EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSOMEG00000023420 (Gene tree)
Gene ID: 112157136
Gene Symbol: UPF2
Alias: -
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Oryzias_melastigma
Status: putative
Strand: Plus strand
Length: 29469 bases
Position: chrNVQA01000003.1:17939321-17968789
Accession: 17854
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOMEP00000021532	Upf2	PF04050.14	1.1e-32	1	1
ENSOMEP00000021532	MIF4G	PF02854.19	2.4e-54	1	3
ENSOMEP00000021532	MIF4G	PF02854.19	2.4e-54	2	3
ENSOMEP00000021532	MIF4G	PF02854.19	2.4e-54	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOMET00000036640	UPF2-201	7178	-	ENSOMEP00000021532	1252 (aa)	-	-

Gene Model

Click here to download ENSOMEG00000023420's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOMEG00000023420's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOMEG00000023420	UPF2	98	79.046	ENSG00000151461	UPF2	99	78.159	Homo_sapiens
ENSOMEG00000023420	UPF2	98	84.458	ENSAPOG00000015837	UPF2	100	84.144	Acanthochromis_polyacanthus
ENSOMEG00000023420	UPF2	98	79.235	ENSAMEG00000004586	UPF2	100	78.972	Ailuropoda_melanoleuca
ENSOMEG00000023420	UPF2	98	89.734	ENSACIG00000018078	UPF2	100	89.734	Amphilophus_citrinellus
ENSOMEG00000023420	UPF2	99	89.831	ENSAOCG00000016766	UPF2	99	90.345	Amphiprion_ocellaris
ENSOMEG00000023420	UPF2	98	90.424	ENSAPEG00000019084	UPF2	99	90.424	Amphiprion_percula
ENSOMEG00000023420	UPF2	98	89.498	ENSATEG00000021677	UPF2	99	89.577	Anabas_testudineus
ENSOMEG00000023420	UPF2	98	75.741	ENSAPLG00000010287	UPF2	90	79.690	Anas_platyrhynchos
ENSOMEG00000023420	UPF2	98	79.203	ENSACAG00000009259	UPF2	100	78.972	Anolis_carolinensis
ENSOMEG00000023420	UPF2	89	75.321	ENSANAG00000028451	UPF2	93	74.532	Aotus_nancymaae
ENSOMEG00000023420	UPF2	98	89.498	ENSACLG00000012696	UPF2	99	89.577	Astatotilapia_calliptera
ENSOMEG00000023420	UPF2	98	85.000	ENSAMXG00000013700	UPF2	99	84.922	Astyanax_mexicanus
ENSOMEG00000023420	UPF2	98	79.281	ENSBTAG00000000288	UPF2	99	77.925	Bos_taurus
ENSOMEG00000023420	UPF2	98	78.421	ENSCJAG00000020685	UPF2	99	77.475	Callithrix_jacchus
ENSOMEG00000023420	UPF2	98	79.359	ENSCAFG00000004839	UPF2	100	78.972	Canis_familiaris
ENSOMEG00000023420	UPF2	98	77.326	ENSCAFG00020005882	UPF2	100	85.572	Canis_lupus_dingo
ENSOMEG00000023420	UPF2	98	79.281	ENSCHIG00000020359	UPF2	99	78.488	Capra_hircus
ENSOMEG00000023420	UPF2	98	78.968	ENSTSYG00000000935	UPF2	97	84.530	Carlito_syrichta
ENSOMEG00000023420	UPF2	89	70.513	ENSCAPG00000016658	UPF2	95	70.493	Cavia_aperea
ENSOMEG00000023420	UPF2	97	76.318	ENSCPOG00000008809	UPF2	100	76.941	Cavia_porcellus
