EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSOMEG00000020786 (Gene tree)
Gene ID: 112150475
Gene Symbol: ncl
Alias: -
Full Name: nucleolin
Gene Type: protein_coding
Species: Oryzias_melastigma
Status: putative
Strand: Minus strand
Length: 7143 bases
Position: chrNVQA01000014.1:12033390-12040532
Accession: 112150475
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOMEP00000034266	RRM_1	PF00076.22	4.9e-61	1	4
ENSOMEP00000034266	RRM_1	PF00076.22	4.9e-61	2	4
ENSOMEP00000034266	RRM_1	PF00076.22	4.9e-61	3	4
ENSOMEP00000034266	RRM_1	PF00076.22	4.9e-61	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOMET00000028115	-	3724	-	ENSOMEP00000034266	744 (aa)	XP_024134601	UPI000CF7C092

Gene Model

Click here to download ENSOMEG00000020786's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOMEG00000020786's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSOMEG00000020786	ncl	50	39.241	ENSOMEG00000015864	-	81	38.482

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOMEG00000020786	ncl	68	83.135	ENSAPOG00000023888	ncl	67	85.333	Acanthochromis_polyacanthus
ENSOMEG00000020786	ncl	69	37.385	ENSAPOG00000014534	-	67	42.711	Acanthochromis_polyacanthus
ENSOMEG00000020786	ncl	51	77.128	ENSACIG00000013234	ncl	62	77.333	Amphilophus_citrinellus
ENSOMEG00000020786	ncl	66	84.834	ENSAOCG00000003133	ncl	53	86.400	Amphiprion_ocellaris
ENSOMEG00000020786	ncl	55	39.860	ENSAOCG00000014792	-	61	41.406	Amphiprion_ocellaris
ENSOMEG00000020786	ncl	66	83.848	ENSAPEG00000002769	ncl	59	83.848	Amphiprion_percula
ENSOMEG00000020786	ncl	55	40.093	ENSAPEG00000013612	-	60	41.667	Amphiprion_percula
ENSOMEG00000020786	ncl	57	44.176	ENSATEG00000019862	-	80	45.220	Anabas_testudineus
ENSOMEG00000020786	ncl	63	83.656	ENSATEG00000013343	ncl	54	86.400	Anabas_testudineus
ENSOMEG00000020786	ncl	54	55.309	ENSAPLG00000012897	-	63	57.560	Anas_platyrhynchos
ENSOMEG00000020786	ncl	64	66.098	ENSAMXG00000001647	ncl	84	69.536	Astyanax_mexicanus
ENSOMEG00000020786	ncl	50	60.789	ENSCPBG00000016444	-	56	60.686	Chrysemys_picta_bellii
ENSOMEG00000020786	ncl	65	80.229	ENSCSEG00000015089	ncl	57	81.266	Cynoglossus_semilaevis
ENSOMEG00000020786	ncl	67	74.292	ENSDARG00000002710	ncl	83	76.206	Danio_rerio
ENSOMEG00000020786	ncl	51	46.475	ENSDNOG00000040257	-	63	45.876	Dasypus_novemcinctus
ENSOMEG00000020786	ncl	57	74.353	ENSELUG00000006033	ncl	61	73.902	Esox_lucius
ENSOMEG00000020786	ncl	56	47.143	ENSELUG00000022826	-	80	49.330	Esox_lucius
ENSOMEG00000020786	ncl	64	56.201	ENSFALG00000007592	-	54	56.201	Ficedula_albicollis
ENSOMEG00000020786	ncl	51	68.586	ENSGMOG00000001341	ncl	59	68.097	Gadus_morhua
ENSOMEG00000020786	ncl	84	68.319	ENSGACG00000008970	ncl	61	80.000	Gasterosteus_aculeatus
ENSOMEG00000020786	ncl	57	59.080	ENSGAGG00000013330	-	56	60.686	Gopherus_agassizii
ENSOMEG00000020786	ncl	57	83.373	ENSKMAG00000008111	ncl	54	86.096	Kryptolebias_marmoratus
ENSOMEG00000020786	ncl	61	42.405	ENSLBEG00000007915	-	66	44.987	Labrus_bergylta
ENSOMEG00000020786	ncl	52	44.125	ENSLBEG00000014278	-	85	44.505	Labrus_bergylta
