EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: ENSOMEG00000023716 (Gene tree)
Gene ID: 112145113
Gene Symbol: opn1sw2 (1 of many)
Alias: -
Full Name: blue-sensitive opsin-like
Gene Type: protein_coding
Species: Oryzias_melastigma
Status: putative
Strand: Plus strand
Length: 26145 bases
Position: chrNVQA01000009.1:29621786-29647930
Accession: 112145113
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOMEP00000036132	MMR_HSR1	PF01926.23	8.3e-06	1	1
ENSOMEP00000036141	MMR_HSR1	PF01926.23	3.7e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOMET00000031520	-	749	-	ENSOMEP00000036132	204 (aa)	-	-
ENSOMET00000036765	-	1879	-	ENSOMEP00000036141	491 (aa)	XP_024125927	UPI000CF7EF36
ENSOMET00000031523	-	1660	-	ENSOMEP00000036136	418 (aa)	-	-

Gene Model

Click here to download ENSOMEG00000023716's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOMEG00000023716's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSOMEG00000023716	opn1sw2	77	34.591	ENSOMEG00000017467	rab11a	72	34.810
ENSOMEG00000023716	opn1sw2	92	48.705	ENSOMEG00000009701	RAB9A	97	48.705
ENSOMEG00000023716	opn1sw2	82	31.176	ENSOMEG00000011584	pth2r	70	31.176
ENSOMEG00000023716	opn1sw2	79	39.506	ENSOMEG00000017258	RAB41	75	39.506
ENSOMEG00000023716	opn1sw2	59	30.579	ENSOMEG00000001959	arl8ba	61	30.579
ENSOMEG00000023716	opn1sw2	77	37.107	ENSOMEG00000006333	RAB39B	73	37.107
ENSOMEG00000023716	opn1sw2	83	35.673	ENSOMEG00000015474	si:dkey-16l2.16	96	32.843
ENSOMEG00000023716	opn1sw2	81	33.133	ENSOMEG00000020271	rab11al	75	33.133
ENSOMEG00000023716	opn1sw2	85	36.416	ENSOMEG00000020605	rab18a	89	35.870
ENSOMEG00000023716	opn1sw2	77	40.625	ENSOMEG00000020418	rab42a	72	40.881
ENSOMEG00000023716	opn1sw2	96	50.251	ENSOMEG00000017263	-	96	50.251
ENSOMEG00000023716	opn1sw2	83	33.918	ENSOMEG00000022002	rab15	78	33.918
ENSOMEG00000023716	opn1sw2	93	35.263	ENSOMEG00000008210	rab13	93	35.263
ENSOMEG00000023716	opn1sw2	77	38.608	ENSOMEG00000020594	zgc:171927	72	38.608
ENSOMEG00000023716	opn1sw2	88	34.254	ENSOMEG00000010692	rab5aa	82	34.254
ENSOMEG00000023716	opn1sw2	79	38.889	ENSOMEG00000009074	-	78	38.889
ENSOMEG00000023716	opn1sw2	96	31.579	ENSOMEG00000003623	rab14	95	31.579
ENSOMEG00000023716	opn1sw2	76	39.490	ENSOMEG00000013128	zgc:101559	66	39.744
ENSOMEG00000023716	opn1sw2	91	35.484	ENSOMEG00000001706	rab23	77	35.484
ENSOMEG00000023716	opn1sw2	96	31.373	ENSOMEG00000019462	RAB15	96	31.373
ENSOMEG00000023716	opn1sw2	82	30.000	ENSOMEG00000019524	-	80	30.000
ENSOMEG00000023716	opn1sw2	71	31.034	ENSOMEG00000011273	kras	90	30.857
ENSOMEG00000023716	opn1sw2	80	33.735	ENSOMEG00000017890	dnajc27	61	33.735
ENSOMEG00000023716	opn1sw2	81	34.337	ENSOMEG00000020350	rab25b	78	34.337
ENSOMEG00000023716	opn1sw2	79	36.196	ENSOMEG00000023078	rab5c	78	35.260
ENSOMEG00000023716	opn1sw2	95	35.751	ENSOMEG00000007546	rab18b	92	35.751
ENSOMEG00000023716	opn1sw2	56	31.897	ENSOMEG00000011161	RAP2B	82	33.858
ENSOMEG00000023716	opn1sw2	79	37.654	ENSOMEG00000023625	rab6bb	78	37.419
ENSOMEG00000023716	opn1sw2	79	38.272	ENSOMEG00000006036	rab1ab	78	38.272
ENSOMEG00000023716	opn1sw2	59	31.405	ENSOMEG00000023857	arl8bb	65	31.405
ENSOMEG00000023716	opn1sw2	82	55.952	ENSOMEG00000010156	-	82	55.621
ENSOMEG00000023716	opn1sw2	79	36.585	ENSOMEG00000000336	RAB29	81	36.585
ENSOMEG00000023716	opn1sw2	77	38.889	ENSOMEG00000017958	si:dkey-34d22.5	72	38.889
ENSOMEG00000023716	opn1sw2	73	38.667	ENSOMEG00000019819	rab33ba	62	38.667
ENSOMEG00000023716	opn1sw2	85	33.143	ENSOMEG00000009290	-	80	33.143
ENSOMEG00000023716	opn1sw2	86	33.520	ENSOMEG00000010334	rab34b	72	33.520
ENSOMEG00000023716	opn1sw2	96	48.485	ENSOMEG00000008327	rab9b	90	48.485
ENSOMEG00000023716	opn1sw2	95	34.389	ENSOMEG00000021726	-	90	34.389
ENSOMEG00000023716	opn1sw2	81	37.209	ENSOMEG00000018494	-	69	37.209
ENSOMEG00000023716	opn1sw2	96	34.171	ENSOMEG00000014206	rab6ba	94	34.171
ENSOMEG00000023716	opn1sw2	77	33.962	ENSOMEG00000002581	rab11ba	71	34.177
ENSOMEG00000023716	opn1sw2	79	38.889	ENSOMEG00000004379	-	76	38.889
ENSOMEG00000023716	opn1sw2	96	33.333	ENSOMEG00000017306	rab33a	73	33.333
ENSOMEG00000023716	opn1sw2	96	32.701	ENSOMEG00000017881	-	96	32.701
ENSOMEG00000023716	opn1sw2	79	35.583	ENSOMEG00000016752	rab2a	75	35.802
ENSOMEG00000023716	opn1sw2	77	33.333	ENSOMEG00000017806	-	71	33.544
ENSOMEG00000023716	opn1sw2	77	37.107	ENSOMEG00000008191	rab12	64	37.107
ENSOMEG00000023716	opn1sw2	71	32.192	ENSOMEG00000000343	rras	78	33.121
ENSOMEG00000023716	opn1sw2	81	33.133	ENSOMEG00000010510	rab25a	77	33.133
ENSOMEG00000023716	opn1sw2	97	45.000	ENSOMEG00000000162	rab9a	97	45.000
ENSOMEG00000023716	opn1sw2	71	31.034	ENSOMEG00000016685	zgc:55558	83	32.075
ENSOMEG00000023716	opn1sw2	77	33.962	ENSOMEG00000002562	-	71	34.177
ENSOMEG00000023716	opn1sw2	91	38.172	ENSOMEG00000001613	rab30	90	38.172
ENSOMEG00000023716	opn1sw2	84	30.460	ENSOMEG00000018719	hrasb	97	31.383
ENSOMEG00000023716	opn1sw2	88	33.880	ENSOMEG00000003647	rab34a	60	33.880