EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSOMEG00000021330 (Gene tree)
Gene ID: 112136525
Gene Symbol: smg5
Alias: -
Full Name: SMG5 nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Oryzias_melastigma
Status: putative
Strand: Minus strand
Length: 18632 bases
Position: chrNVQA01000034.1:3799759-3818390
Accession: ZDB-GENE-050913-144
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOMEP00000019484	EST1	PF10374.9	9.8e-24	1	1
ENSOMEP00000019518	EST1	PF10374.9	1e-23	1	1
ENSOMEP00000019433	EST1	PF10374.9	1.2e-20	1	1
ENSOMEP00000019518	EST1_DNA_bind	PF10373.9	8.4e-42	1	1
ENSOMEP00000019484	EST1_DNA_bind	PF10373.9	2.9e-33	1	1
ENSOMEP00000019433	EST1_DNA_bind	PF10373.9	8e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOMET00000028673	-	1824	-	ENSOMEP00000019433	607 (aa)	-	-
ENSOMET00000035708	-	3707	-	ENSOMEP00000019518	1004 (aa)	-	-
ENSOMET00000028739	-	3638	-	ENSOMEP00000019484	981 (aa)	-	-

Gene Model

Click here to download ENSOMEG00000021330's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOMEG00000021330's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOMEG00000021330	smg5	93	84.915	ENSAPOG00000019690	smg5	84	85.428	Acanthochromis_polyacanthus
ENSOMEG00000021330	smg5	90	58.843	ENSAMEG00000014458	SMG5	82	57.987	Ailuropoda_melanoleuca
ENSOMEG00000021330	smg5	92	79.936	ENSACIG00000001353	smg5	82	78.710	Amphilophus_citrinellus
ENSOMEG00000021330	smg5	92	86.772	ENSAOCG00000019483	smg5	84	85.790	Amphiprion_ocellaris
ENSOMEG00000021330	smg5	92	86.561	ENSAPEG00000022949	smg5	84	85.896	Amphiprion_percula
ENSOMEG00000021330	smg5	92	84.517	ENSATEG00000005348	smg5	84	84.771	Anabas_testudineus
ENSOMEG00000021330	smg5	90	61.889	ENSAPLG00000010263	SMG5	82	60.823	Anas_platyrhynchos
ENSOMEG00000021330	smg5	92	60.707	ENSANAG00000032899	SMG5	82	59.657	Aotus_nancymaae
ENSOMEG00000021330	smg5	93	85.539	ENSACLG00000009311	smg5	84	84.428	Astatotilapia_calliptera
ENSOMEG00000021330	smg5	87	82.921	ENSAMXG00000024616	smg5	83	75.133	Astyanax_mexicanus
ENSOMEG00000021330	smg5	92	60.493	ENSBTAG00000009435	SMG5	82	60.065	Bos_taurus
ENSOMEG00000021330	smg5	98	37.500	ENSBTAG00000021747	-	67	50.732	Bos_taurus
ENSOMEG00000021330	smg5	92	60.600	ENSCJAG00000005684	SMG5	85	59.549	Callithrix_jacchus
ENSOMEG00000021330	smg5	92	60.430	ENSCHIG00000007709	SMG5	82	60.215	Capra_hircus
ENSOMEG00000021330	smg5	92	39.116	ENSCHIG00000006323	-	67	51.250	Capra_hircus
ENSOMEG00000021330	smg5	92	60.171	ENSTSYG00000004099	SMG5	82	58.906	Carlito_syrichta
ENSOMEG00000021330	smg5	89	44.085	ENSCAPG00000003631	SMG5	80	43.587	Cavia_aperea
