EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSONIG00000001954 (Gene tree)
Gene ID: 100698641
Gene Symbol: smfn
Alias: -
Full Name: small fragment nuclease
Gene Type: protein_coding
Species: Oreochromis_niloticus
Status: putative
Strand: Plus strand
Length: 11040 bases
Position: chrGL831515.1:2169-13208
Accession: ZDB-GENE-040426-1709
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSONIP00000002446	RNase_T	PF00929.24	2.5e-33	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSONIT00000002447	-	696	-	ENSONIP00000002446	231 (aa)	-	I3J0Q6

Gene Model

Click here to download ENSONIG00000001954's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSONIG00000001954's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSONIG00000001954	smfn	80	81.720	ENSG00000076043	REXO2	96	81.215	Homo_sapiens
ENSONIG00000001954	smfn	92	74.554	ENSAMEG00000013263	REXO2	95	74.554	Ailuropoda_melanoleuca
ENSONIG00000001954	smfn	80	90.811	ENSACIG00000023553	smfn	100	90.811	Amphilophus_citrinellus
ENSONIG00000001954	smfn	56	90.152	ENSAOCG00000011565	smfn	80	90.152	Amphiprion_ocellaris
ENSONIG00000001954	smfn	90	87.678	ENSAPEG00000012435	smfn	78	87.678	Amphiprion_percula
ENSONIG00000001954	smfn	94	81.696	ENSATEG00000015385	smfn	80	81.696	Anabas_testudineus
ENSONIG00000001954	smfn	82	77.604	ENSAPLG00000005045	REXO2	94	77.604	Anas_platyrhynchos
ENSONIG00000001954	smfn	85	69.500	ENSACAG00000011631	REXO2	94	69.500	Anolis_carolinensis
ENSONIG00000001954	smfn	92	73.568	ENSANAG00000020834	REXO2	95	73.568	Aotus_nancymaae
ENSONIG00000001954	smfn	50	64.655	ENSANAG00000027457	-	93	60.741	Aotus_nancymaae
ENSONIG00000001954	smfn	100	97.835	ENSACLG00000024566	smfn	95	98.324	Astatotilapia_calliptera
ENSONIG00000001954	smfn	92	73.568	ENSBTAG00000005843	REXO2	95	73.568	Bos_taurus
ENSONIG00000001954	smfn	80	47.283	WBGene00007429	C08B6.8	92	55.556	Caenorhabditis_elegans
ENSONIG00000001954	smfn	92	72.687	ENSCJAG00000012434	REXO2	95	72.687	Callithrix_jacchus
ENSONIG00000001954	smfn	92	72.321	ENSCAFG00000013511	REXO2	94	72.321	Canis_familiaris
ENSONIG00000001954	smfn	92	73.214	ENSCAFG00020002513	REXO2	95	73.214	Canis_lupus_dingo
ENSONIG00000001954	smfn	92	73.568	ENSCHIG00000009264	REXO2	95	73.568	Capra_hircus
ENSONIG00000001954	smfn	81	70.213	ENSTSYG00000027948	-	96	70.213	Carlito_syrichta
ENSONIG00000001954	smfn	92	73.128	ENSTSYG00000002237	REXO2	95	73.128	Carlito_syrichta
ENSONIG00000001954	smfn	77	81.768	ENSCAPG00000006093	REXO2	96	81.768	Cavia_aperea
ENSONIG00000001954	smfn	92	75.000	ENSCPOG00000010548	REXO2	95	75.000	Cavia_porcellus
ENSONIG00000001954	smfn	92	73.568	ENSCCAG00000034979	REXO2	95	73.568	Cebus_capucinus
