	ENSAPOG00000010679	ptcd1	96	64.630	Acanthochromis_polyacanthus
ENSOMEG00000020627	ptcd1	87	49.088	ENSAMEG00000006224	-	79	49.088	Ailuropoda_melanoleuca
ENSOMEG00000020627	ptcd1	96	69.697	ENSACIG00000017861	ptcd1	97	69.697	Amphilophus_citrinellus
ENSOMEG00000020627	ptcd1	92	65.550	ENSAOCG00000022617	ptcd1	94	65.550	Amphiprion_ocellaris
ENSOMEG00000020627	ptcd1	99	65.000	ENSAOCG00000020741	-	96	65.000	Amphiprion_ocellaris
ENSOMEG00000020627	ptcd1	99	65.147	ENSAPEG00000022632	ptcd1	96	65.147	Amphiprion_percula
ENSOMEG00000020627	ptcd1	99	66.716	ENSATEG00000007016	ptcd1	96	66.716	Anabas_testudineus
ENSOMEG00000020627	ptcd1	84	50.262	ENSAPLG00000006862	-	90	50.087	Anas_platyrhynchos
ENSOMEG00000020627	ptcd1	87	48.505	ENSACAG00000012871	-	79	48.505	Anolis_carolinensis
ENSOMEG00000020627	ptcd1	87	46.645	ENSANAG00000035790	-	90	46.117	Aotus_nancymaae
ENSOMEG00000020627	ptcd1	99	68.429	ENSACLG00000002824	ptcd1	96	68.429	Astatotilapia_calliptera
ENSOMEG00000020627	ptcd1	89	50.078	ENSAMXG00000037292	ptcd1	89	50.391	Astyanax_mexicanus
ENSOMEG00000020627	ptcd1	87	47.488	ENSBTAG00000020440	-	74	48.208	Bos_taurus
ENSOMEG00000020627	ptcd1	89	47.021	ENSCJAG00000015815	-	88	46.880	Callithrix_jacchus
ENSOMEG00000020627	ptcd1	88	48.276	ENSCAFG00000015055	-	80	48.276	Canis_familiaris
ENSOMEG00000020627	ptcd1	88	48.276	ENSCAFG00020014480	-	80	48.276	Canis_lupus_dingo
ENSOMEG00000020627	ptcd1	87	48.276	ENSCHIG00000027000	-	85	48.525	Capra_hircus
ENSOMEG00000020627	ptcd1	88	47.078	ENSTSYG00000029495	-	96	44.718	Carlito_syrichta
ENSOMEG00000020627	ptcd1	85	48.288	ENSCAPG00000014660	-	89	48.129	Cavia_aperea
ENSOMEG00000020627	ptcd1	85	49.231	ENSCPOG00000001780	-	83	49.066	Cavia_porcellus
ENSOMEG00000020627	ptcd1	86	48.000	ENSCCAG00000034025	-	87	47.419	Cebus_capucinus
ENSOMEG00000020627	ptcd1	87	48.744	ENSCATG00000040859	-	85	48.752	Cercocebus_atys
ENSOMEG00000020627	ptcd1	86	48.430	ENSCLAG00000006354	-	90	47.368	Chinchilla_lanigera
ENSOMEG00000020627	ptcd1	81	48.108	ENSCSAG00000017794	-	82	48.301	Chlorocebus_sabaeus
ENSOMEG00000020627	ptcd1	88	46.264	ENSCPBG00000020866	-	82	47.438	Chrysemys_picta_bellii
ENSOMEG00000020627	ptcd1	78	30.127	ENSCING00000007717	-	92	30.127	Ciona_intestinalis
ENSOMEG00000020627	ptcd1	90	47.444	ENSCANG00000023441	-	89	47.218	Colobus_angolensis_palliatus
ENSOMEG00000020627	ptcd1	88	48.440	ENSCGRG00001023686	Ptcd1	86	48.852	Cricetulus_griseus_chok1gshd
ENSOMEG00000020627	ptcd1	88	48.440	ENSCGRG00000015031	Ptcd1	86	48.852	Cricetulus_griseus_crigri
ENSOMEG00000020627	ptcd1	98	60.837	ENSCSEG00000002378	ptcd1	94	60.987	Cynoglossus_semilaevis
ENSOMEG00000020627	ptcd1	95	69.449	ENSCVAG00000003621	ptcd1	97	69.279	Cyprinodon_variegatus
ENSOMEG00000020627	ptcd1	98	68.939	ENSCVAG00000015826	ptcd1	94	68.939	Cyprinodon_variegatus