ENSOMEG00000021330	smg5	92	60.493	ENSCCAG00000027409	SMG5	82	59.227	Cebus_capucinus
ENSOMEG00000021330	smg5	57	75.451	ENSCHOG00000008741	-	57	75.451	Choloepus_hoffmanni
ENSOMEG00000021330	smg5	86	60.182	ENSCPBG00000025848	SMG5	82	59.637	Chrysemys_picta_bellii
ENSOMEG00000021330	smg5	89	30.017	ENSCING00000008706	-	71	38.250	Ciona_intestinalis
ENSOMEG00000021330	smg5	82	41.333	ENSCGRG00001000584	-	71	52.062	Cricetulus_griseus_chok1gshd
ENSOMEG00000021330	smg5	92	60.258	ENSCGRG00001006336	Smg5	82	58.432	Cricetulus_griseus_chok1gshd
ENSOMEG00000021330	smg5	62	48.387	ENSCGRG00000009566	-	84	51.804	Cricetulus_griseus_crigri
ENSOMEG00000021330	smg5	90	60.022	ENSCGRG00000005111	Smg5	82	58.206	Cricetulus_griseus_crigri
ENSOMEG00000021330	smg5	93	80.410	ENSCSEG00000014220	smg5	84	80.508	Cynoglossus_semilaevis
ENSOMEG00000021330	smg5	92	69.003	ENSCVAG00000000529	smg5	81	68.202	Cyprinodon_variegatus
ENSOMEG00000021330	smg5	92	78.788	ENSDARG00000041481	smg5	84	75.370	Danio_rerio
ENSOMEG00000021330	smg5	94	32.060	ENSDNOG00000039862	-	69	39.523	Dasypus_novemcinctus
ENSOMEG00000021330	smg5	92	60.192	ENSDORG00000010382	Smg5	52	72.167	Dipodomys_ordii
ENSOMEG00000021330	smg5	85	58.632	ENSETEG00000010336	SMG5	70	60.741	Echinops_telfairi
ENSOMEG00000021330	smg5	77	56.041	ENSEBUG00000003739	smg5	79	45.664	Eptatretus_burgeri
ENSOMEG00000021330	smg5	92	60.776	ENSEASG00005019122	SMG5	82	59.120	Equus_asinus_asinus
ENSOMEG00000021330	smg5	55	78.409	ENSEEUG00000012690	SMG5	56	78.409	Erinaceus_europaeus
ENSOMEG00000021330	smg5	93	83.251	ENSELUG00000012585	smg5	84	79.025	Esox_lucius
ENSOMEG00000021330	smg5	85	62.104	ENSFALG00000001166	-	96	62.405	Ficedula_albicollis
ENSOMEG00000021330	smg5	90	59.934	ENSFDAG00000017388	SMG5	54	69.762	Fukomys_damarensis
ENSOMEG00000021330	smg5	90	73.730	ENSFHEG00000013939	smg5	76	84.286	Fundulus_heteroclitus
ENSOMEG00000021330	smg5	92	80.048	ENSGMOG00000007310	smg5	84	75.156	Gadus_morhua
ENSOMEG00000021330	smg5	92	62.848	ENSGALG00000029918	-	82	60.423	Gallus_gallus
ENSOMEG00000021330	smg5	55	46.744	ENSGALG00000049544	-	86	52.479	Gallus_gallus
ENSOMEG00000021330	smg5	84	84.091	ENSGAFG00000021691	smg5	82	84.091	Gambusia_affinis
ENSOMEG00000021330	smg5	92	82.997	ENSGACG00000013142	smg5	84	82.678	Gasterosteus_aculeatus
ENSOMEG00000021330	smg5	92	62.766	ENSGAGG00000016131	SMG5	82	60.870	Gopherus_agassizii
ENSOMEG00000021330	smg5	92	60.814	ENSGGOG00000010932	SMG5	74	77.752	Gorilla_gorilla
ENSOMEG00000021330	smg5	93	85.539	ENSHBUG00000008654	smg5	84	84.249	Haplochromis_burtoni
ENSOMEG00000021330	smg5	92	59.315	ENSHGLG00000019152	SMG5	82	59.506	Heterocephalus_glaber_female