ENSONIG00000001954	smfn	86	76.077	ENSCATG00000015278	REXO2	95	74.554	Cercocebus_atys
ENSONIG00000001954	smfn	92	75.336	ENSCLAG00000011195	REXO2	94	75.336	Chinchilla_lanigera
ENSONIG00000001954	smfn	86	76.077	ENSCSAG00000002754	REXO2	95	74.554	Chlorocebus_sabaeus
ENSONIG00000001954	smfn	92	73.214	ENSCHOG00000000642	-	95	73.214	Choloepus_hoffmanni
ENSONIG00000001954	smfn	60	72.143	ENSCPBG00000009359	REXO2	97	72.143	Chrysemys_picta_bellii
ENSONIG00000001954	smfn	79	60.656	ENSCING00000009858	-	88	60.656	Ciona_intestinalis
ENSONIG00000001954	smfn	86	76.077	ENSCANG00000034756	REXO2	95	74.554	Colobus_angolensis_palliatus
ENSONIG00000001954	smfn	84	79.082	ENSCGRG00001013673	-	96	79.082	Cricetulus_griseus_chok1gshd
ENSONIG00000001954	smfn	84	77.551	ENSCGRG00001010922	-	96	77.551	Cricetulus_griseus_chok1gshd
ENSONIG00000001954	smfn	98	72.174	ENSCGRG00001019814	-	97	72.174	Cricetulus_griseus_chok1gshd
ENSONIG00000001954	smfn	98	72.174	ENSCGRG00000006235	Rexo2	97	72.174	Cricetulus_griseus_crigri
ENSONIG00000001954	smfn	94	73.913	ENSCSEG00000007214	smfn	73	83.251	Cynoglossus_semilaevis
ENSONIG00000001954	smfn	51	52.542	ENSCVAG00000012022	-	96	52.542	Cyprinodon_variegatus
ENSONIG00000001954	smfn	77	86.111	ENSCVAG00000012008	smfn	97	86.111	Cyprinodon_variegatus
ENSONIG00000001954	smfn	91	75.587	ENSDARG00000009806	smfn	82	75.587	Danio_rerio
ENSONIG00000001954	smfn	80	78.534	ENSDNOG00000046533	REXO2	91	78.534	Dasypus_novemcinctus
ENSONIG00000001954	smfn	88	77.358	ENSDORG00000011255	Rexo2	89	77.358	Dipodomys_ordii
ENSONIG00000001954	smfn	88	58.621	ENSDORG00000025142	-	92	59.524	Dipodomys_ordii
ENSONIG00000001954	smfn	79	52.747	FBgn0039115	CG10214	86	52.747	Drosophila_melanogaster
ENSONIG00000001954	smfn	85	70.707	ENSEBUG00000013964	REXO2	68	70.707	Eptatretus_burgeri
ENSONIG00000001954	smfn	85	79.602	ENSEASG00005006674	REXO2	85	79.602	Equus_asinus_asinus
ENSONIG00000001954	smfn	85	79.602	ENSECAG00000005988	REXO2	85	79.602	Equus_caballus
ENSONIG00000001954	smfn	85	79.899	ENSELUG00000020072	smfn	69	79.899	Esox_lucius
ENSONIG00000001954	smfn	92	73.128	ENSFCAG00000018632	REXO2	95	73.128	Felis_catus
ENSONIG00000001954	smfn	79	79.891	ENSFALG00000010044	REXO2	91	79.891	Ficedula_albicollis
ENSONIG00000001954	smfn	92	73.568	ENSFDAG00000011764	REXO2	95	73.568	Fukomys_damarensis
ENSONIG00000001954	smfn	82	80.208	ENSGMOG00000006370	smfn	99	80.208	Gadus_morhua
ENSONIG00000001954	smfn	82	81.771	ENSGALG00000035980	REXO2	84	81.538	Gallus_gallus
ENSONIG00000001954	smfn	92	80.930	ENSGAFG00000015349	smfn	77	80.930	Gambusia_affinis
ENSONIG00000001954	smfn	84	84.536	ENSGACG00000020096	smfn	96	84.536	Gasterosteus_aculeatus