ENSOMEG00000020627	ptcd1	95	48.788	ENSDARG00000076176	ptcd1	92	48.788	Danio_rerio
ENSOMEG00000020627	ptcd1	89	47.068	ENSDNOG00000009957	-	91	45.413	Dasypus_novemcinctus
ENSOMEG00000020627	ptcd1	86	48.167	ENSDORG00000000740	Ptcd1	87	48.179	Dipodomys_ordii
ENSOMEG00000020627	ptcd1	86	39.571	ENSEBUG00000014515	ptcd1	93	39.893	Eptatretus_burgeri
ENSOMEG00000020627	ptcd1	91	46.986	ENSEASG00005002480	-	90	47.278	Equus_asinus_asinus
ENSOMEG00000020627	ptcd1	91	47.141	ENSECAG00000016617	-	90	47.434	Equus_caballus
ENSOMEG00000020627	ptcd1	95	56.587	ENSELUG00000016517	ptcd1	90	56.587	Esox_lucius
ENSOMEG00000020627	ptcd1	87	49.172	ENSFCAG00000015069	-	85	49.172	Felis_catus
ENSOMEG00000020627	ptcd1	84	47.885	ENSFALG00000013803	-	82	48.311	Ficedula_albicollis
ENSOMEG00000020627	ptcd1	92	47.956	ENSFDAG00000006393	-	90	47.956	Fukomys_damarensis
ENSOMEG00000020627	ptcd1	79	75.189	ENSFHEG00000012491	ptcd1	92	75.189	Fundulus_heteroclitus
ENSOMEG00000020627	ptcd1	88	61.824	ENSGMOG00000007639	ptcd1	95	61.824	Gadus_morhua
ENSOMEG00000020627	ptcd1	84	48.316	ENSGALG00000004711	-	83	48.316	Gallus_gallus
ENSOMEG00000020627	ptcd1	95	68.624	ENSGAFG00000013175	ptcd1	96	67.211	Gambusia_affinis
ENSOMEG00000020627	ptcd1	91	68.679	ENSGACG00000016607	ptcd1	95	68.679	Gasterosteus_aculeatus
ENSOMEG00000020627	ptcd1	82	48.221	ENSGAGG00000021832	-	85	47.513	Gopherus_agassizii
ENSOMEG00000020627	ptcd1	88	47.326	ENSGGOG00000015123	-	87	47.182	Gorilla_gorilla
ENSOMEG00000020627	ptcd1	99	68.576	ENSHBUG00000018275	ptcd1	96	68.576	Haplochromis_burtoni
ENSOMEG00000020627	ptcd1	89	49.677	ENSHGLG00000017621	-	88	49.758	Heterocephalus_glaber_female
ENSOMEG00000020627	ptcd1	89	49.677	ENSHGLG00100007218	-	88	49.758	Heterocephalus_glaber_male
ENSOMEG00000020627	ptcd1	97	58.959	ENSHCOG00000010784	ptcd1	94	59.571	Hippocampus_comes
ENSOMEG00000020627	ptcd1	87	49.172	ENSSTOG00000001682	-	85	49.172	Ictidomys_tridecemlineatus
ENSOMEG00000020627	ptcd1	88	48.039	ENSJJAG00000000319	Ptcd1	88	48.371	Jaculus_jaculus
ENSOMEG00000020627	ptcd1	99	67.162	ENSKMAG00000008708	ptcd1	96	67.162	Kryptolebias_marmoratus
ENSOMEG00000020627	ptcd1	98	62.811	ENSLBEG00000008061	ptcd1	95	62.811	Labrus_bergylta
ENSOMEG00000020627	ptcd1	89	49.342	ENSLACG00000011172	ptcd1	86	49.342	Latimeria_chalumnae
ENSOMEG00000020627	ptcd1	87	52.181	ENSLOCG00000004833	ptcd1	93	51.505	Lepisosteus_oculatus
ENSOMEG00000020627	ptcd1	85	48.161	ENSLAFG00000002588	-	83	48.161	Loxodonta_africana
ENSOMEG00000020627	ptcd1	87	48.744	ENSMFAG00000041324	-	85	48.752	Macaca_fascicularis
ENSOMEG00000020627	ptcd1	87	48.576	ENSMMUG00000030408	-	85	48.419	Macaca_mulatta
ENSOMEG00000020627	ptcd1	87	48.744	ENSMNEG00000043786	-	85	48.586	Macaca_nemestrina
ENSOMEG00000020627	ptcd1	87	36.224	ENSMLEG00000031179	-	83	37.500	Mandrillus_leucophaeus