ENSOMEG00000021330	smg5	92	59.247	ENSHGLG00100015948	SMG5	90	59.439	Heterocephalus_glaber_male
ENSOMEG00000021330	smg5	89	66.018	ENSHCOG00000010229	smg5	72	81.412	Hippocampus_comes
ENSOMEG00000021330	smg5	93	82.222	ENSIPUG00000006624	Smg5	84	75.133	Ictalurus_punctatus
ENSOMEG00000021330	smg5	92	60.619	ENSSTOG00000001780	SMG5	82	60.884	Ictidomys_tridecemlineatus
ENSOMEG00000021330	smg5	93	86.241	ENSKMAG00000014586	smg5	84	86.532	Kryptolebias_marmoratus
ENSOMEG00000021330	smg5	93	86.207	ENSLBEG00000002145	smg5	84	84.183	Labrus_bergylta
ENSOMEG00000021330	smg5	92	57.754	ENSLACG00000010521	SMG5	82	57.249	Latimeria_chalumnae
ENSOMEG00000021330	smg5	93	72.228	ENSLOCG00000008380	smg5	99	72.169	Lepisosteus_oculatus
ENSOMEG00000021330	smg5	92	60.475	ENSLAFG00000006241	SMG5	81	58.842	Loxodonta_africana
ENSOMEG00000021330	smg5	92	60.814	ENSMMUG00000000090	SMG5	82	60.345	Macaca_mulatta
ENSOMEG00000021330	smg5	93	84.767	ENSMAMG00000010683	smg5	84	84.289	Mastacembelus_armatus
ENSOMEG00000021330	smg5	92	79.015	ENSMZEG00005015815	smg5	83	78.863	Maylandia_zebra
ENSOMEG00000021330	smg5	56	67.273	ENSMZEG00005016543	smg5	72	67.153	Maylandia_zebra
ENSOMEG00000021330	smg5	92	59.398	ENSMAUG00000010381	Smg5	82	58.539	Mesocricetus_auratus
ENSOMEG00000021330	smg5	84	41.084	ENSMAUG00000000043	-	75	49.882	Mesocricetus_auratus
ENSOMEG00000021330	smg5	92	60.649	ENSMICG00000002257	SMG5	82	60.086	Microcebus_murinus
ENSOMEG00000021330	smg5	72	45.652	ENSMOCG00000008423	-	68	51.741	Microtus_ochrogaster
ENSOMEG00000021330	smg5	92	59.786	ENSMOCG00000016590	Smg5	52	70.936	Microtus_ochrogaster
ENSOMEG00000021330	smg5	94	81.068	ENSMMOG00000017199	smg5	84	79.092	Mola_mola
ENSOMEG00000021330	smg5	61	34.184	ENSMODG00000004532	-	61	36.725	Monodelphis_domestica
ENSOMEG00000021330	smg5	65	32.536	ENSMODG00000004735	-	70	34.053	Monodelphis_domestica
ENSOMEG00000021330	smg5	64	33.562	ENSMODG00000004511	-	60	36.104	Monodelphis_domestica
ENSOMEG00000021330	smg5	70	33.486	ENSMODG00000010675	-	73	34.048	Monodelphis_domestica
ENSOMEG00000021330	smg5	61	32.000	ENSMODG00000021488	-	93	35.567	Monodelphis_domestica
ENSOMEG00000021330	smg5	92	60.345	ENSMODG00000016901	SMG5	64	57.601	Monodelphis_domestica
ENSOMEG00000021330	smg5	93	82.555	ENSMALG00000010375	smg5	84	82.447	Monopterus_albus
ENSOMEG00000021330	smg5	92	60.302	MGP_CAROLIEiJ_G0025163	Smg5	100	88.268	Mus_caroli
ENSOMEG00000021330	smg5	92	60.108	ENSMUSG00000001415	Smg5	99	88.268	Mus_musculus
ENSOMEG00000021330	smg5	92	60.432	MGP_PahariEiJ_G0026606	Smg5	100	88.827	Mus_pahari
ENSOMEG00000021330	smg5	92	59.892	MGP_SPRETEiJ_G0026104	Smg5	100	88.268	Mus_spretus