ENSOMEG00000023420	UPF2	98	72.244	ENSCCAG00000035991	UPF2	99	71.941	Cebus_capucinus
ENSOMEG00000023420	UPF2	98	79.062	ENSCATG00000032679	UPF2	99	77.708	Cercocebus_atys
ENSOMEG00000023420	UPF2	98	78.091	ENSCLAG00000011434	UPF2	99	78.081	Chinchilla_lanigera
ENSOMEG00000023420	UPF2	98	79.062	ENSCSAG00000013372	UPF2	99	77.708	Chlorocebus_sabaeus
ENSOMEG00000023420	UPF2	76	89.000	ENSCHOG00000000422	UPF2	77	87.250	Choloepus_hoffmanni
ENSOMEG00000023420	UPF2	98	77.743	ENSCPBG00000027823	UPF2	100	78.689	Chrysemys_picta_bellii
ENSOMEG00000023420	UPF2	76	45.597	ENSCSAVG00000007772	-	99	44.115	Ciona_savignyi
ENSOMEG00000023420	UPF2	98	73.953	ENSCANG00000040396	UPF2	100	73.520	Colobus_angolensis_palliatus
ENSOMEG00000023420	UPF2	98	78.890	ENSCGRG00001019347	Upf2	99	77.457	Cricetulus_griseus_chok1gshd
ENSOMEG00000023420	UPF2	98	78.890	ENSCGRG00000017993	Upf2	99	77.457	Cricetulus_griseus_crigri
ENSOMEG00000023420	UPF2	97	81.020	ENSCSEG00000003520	UPF2	99	80.221	Cynoglossus_semilaevis
ENSOMEG00000023420	UPF2	97	88.142	ENSCVAG00000006167	UPF2	100	87.984	Cyprinodon_variegatus
ENSOMEG00000023420	UPF2	98	79.203	ENSDNOG00000018160	UPF2	99	77.847	Dasypus_novemcinctus
ENSOMEG00000023420	UPF2	98	78.890	ENSDORG00000002478	Upf2	99	77.535	Dipodomys_ordii
ENSOMEG00000023420	UPF2	87	34.265	FBgn0029992	Upf2	90	36.513	Drosophila_melanogaster
ENSOMEG00000023420	UPF2	74	93.431	ENSETEG00000011583	-	62	93.182	Echinops_telfairi
ENSOMEG00000023420	UPF2	65	72.848	ENSEBUG00000012448	-	93	68.263	Eptatretus_burgeri
ENSOMEG00000023420	UPF2	98	78.247	ENSEASG00005019274	UPF2	99	78.409	Equus_asinus_asinus
ENSOMEG00000023420	UPF2	98	78.247	ENSECAG00000017022	UPF2	99	77.769	Equus_caballus
ENSOMEG00000023420	UPF2	83	75.000	ENSEEUG00000007819	UPF2	74	75.281	Erinaceus_europaeus
ENSOMEG00000023420	UPF2	98	85.714	ENSELUG00000012014	UPF2	99	85.402	Esox_lucius
ENSOMEG00000023420	UPF2	98	84.530	ENSFCAG00000005785	UPF2	99	78.315	Felis_catus
ENSOMEG00000023420	UPF2	98	80.406	ENSFALG00000001889	UPF2	98	79.547	Ficedula_albicollis
ENSOMEG00000023420	UPF2	98	77.361	ENSFDAG00000014348	UPF2	99	77.301	Fukomys_damarensis
ENSOMEG00000023420	UPF2	99	87.723	ENSFHEG00000009826	UPF2	99	88.440	Fundulus_heteroclitus
ENSOMEG00000023420	UPF2	88	85.160	ENSGMOG00000005557	UPF2	100	83.255	Gadus_morhua
ENSOMEG00000023420	UPF2	98	80.688	ENSGALG00000033772	UPF2	99	79.875	Gallus_gallus
ENSOMEG00000023420	UPF2	99	87.606	ENSGAFG00000020867	UPF2	99	88.305	Gambusia_affinis
ENSOMEG00000023420	UPF2	98	87.568	ENSGACG00000001080	UPF2	100	87.490	Gasterosteus_aculeatus