ENSOMEG00000020627	ptcd1	99	65.390	ENSMAMG00000007623	ptcd1	95	65.390	Mastacembelus_armatus
ENSOMEG00000020627	ptcd1	99	68.135	ENSMZEG00005012722	ptcd1	96	68.135	Maylandia_zebra
ENSOMEG00000020627	ptcd1	86	48.852	ENSMGAG00000004211	-	80	48.852	Meleagris_gallopavo
ENSOMEG00000020627	ptcd1	88	45.806	ENSMICG00000017428	-	87	46.141	Microcebus_murinus
ENSOMEG00000020627	ptcd1	99	65.657	ENSMMOG00000020243	ptcd1	92	71.669	Mola_mola
ENSOMEG00000020627	ptcd1	89	45.455	ENSMODG00000001350	-	85	45.455	Monodelphis_domestica
ENSOMEG00000020627	ptcd1	99	63.450	ENSMALG00000018442	ptcd1	95	63.450	Monopterus_albus
ENSOMEG00000020627	ptcd1	91	46.562	MGP_CAROLIEiJ_G0028011	Ptcd1	90	46.479	Mus_caroli
ENSOMEG00000020627	ptcd1	91	46.900	ENSMUSG00000029624	Ptcd1	90	47.218	Mus_musculus
ENSOMEG00000020627	ptcd1	91	46.562	MGP_PahariEiJ_G0024580	Ptcd1	90	47.022	Mus_pahari
ENSOMEG00000020627	ptcd1	91	46.406	MGP_SPRETEiJ_G0029012	Ptcd1	90	46.635	Mus_spretus
ENSOMEG00000020627	ptcd1	87	49.503	ENSMPUG00000016518	-	85	49.420	Mustela_putorius_furo
ENSOMEG00000020627	ptcd1	86	49.088	ENSMLUG00000010994	-	85	47.130	Myotis_lucifugus
ENSOMEG00000020627	ptcd1	99	65.886	ENSNBRG00000010079	ptcd1	96	68.533	Neolamprologus_brichardi
ENSOMEG00000020627	ptcd1	77	47.417	ENSNLEG00000011060	-	90	47.417	Nomascus_leucogenys
ENSOMEG00000020627	ptcd1	89	45.396	ENSMEUG00000006930	-	87	45.396	Notamacropus_eugenii
ENSOMEG00000020627	ptcd1	75	58.559	ENSOPRG00000013647	-	74	58.559	Ochotona_princeps
ENSOMEG00000020627	ptcd1	89	69.463	ENSONIG00000003168	ptcd1	99	69.463	Oreochromis_niloticus
ENSOMEG00000020627	ptcd1	83	45.593	ENSOANG00000007728	-	76	45.593	Ornithorhynchus_anatinus
ENSOMEG00000020627	ptcd1	85	49.402	ENSOCUG00000010584	-	82	49.236	Oryctolagus_cuniculus
ENSOMEG00000020627	ptcd1	99	85.180	ENSORLG00000009275	ptcd1	99	85.180	Oryzias_latipes
ENSOMEG00000020627	ptcd1	99	84.858	ENSORLG00020000988	ptcd1	99	84.858	Oryzias_latipes_hni
ENSOMEG00000020627	ptcd1	99	84.708	ENSORLG00015010557	ptcd1	99	84.708	Oryzias_latipes_hsok
ENSOMEG00000020627	ptcd1	92	44.961	ENSOGAG00000010877	-	91	45.216	Otolemur_garnettii
ENSOMEG00000020627	ptcd1	87	45.114	ENSOARG00000018676	-	85	45.366	Ovis_aries
ENSOMEG00000020627	ptcd1	88	47.002	ENSPPAG00000036024	-	87	47.011	Pan_paniscus
ENSOMEG00000020627	ptcd1	87	49.503	ENSPPRG00000003478	-	86	49.503	Panthera_pardus
ENSOMEG00000020627	ptcd1	88	47.164	ENSPTRG00000019452	-	87	47.173	Pan_troglodytes
ENSOMEG00000020627	ptcd1	87	48.911	ENSPANG00000016730	-	85	48.918	Papio_anubis
ENSOMEG00000020627	ptcd1	87	51.282	ENSPKIG00000014215	ptcd1	87	51.852	Paramormyrops_kingsleyae
ENSOMEG00000020627	ptcd1	84	47.513	ENSPSIG00000011184	-	97	48.027	Pelodiscus_sinensis
ENSOMEG00000020627	ptcd1	75	42.065	ENSPMAG00000009667	ptcd1	100	42.065	Petromyzon_marinus