ENSOMEG00000021330	smg5	92	59.806	ENSMLUG00000008518	SMG5	82	58.930	Myotis_lucifugus
ENSOMEG00000021330	smg5	92	60.518	ENSNGAG00000020706	Smg5	81	59.184	Nannospalax_galili
ENSOMEG00000021330	smg5	87	39.616	ENSNGAG00000012101	-	67	49.876	Nannospalax_galili
ENSOMEG00000021330	smg5	92	72.610	ENSNBRG00000004332	smg5	82	73.069	Neolamprologus_brichardi
ENSOMEG00000021330	smg5	92	60.560	ENSMEUG00000012834	SMG5	82	59.322	Notamacropus_eugenii
ENSOMEG00000021330	smg5	92	59.957	ENSODEG00000012237	SMG5	82	59.486	Octodon_degus
ENSOMEG00000021330	smg5	93	85.749	ENSONIG00000008632	smg5	84	84.534	Oreochromis_niloticus
ENSOMEG00000021330	smg5	91	36.791	ENSOCUG00000023338	-	74	45.192	Oryctolagus_cuniculus
ENSOMEG00000021330	smg5	90	61.080	ENSOCUG00000012886	SMG5	82	60.639	Oryctolagus_cuniculus
ENSOMEG00000021330	smg5	92	94.737	ENSORLG00000016239	smg5	84	94.737	Oryzias_latipes
ENSOMEG00000021330	smg5	92	94.092	ENSORLG00020013127	smg5	84	93.878	Oryzias_latipes_hni
ENSOMEG00000021330	smg5	92	94.200	ENSORLG00015019014	smg5	84	93.985	Oryzias_latipes_hsok
ENSOMEG00000021330	smg5	92	59.506	ENSOGAG00000004966	SMG5	82	59.698	Otolemur_garnettii
ENSOMEG00000021330	smg5	92	38.844	ENSOARG00000011963	-	67	51.463	Ovis_aries
ENSOMEG00000021330	smg5	92	60.323	ENSOARG00000005778	SMG5	82	59.570	Ovis_aries
ENSOMEG00000021330	smg5	90	56.154	ENSPTIG00000007892	SMG5	72	75.682	Panthera_tigris_altaica
ENSOMEG00000021330	smg5	78	77.904	ENSPTRG00000049282	-	65	77.904	Pan_troglodytes
ENSOMEG00000021330	smg5	92	74.334	ENSPKIG00000009402	smg5	83	73.319	Paramormyrops_kingsleyae
ENSOMEG00000021330	smg5	90	62.678	ENSPSIG00000015198	SMG5	82	60.832	Pelodiscus_sinensis
ENSOMEG00000021330	smg5	92	75.056	ENSPMGG00000010465	smg5	83	69.362	Periophthalmus_magnuspinnatus
ENSOMEG00000021330	smg5	85	40.531	ENSPEMG00000010022	-	68	50.995	Peromyscus_maniculatus_bairdii
ENSOMEG00000021330	smg5	92	60.432	ENSPEMG00000001819	Smg5	82	58.539	Peromyscus_maniculatus_bairdii
ENSOMEG00000021330	smg5	63	57.568	ENSPMAG00000000410	smg5	59	45.426	Petromyzon_marinus
ENSOMEG00000021330	smg5	92	60.518	ENSPCIG00000018938	SMG5	81	58.085	Phascolarctos_cinereus
ENSOMEG00000021330	smg5	93	85.749	ENSPFOG00000010191	smg5	84	84.591	Poecilia_formosa
ENSOMEG00000021330	smg5	92	84.803	ENSPLAG00000009332	smg5	84	84.910	Poecilia_latipinna
ENSOMEG00000021330	smg5	93	85.749	ENSPMEG00000014105	smg5	84	84.272	Poecilia_mexicana
ENSOMEG00000021330	smg5	93	85.749	ENSPREG00000017713	smg5	84	84.803	Poecilia_reticulata
ENSOMEG00000021330	smg5	82	74.359	ENSPCAG00000008412	SMG5	76	74.359	Procavia_capensis