ENSOMEG00000023420	UPF2	98	79.186	ENSGAGG00000002700	UPF2	99	78.108	Gopherus_agassizii
ENSOMEG00000023420	UPF2	98	79.046	ENSGGOG00000001479	UPF2	99	78.159	Gorilla_gorilla
ENSOMEG00000023420	UPF2	99	88.657	ENSHBUG00000004249	UPF2	100	89.498	Haplochromis_burtoni
ENSOMEG00000023420	UPF2	98	70.532	ENSHGLG00000003822	-	99	70.024	Heterocephalus_glaber_female
ENSOMEG00000023420	UPF2	98	77.856	ENSHGLG00000015176	-	99	76.971	Heterocephalus_glaber_female
ENSOMEG00000023420	UPF2	98	75.509	ENSHGLG00100010036	UPF2	100	74.453	Heterocephalus_glaber_male
ENSOMEG00000023420	UPF2	98	86.630	ENSHCOG00000004025	UPF2	99	86.630	Hippocampus_comes
ENSOMEG00000023420	UPF2	98	84.231	ENSIPUG00000015524	UPF2	100	84.034	Ictalurus_punctatus
ENSOMEG00000023420	UPF2	98	78.890	ENSSTOG00000013075	UPF2	99	77.535	Ictidomys_tridecemlineatus
ENSOMEG00000023420	UPF2	98	75.488	ENSJJAG00000004913	Upf2	99	77.067	Jaculus_jaculus
ENSOMEG00000023420	UPF2	97	88.705	ENSKMAG00000001071	UPF2	99	88.389	Kryptolebias_marmoratus
ENSOMEG00000023420	UPF2	98	88.871	ENSLBEG00000016394	-	99	88.950	Labrus_bergylta
ENSOMEG00000023420	UPF2	77	85.309	ENSLBEG00000000728	-	94	85.225	Labrus_bergylta
ENSOMEG00000023420	UPF2	88	74.444	ENSLACG00000015945	UPF2	99	72.876	Latimeria_chalumnae
ENSOMEG00000023420	UPF2	97	83.649	ENSLOCG00000015698	UPF2	99	83.649	Lepisosteus_oculatus
ENSOMEG00000023420	UPF2	98	79.062	ENSMFAG00000043865	UPF2	99	77.708	Macaca_fascicularis
ENSOMEG00000023420	UPF2	98	79.062	ENSMMUG00000008241	UPF2	99	77.708	Macaca_mulatta
ENSOMEG00000023420	UPF2	77	78.634	ENSMNEG00000008062	UPF2	99	77.659	Macaca_nemestrina
ENSOMEG00000023420	UPF2	98	77.049	ENSMLEG00000036120	UPF2	100	76.228	Mandrillus_leucophaeus
ENSOMEG00000023420	UPF2	98	89.028	ENSMAMG00000018276	UPF2	99	89.263	Mastacembelus_armatus
ENSOMEG00000023420	UPF2	98	89.498	ENSMZEG00005021595	UPF2	99	89.577	Maylandia_zebra
ENSOMEG00000023420	UPF2	98	80.126	ENSMGAG00000004573	UPF2	99	79.937	Meleagris_gallopavo
ENSOMEG00000023420	UPF2	98	76.779	ENSMAUG00000016512	Upf2	99	75.351	Mesocricetus_auratus
ENSOMEG00000023420	UPF2	98	76.544	ENSMICG00000001716	UPF2	100	75.975	Microcebus_murinus
ENSOMEG00000023420	UPF2	98	77.621	ENSMOCG00000008263	Upf2	99	77.301	Microtus_ochrogaster
ENSOMEG00000023420	UPF2	98	85.714	ENSMMOG00000006528	UPF2	100	85.243	Mola_mola
ENSOMEG00000023420	UPF2	98	77.013	ENSMODG00000016794	UPF2	99	78.393	Monodelphis_domestica
ENSOMEG00000023420	UPF2	98	87.912	ENSMALG00000002663	UPF2	100	87.834	Monopterus_albus
ENSOMEG00000023420	UPF2	98	78.890	MGP_CAROLIEiJ_G0023157	Upf2	99	80.000	Mus_caroli