ENSOMEG00000020786	ncl	81	52.265	ENSLACG00000009328	ncl	73	65.301	Latimeria_chalumnae
ENSOMEG00000020786	ncl	57	50.356	ENSLACG00000022167	-	76	52.661	Latimeria_chalumnae
ENSOMEG00000020786	ncl	63	63.753	ENSLOCG00000004828	ncl	51	69.437	Lepisosteus_oculatus
ENSOMEG00000020786	ncl	55	40.749	ENSMAMG00000003479	-	69	41.667	Mastacembelus_armatus
ENSOMEG00000020786	ncl	77	82.289	ENSMAMG00000002086	ncl	51	83.610	Mastacembelus_armatus
ENSOMEG00000020786	ncl	50	57.623	ENSMODG00000002470	-	54	57.922	Monodelphis_domestica
ENSOMEG00000020786	ncl	82	70.510	ENSMALG00000014827	ncl	71	82.051	Monopterus_albus
ENSOMEG00000020786	ncl	50	40.267	ENSONIG00000010631	-	97	40.107	Oreochromis_niloticus
ENSOMEG00000020786	ncl	70	57.412	ENSOANG00000008732	-	60	60.526	Ornithorhynchus_anatinus
ENSOMEG00000020786	ncl	57	37.978	ENSORLG00000004645	-	83	39.948	Oryzias_latipes
ENSOMEG00000020786	ncl	57	37.892	ENSORLG00020003497	-	74	39.948	Oryzias_latipes_hni
ENSOMEG00000020786	ncl	69	80.545	ENSORLG00015013815	ncl	87	91.987	Oryzias_latipes_hsok
ENSOMEG00000020786	ncl	57	37.668	ENSORLG00015006613	-	77	39.948	Oryzias_latipes_hsok
ENSOMEG00000020786	ncl	57	74.764	ENSPKIG00000002604	ncl	53	77.688	Paramormyrops_kingsleyae
ENSOMEG00000020786	ncl	50	59.896	ENSPSIG00000002361	-	53	59.269	Pelodiscus_sinensis
ENSOMEG00000020786	ncl	50	58.398	ENSPCIG00000003293	-	53	58.701	Phascolarctos_cinereus
ENSOMEG00000020786	ncl	63	78.769	ENSPFOG00000024205	ncl	52	82.415	Poecilia_formosa
ENSOMEG00000020786	ncl	63	78.981	ENSPLAG00000024026	ncl	52	82.415	Poecilia_latipinna
ENSOMEG00000020786	ncl	63	79.618	ENSPMEG00000006000	ncl	52	82.415	Poecilia_mexicana
ENSOMEG00000020786	ncl	56	68.483	ENSPNAG00000006192	ncl	56	69.927	Pygocentrus_nattereri
ENSOMEG00000020786	ncl	51	44.540	ENSSFOG00015013153	-	78	46.429	Scleropages_formosus
ENSOMEG00000020786	ncl	67	81.132	ENSSMAG00000021241	ncl	54	83.554	Scophthalmus_maximus
ENSOMEG00000020786	ncl	51	45.013	ENSSMAG00000007582	-	61	44.737	Scophthalmus_maximus
ENSOMEG00000020786	ncl	68	38.041	ENSSDUG00000010922	-	70	42.448	Seriola_dumerili
ENSOMEG00000020786	ncl	67	82.505	ENSSDUG00000006128	ncl	86	86.933	Seriola_dumerili
ENSOMEG00000020786	ncl	63	84.516	ENSSLDG00000002012	ncl	53	86.400	Seriola_lalandi_dorsalis
ENSOMEG00000020786	ncl	52	43.000	ENSSLDG00000015784	-	65	43.194	Seriola_lalandi_dorsalis
ENSOMEG00000020786	ncl	50	60.154	ENSSPUG00000008244	-	59	60.309	Sphenodon_punctatus
ENSOMEG00000020786	ncl	52	43.250	ENSSPAG00000001859	-	61	42.820	Stegastes_partitus
ENSOMEG00000020786	ncl	50	55.102	ENSTGUG00000009782	-	60	56.806	Taeniopygia_guttata
ENSOMEG00000020786	ncl	57	76.832	ENSTRUG00000008185	ncl	55	79.679	Takifugu_rubripes
ENSOMEG00000020786	ncl	50	61.053	ENSXETG00000009517	ncl	54	62.069	Xenopus_tropicalis
ENSOMEG00000020786	ncl	51	67.553	ENSXCOG00000003524	ncl	88	65.867	Xiphophorus_couchianus
ENSOMEG00000020786	ncl	50	39.589	ENSXCOG00000007369	-	89	40.526	Xiphophorus_couchianus
ENSOMEG00000020786	ncl	51	84.514	ENSXMAG00000005914	ncl	52	84.514	Xiphophorus_maculatus