ENSOMEG00000020627	ptcd1	89	45.925	ENSPCIG00000024778	-	85	45.925	Phascolarctos_cinereus
ENSOMEG00000020627	ptcd1	96	67.580	ENSPFOG00000004458	ptcd1	96	66.276	Poecilia_formosa
ENSOMEG00000020627	ptcd1	96	68.092	ENSPLAG00000011051	ptcd1	94	67.362	Poecilia_latipinna
ENSOMEG00000020627	ptcd1	96	67.841	ENSPMEG00000020547	ptcd1	96	66.276	Poecilia_mexicana
ENSOMEG00000020627	ptcd1	94	67.290	ENSPREG00000000059	ptcd1	95	66.024	Poecilia_reticulata
ENSOMEG00000020627	ptcd1	89	46.699	ENSPPYG00000017377	-	92	46.699	Pongo_abelii
ENSOMEG00000020627	ptcd1	77	55.645	ENSPCAG00000001852	-	83	55.645	Procavia_capensis
ENSOMEG00000020627	ptcd1	86	47.430	ENSPCOG00000018596	-	89	46.875	Propithecus_coquereli
ENSOMEG00000020627	ptcd1	57	56.115	ENSPVAG00000007529	-	58	56.115	Pteropus_vampyrus
ENSOMEG00000020627	ptcd1	99	68.282	ENSPNYG00000019993	ptcd1	96	68.282	Pundamilia_nyererei
ENSOMEG00000020627	ptcd1	86	52.931	ENSPNAG00000014931	ptcd1	89	51.525	Pygocentrus_nattereri
ENSOMEG00000020627	ptcd1	91	47.179	ENSRNOG00000000987	Ptcd1	91	47.642	Rattus_norvegicus
ENSOMEG00000020627	ptcd1	87	47.642	ENSRBIG00000043393	-	86	47.411	Rhinopithecus_bieti
ENSOMEG00000020627	ptcd1	87	48.756	ENSRROG00000036420	-	86	48.515	Rhinopithecus_roxellana
ENSOMEG00000020627	ptcd1	89	46.314	ENSSBOG00000024114	-	96	44.186	Saimiri_boliviensis_boliviensis
ENSOMEG00000020627	ptcd1	85	47.288	ENSSHAG00000011376	-	88	47.288	Sarcophilus_harrisii
ENSOMEG00000020627	ptcd1	89	51.530	ENSSFOG00015007909	ptcd1	84	52.013	Scleropages_formosus
ENSOMEG00000020627	ptcd1	87	65.709	ENSSMAG00000000218	ptcd1	93	65.709	Scophthalmus_maximus
ENSOMEG00000020627	ptcd1	99	65.123	ENSSDUG00000015671	ptcd1	97	67.164	Seriola_dumerili
ENSOMEG00000020627	ptcd1	96	67.066	ENSSLDG00000014261	ptcd1	96	67.066	Seriola_lalandi_dorsalis
ENSOMEG00000020627	ptcd1	88	46.240	ENSSPUG00000003540	-	88	45.161	Sphenodon_punctatus
ENSOMEG00000020627	ptcd1	99	66.618	ENSSPAG00000011049	ptcd1	95	66.910	Stegastes_partitus
ENSOMEG00000020627	ptcd1	86	48.760	ENSSSCG00000007622	-	90	48.604	Sus_scrofa
ENSOMEG00000020627	ptcd1	84	48.511	ENSTGUG00000007563	-	94	48.511	Taeniopygia_guttata
ENSOMEG00000020627	ptcd1	99	62.428	ENSTRUG00000013471	ptcd1	96	62.428	Takifugu_rubripes
ENSOMEG00000020627	ptcd1	93	66.667	ENSTNIG00000008271	ptcd1	91	66.667	Tetraodon_nigroviridis
ENSOMEG00000020627	ptcd1	87	47.273	ENSTBEG00000011021	-	86	47.273	Tupaia_belangeri
ENSOMEG00000020627	ptcd1	87	48.154	ENSTTRG00000003006	-	85	48.154	Tursiops_truncatus
ENSOMEG00000020627	ptcd1	87	48.350	ENSUAMG00000008049	-	85	48.671	Ursus_americanus
ENSOMEG00000020627	ptcd1	89	48.534	ENSVVUG00000008836	-	87	48.534	Vulpes_vulpes
ENSOMEG00000020627	ptcd1	85	48.370	ENSXETG00000009891	ptcd1	84	48.630	Xenopus_tropicalis
ENSOMEG00000020627	ptcd1	95	69.243	ENSXMAG00000015540	ptcd1	96	67.656	Xiphophorus_maculatus