ENSOMEG00000023420	UPF2	98	79.203	ENSMUSG00000043241	Upf2	99	77.769	Mus_musculus
ENSOMEG00000023420	UPF2	98	79.046	MGP_PahariEiJ_G0019217	Upf2	99	78.081	Mus_pahari
ENSOMEG00000023420	UPF2	98	79.437	MGP_SPRETEiJ_G0024075	Upf2	99	78.003	Mus_spretus
ENSOMEG00000023420	UPF2	98	79.124	ENSMPUG00000001064	UPF2	99	78.237	Mustela_putorius_furo
ENSOMEG00000023420	UPF2	98	78.767	ENSMLUG00000000228	UPF2	100	79.082	Myotis_lucifugus
ENSOMEG00000023420	UPF2	98	89.498	ENSNBRG00000013629	UPF2	99	89.577	Neolamprologus_brichardi
ENSOMEG00000023420	UPF2	98	78.984	ENSNLEG00000012058	UPF2	99	77.631	Nomascus_leucogenys
ENSOMEG00000023420	UPF2	74	93.662	ENSOPRG00000006801	-	73	93.662	Ochotona_princeps
ENSOMEG00000023420	UPF2	98	77.908	ENSODEG00000001290	UPF2	99	77.925	Octodon_degus
ENSOMEG00000023420	UPF2	98	89.185	ENSONIG00000017991	UPF2	100	89.132	Oreochromis_niloticus
ENSOMEG00000023420	UPF2	98	76.713	ENSOCUG00000006230	UPF2	100	77.580	Oryctolagus_cuniculus
ENSOMEG00000023420	UPF2	98	93.401	ENSORLG00000017189	UPF2	99	93.401	Oryzias_latipes
ENSOMEG00000023420	UPF2	98	93.559	ENSORLG00020005969	UPF2	99	93.559	Oryzias_latipes_hni
ENSOMEG00000023420	UPF2	98	93.559	ENSORLG00015005713	UPF2	99	93.559	Oryzias_latipes_hsok
ENSOMEG00000023420	UPF2	98	79.515	ENSOGAG00000005796	UPF2	99	78.315	Otolemur_garnettii
ENSOMEG00000023420	UPF2	98	79.157	ENSOARG00000014587	UPF2	99	77.804	Ovis_aries
ENSOMEG00000023420	UPF2	98	76.719	ENSPPAG00000037953	UPF2	100	76.586	Pan_paniscus
ENSOMEG00000023420	UPF2	98	79.203	ENSPPRG00000000690	UPF2	99	78.315	Panthera_pardus
ENSOMEG00000023420	UPF2	98	79.203	ENSPTIG00000008867	UPF2	99	78.315	Panthera_tigris_altaica
ENSOMEG00000023420	UPF2	98	79.046	ENSPTRG00000002291	UPF2	99	78.159	Pan_troglodytes
ENSOMEG00000023420	UPF2	98	78.984	ENSPANG00000023399	UPF2	99	77.631	Papio_anubis
ENSOMEG00000023420	UPF2	98	83.503	ENSPKIG00000025502	UPF2	99	83.503	Paramormyrops_kingsleyae
ENSOMEG00000023420	UPF2	60	81.902	ENSPSIG00000015158	UPF2	95	81.638	Pelodiscus_sinensis
ENSOMEG00000023420	UPF2	98	85.692	ENSPMGG00000005259	UPF2	100	86.399	Periophthalmus_magnuspinnatus
ENSOMEG00000023420	UPF2	90	76.232	ENSPEMG00000015731	Upf2	99	76.232	Peromyscus_maniculatus_bairdii
ENSOMEG00000023420	UPF2	98	79.173	ENSPCIG00000006656	UPF2	100	78.939	Phascolarctos_cinereus
ENSOMEG00000023420	UPF2	98	88.540	ENSPFOG00000017118	UPF2	99	88.697	Poecilia_formosa
ENSOMEG00000023420	UPF2	99	88.068	ENSPLAG00000005094	UPF2	99	88.776	Poecilia_latipinna
ENSOMEG00000023420	UPF2	99	87.991	ENSPMEG00000017009	UPF2	99	88.697	Poecilia_mexicana
ENSOMEG00000023420	UPF2	98	87.363	ENSPREG00000021880	UPF2	100	87.284	Poecilia_reticulata