ENSOMEG00000021330	smg5	92	60.365	ENSPCOG00000004741	SMG5	82	60.649	Propithecus_coquereli
ENSOMEG00000021330	smg5	76	81.818	ENSPVAG00000016748	SMG5	82	52.620	Pteropus_vampyrus
ENSOMEG00000021330	smg5	93	83.333	ENSPNYG00000013397	smg5	84	83.368	Pundamilia_nyererei
ENSOMEG00000021330	smg5	92	75.372	ENSPNAG00000028363	smg5	83	75.372	Pygocentrus_nattereri
ENSOMEG00000021330	smg5	92	60.324	ENSRNOG00000019590	Smg5	82	58.754	Rattus_norvegicus
ENSOMEG00000021330	smg5	92	60.921	ENSSBOG00000033339	SMG5	82	59.764	Saimiri_boliviensis_boliviensis
ENSOMEG00000021330	smg5	90	59.846	ENSSHAG00000014163	SMG5	81	58.977	Sarcophilus_harrisii
ENSOMEG00000021330	smg5	63	39.259	ENSSHAG00000009572	-	61	41.278	Sarcophilus_harrisii
ENSOMEG00000021330	smg5	63	34.398	ENSSHAG00000000935	-	84	36.754	Sarcophilus_harrisii
ENSOMEG00000021330	smg5	73	32.500	ENSSHAG00000000561	-	65	37.532	Sarcophilus_harrisii
ENSOMEG00000021330	smg5	92	75.290	ENSSFOG00015024175	smg5	83	74.867	Scleropages_formosus
ENSOMEG00000021330	smg5	92	84.093	ENSSMAG00000013059	smg5	84	84.199	Scophthalmus_maximus
ENSOMEG00000021330	smg5	93	84.709	ENSSDUG00000007122	smg5	84	85.158	Seriola_dumerili
ENSOMEG00000021330	smg5	93	85.539	ENSSLDG00000011418	smg5	84	85.624	Seriola_lalandi_dorsalis
ENSOMEG00000021330	smg5	86	62.755	ENSSARG00000012484	SMG5	85	62.755	Sorex_araneus
ENSOMEG00000021330	smg5	86	59.977	ENSSPUG00000002260	SMG5	84	59.502	Sphenodon_punctatus
ENSOMEG00000021330	smg5	93	85.610	ENSSPAG00000014266	smg5	84	85.639	Stegastes_partitus
ENSOMEG00000021330	smg5	92	60.385	ENSSSCG00000006490	-	82	60.065	Sus_scrofa
ENSOMEG00000021330	smg5	92	45.792	ENSSSCG00000039308	-	73	57.005	Sus_scrofa
ENSOMEG00000021330	smg5	63	35.802	ENSSSCG00000037182	-	65	38.750	Sus_scrofa
ENSOMEG00000021330	smg5	92	62.959	ENSTGUG00000003748	-	82	60.986	Taeniopygia_guttata
ENSOMEG00000021330	smg5	93	78.208	ENSTRUG00000012580	smg5	84	76.850	Takifugu_rubripes
ENSOMEG00000021330	smg5	92	77.487	ENSTNIG00000010303	smg5	84	76.737	Tetraodon_nigroviridis
ENSOMEG00000021330	smg5	92	58.244	ENSTTRG00000001401	SMG5	82	58.127	Tursiops_truncatus
ENSOMEG00000021330	smg5	92	58.983	ENSUAMG00000013721	SMG5	81	57.895	Ursus_americanus
ENSOMEG00000021330	smg5	84	74.453	ENSUMAG00000018041	SMG5	76	74.645	Ursus_maritimus
ENSOMEG00000021330	smg5	92	60.000	ENSVVUG00000005887	SMG5	82	57.979	Vulpes_vulpes
ENSOMEG00000021330	smg5	69	52.624	ENSXETG00000033791	SMG5	77	51.502	Xenopus_tropicalis
ENSOMEG00000021330	smg5	93	71.906	ENSXCOG00000004379	smg5	79	83.471	Xiphophorus_couchianus
ENSOMEG00000021330	smg5	92	83.953	ENSXMAG00000013499	smg5	84	84.166	Xiphophorus_maculatus