EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSOMEG00000021469 (Gene tree)
Gene ID: 112147203
Gene Symbol: cirbpa
Alias: -
Full Name: cold inducible RNA binding protein
Gene Type: protein_coding
Species: Oryzias_melastigma
Status: putative
Strand: Minus strand
Length: 3950 bases
Position: chrNVQA01000011.1:10945468-10949417
Accession: 112147203
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOMEP00000034688	RRM_1	PF00076.22	1.6e-25	1	1
ENSOMEP00000034709	RRM_1	PF00076.22	1.6e-25	1	1
ENSOMEP00000034682	RRM_1	PF00076.22	1.6e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOMET00000028922	-	742	-	ENSOMEP00000034682	238 (aa)	XP_024129183	UPI000CF7C8A2
ENSOMET00000028941	-	816	-	ENSOMEP00000034709	235 (aa)	XP_024129184	UPI000CF7E3EB
ENSOMET00000028919	-	1739	-	ENSOMEP00000034688	235 (aa)	XP_024129184	UPI000CF7E3EB

Gene Model

Click here to download ENSOMEG00000021469's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOMEG00000021469's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSOMEG00000021469	cirbpa	71	44.737	ENSOMEG00000021030	-	50	45.205
ENSOMEG00000021469	cirbpa	80	42.683	ENSOMEG00000002000	-	52	43.038
ENSOMEG00000021469	cirbpa	53	48.684	ENSOMEG00000015959	-	50	50.704
ENSOMEG00000021469	cirbpa	74	39.216	ENSOMEG00000006903	-	51	42.667
ENSOMEG00000021469	cirbpa	80	36.000	ENSOMEG00000012368	-	56	36.082
ENSOMEG00000021469	cirbpa	84	36.000	ENSOMEG00000023475	-	56	36.082
ENSOMEG00000021469	cirbpa	78	43.421	ENSOMEG00000002509	-	54	43.836