ENSOMEG00000023420	UPF2	63	79.335	ENSPPYG00000002089	-	100	78.276	Pongo_abelii
ENSOMEG00000023420	UPF2	93	71.107	ENSPCAG00000000684	UPF2	85	70.765	Procavia_capensis
ENSOMEG00000023420	UPF2	98	76.153	ENSPCOG00000021656	UPF2	100	76.365	Propithecus_coquereli
ENSOMEG00000023420	UPF2	98	72.578	ENSPVAG00000017286	UPF2	99	71.863	Pteropus_vampyrus
ENSOMEG00000023420	UPF2	98	86.912	ENSPNYG00000017096	UPF2	100	86.912	Pundamilia_nyererei
ENSOMEG00000023420	UPF2	98	85.614	ENSPNAG00000009357	UPF2	99	85.703	Pygocentrus_nattereri
ENSOMEG00000023420	UPF2	98	75.156	ENSRNOG00000023593	Upf2	100	90.000	Rattus_norvegicus
ENSOMEG00000023420	UPF2	98	77.873	ENSRBIG00000037780	UPF2	100	77.223	Rhinopithecus_bieti
ENSOMEG00000023420	UPF2	98	78.828	ENSRROG00000043547	UPF2	99	77.397	Rhinopithecus_roxellana
ENSOMEG00000023420	UPF2	98	78.186	ENSSBOG00000020012	UPF2	99	77.163	Saimiri_boliviensis_boliviensis
ENSOMEG00000023420	UPF2	98	82.616	ENSSFOG00015023788	upf2	100	81.790	Scleropages_formosus
ENSOMEG00000023420	UPF2	88	87.326	ENSSMAG00000007637	UPF2	100	86.392	Scophthalmus_maximus
ENSOMEG00000023420	UPF2	99	89.535	ENSSDUG00000017244	UPF2	99	90.345	Seriola_dumerili
ENSOMEG00000023420	UPF2	98	87.127	ENSSLDG00000016866	UPF2	100	86.735	Seriola_lalandi_dorsalis
ENSOMEG00000023420	UPF2	98	75.997	ENSSARG00000008615	UPF2	99	78.003	Sorex_araneus
ENSOMEG00000023420	UPF2	98	77.205	ENSSPUG00000014544	UPF2	99	77.127	Sphenodon_punctatus
ENSOMEG00000023420	UPF2	66	79.247	ENSSSCG00000011117	-	99	78.563	Sus_scrofa
ENSOMEG00000023420	UPF2	98	80.345	ENSTGUG00000002163	-	100	80.156	Taeniopygia_guttata
ENSOMEG00000023420	UPF2	98	86.892	ENSTRUG00000007519	UPF2	99	86.892	Takifugu_rubripes
ENSOMEG00000023420	UPF2	98	84.326	ENSTNIG00000004453	UPF2	99	84.013	Tetraodon_nigroviridis
ENSOMEG00000023420	UPF2	91	73.048	ENSTBEG00000012679	UPF2	93	73.367	Tupaia_belangeri
ENSOMEG00000023420	UPF2	98	77.856	ENSTTRG00000016388	UPF2	99	77.613	Tursiops_truncatus
ENSOMEG00000023420	UPF2	85	92.135	ENSUAMG00000023560	UPF2	98	92.135	Ursus_americanus
ENSOMEG00000023420	UPF2	98	79.281	ENSUMAG00000012953	UPF2	95	78.393	Ursus_maritimus
ENSOMEG00000023420	UPF2	80	90.323	ENSVPAG00000006763	UPF2	85	90.323	Vicugna_pacos
ENSOMEG00000023420	UPF2	98	79.359	ENSVVUG00000006166	UPF2	100	77.593	Vulpes_vulpes
ENSOMEG00000023420	UPF2	98	76.269	ENSXETG00000033103	UPF2	91	80.086	Xenopus_tropicalis
ENSOMEG00000023420	UPF2	98	88.226	ENSXCOG00000011604	UPF2	100	88.305	Xiphophorus_couchianus
ENSOMEG00000023420	UPF2	99	87.837	ENSXMAG00000017209	UPF2	99	88.540	Xiphophorus_maculatus