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOMEG00000021469	cirbpa	52	82.707	ENSAPOG00000004458	cirbpa	100	67.172	Acanthochromis_polyacanthus
ENSOMEG00000021469	cirbpa	72	90.751	ENSACIG00000016116	cirbpa	100	85.311	Amphilophus_citrinellus
ENSOMEG00000021469	cirbpa	73	70.053	ENSAOCG00000016212	cirbpa	100	71.053	Amphiprion_ocellaris
ENSOMEG00000021469	cirbpa	73	70.745	ENSAPEG00000011989	cirbpa	100	73.262	Amphiprion_percula
ENSOMEG00000021469	cirbpa	73	83.607	ENSATEG00000014985	cirbpa	100	85.792	Anabas_testudineus
ENSOMEG00000021469	cirbpa	73	90.395	ENSACLG00000002094	-	100	86.441	Astatotilapia_calliptera
ENSOMEG00000021469	cirbpa	73	53.365	ENSAMXG00000015612	cirbpb	82	59.218	Astyanax_mexicanus
ENSOMEG00000021469	cirbpa	73	61.026	ENSCSEG00000014344	cirbpa	100	62.564	Cynoglossus_semilaevis
ENSOMEG00000021469	cirbpa	73	80.541	ENSCVAG00000004853	cirbpa	100	84.615	Cyprinodon_variegatus
ENSOMEG00000021469	cirbpa	73	54.545	ENSDARG00000103672	cirbpa	100	56.684	Danio_rerio
ENSOMEG00000021469	cirbpa	72	80.347	ENSFHEG00000002580	cirbpa	100	87.283	Fundulus_heteroclitus
ENSOMEG00000021469	cirbpa	76	50.244	ENSGMOG00000007179	cirbpb	98	54.315	Gadus_morhua
ENSOMEG00000021469	cirbpa	73	78.919	ENSGAFG00000008654	cirbpa	100	80.000	Gambusia_affinis
ENSOMEG00000021469	cirbpa	73	64.737	ENSGACG00000015206	cirbpa	100	67.895	Gasterosteus_aculeatus
ENSOMEG00000021469	cirbpa	73	80.435	ENSHBUG00000022060	cirbpa	100	82.320	Haplochromis_burtoni
ENSOMEG00000021469	cirbpa	73	84.571	ENSKMAG00000005905	cirbpa	100	82.558	Kryptolebias_marmoratus
ENSOMEG00000021469	cirbpa	73	65.714	ENSLBEG00000000292	cirbpa	100	64.571	Labrus_bergylta
ENSOMEG00000021469	cirbpa	73	75.410	ENSMAMG00000010168	cirbpa	100	82.514	Mastacembelus_armatus
ENSOMEG00000021469	cirbpa	73	80.435	ENSMZEG00005025577	-	100	82.320	Maylandia_zebra
ENSOMEG00000021469	cirbpa	72	75.978	ENSMALG00000020092	cirbpa	99	81.564	Monopterus_albus
ENSOMEG00000021469	cirbpa	73	80.435	ENSNBRG00000019658	cirbpa	100	82.320	Neolamprologus_brichardi
ENSOMEG00000021469	cirbpa	72	90.751	ENSONIG00000010169	cirbpa	100	85.311	Oreochromis_niloticus
ENSOMEG00000021469	cirbpa	73	98.276	ENSORLG00000015433	cirbpa	100	98.276	Oryzias_latipes
ENSOMEG00000021469	cirbpa	73	98.276	ENSORLG00020016909	cirbpa	100	98.276	Oryzias_latipes_hni
ENSOMEG00000021469	cirbpa	73	98.276	ENSORLG00015016636	cirbpa	100	98.276	Oryzias_latipes_hsok
ENSOMEG00000021469	cirbpa	72	71.823	ENSPMGG00000017342	cirbpa	95	68.947	Periophthalmus_magnuspinnatus
ENSOMEG00000021469	cirbpa	73	82.353	ENSPFOG00000015653	cirbpa	100	85.246	Poecilia_formosa
ENSOMEG00000021469	cirbpa	72	83.060	ENSPLAG00000011125	cirbpa	100	85.792	Poecilia_latipinna
ENSOMEG00000021469	cirbpa	73	82.796	ENSPMEG00000013878	cirbpa	100	85.792	Poecilia_mexicana
ENSOMEG00000021469	cirbpa	72	86.111	ENSPREG00000018042	cirbpa	98	84.153	Poecilia_reticulata
ENSOMEG00000021469	cirbpa	73	80.435	ENSPNYG00000007198	-	100	82.065	Pundamilia_nyererei
ENSOMEG00000021469	cirbpa	73	56.098	ENSPNAG00000019997	cirbpb	100	58.209	Pygocentrus_nattereri
ENSOMEG00000021469	cirbpa	73	58.824	ENSSFOG00015005346	cirbpb	100	64.171	Scleropages_formosus
ENSOMEG00000021469	cirbpa	73	66.162	ENSSMAG00000002412	cirbpa	100	66.162	Scophthalmus_maximus
ENSOMEG00000021469	cirbpa	73	75.723	ENSSDUG00000016099	cirbpa	100	73.410	Seriola_dumerili
ENSOMEG00000021469	cirbpa	73	68.539	ENSSPAG00000023037	cirbpa	99	71.186	Stegastes_partitus
ENSOMEG00000021469	cirbpa	73	79.191	ENSTRUG00000010187	cirbpa	100	75.145	Takifugu_rubripes
ENSOMEG00000021469	cirbpa	73	79.558	ENSTNIG00000000450	cirbpa	100	80.110	Tetraodon_nigroviridis
ENSOMEG00000021469	cirbpa	72	84.444	ENSXCOG00000008262	cirbpa	92	97.260	Xiphophorus_couchianus
ENSOMEG00000021469	cirbpa	73	84.239	ENSXMAG00000019336	cirbpa	100	83.696	Xiphophorus_maculatus