ENSONIG00000001954	smfn	94	71.364	ENSGAGG00000021126	REXO2	96	71.364	Gopherus_agassizii
ENSONIG00000001954	smfn	86	74.528	ENSGGOG00000023267	REXO2	95	73.128	Gorilla_gorilla
ENSONIG00000001954	smfn	100	74.892	ENSHBUG00000020097	REXO2	91	74.892	Haplochromis_burtoni
ENSONIG00000001954	smfn	92	74.554	ENSHGLG00000013556	REXO2	95	74.554	Heterocephalus_glaber_female
ENSONIG00000001954	smfn	92	75.000	ENSHGLG00100005257	REXO2	95	75.000	Heterocephalus_glaber_male
ENSONIG00000001954	smfn	77	84.270	ENSHCOG00000007122	smfn	98	84.270	Hippocampus_comes
ENSONIG00000001954	smfn	84	83.756	ENSIPUG00000020440	rexo2	76	81.951	Ictalurus_punctatus
ENSONIG00000001954	smfn	92	75.000	ENSSTOG00000012465	REXO2	95	75.000	Ictidomys_tridecemlineatus
ENSONIG00000001954	smfn	88	56.604	ENSJJAG00000022605	-	87	56.604	Jaculus_jaculus
ENSONIG00000001954	smfn	92	73.568	ENSJJAG00000013710	-	95	73.568	Jaculus_jaculus
ENSONIG00000001954	smfn	84	87.113	ENSKMAG00000016795	smfn	73	85.294	Kryptolebias_marmoratus
ENSONIG00000001954	smfn	79	84.783	ENSLBEG00000006021	smfn	97	84.783	Labrus_bergylta
ENSONIG00000001954	smfn	94	65.315	ENSLACG00000018623	REXO2	91	65.315	Latimeria_chalumnae
ENSONIG00000001954	smfn	85	80.808	ENSLOCG00000002389	smfn	94	80.808	Lepisosteus_oculatus
ENSONIG00000001954	smfn	82	81.771	ENSLAFG00000012451	REXO2	85	79.602	Loxodonta_africana
ENSONIG00000001954	smfn	86	76.077	ENSMFAG00000041155	REXO2	95	74.554	Macaca_fascicularis
ENSONIG00000001954	smfn	86	76.077	ENSMMUG00000012269	REXO2	95	74.554	Macaca_mulatta
ENSONIG00000001954	smfn	86	76.077	ENSMNEG00000033379	REXO2	95	74.554	Macaca_nemestrina
ENSONIG00000001954	smfn	86	76.077	ENSMLEG00000036571	REXO2	95	74.554	Mandrillus_leucophaeus
ENSONIG00000001954	smfn	90	90.385	ENSMAMG00000021209	smfn	75	90.385	Mastacembelus_armatus
ENSONIG00000001954	smfn	100	97.835	ENSMZEG00005023224	-	89	97.835	Maylandia_zebra
ENSONIG00000001954	smfn	100	97.835	ENSMZEG00005020730	REXO2	89	97.835	Maylandia_zebra
ENSONIG00000001954	smfn	68	76.398	ENSMGAG00000003026	REXO2	99	76.398	Meleagris_gallopavo
ENSONIG00000001954	smfn	98	72.174	ENSMAUG00000014576	Rexo2	97	72.174	Mesocricetus_auratus
ENSONIG00000001954	smfn	88	74.771	ENSMICG00000010094	REXO2	92	74.771	Microcebus_murinus
ENSONIG00000001954	smfn	98	72.174	ENSMOCG00000009016	Rexo2	97	72.174	Microtus_ochrogaster
ENSONIG00000001954	smfn	88	82.039	ENSMMOG00000006430	smfn	77	82.039	Mola_mola
ENSONIG00000001954	smfn	90	76.852	ENSMODG00000013913	REXO2	92	76.852	Monodelphis_domestica
ENSONIG00000001954	smfn	97	76.471	ENSMALG00000018130	smfn	68	76.471	Monopterus_albus
ENSONIG00000001954	smfn	90	76.190	MGP_CAROLIEiJ_G0032166	Rexo2	89	76.190	Mus_caroli
ENSONIG00000001954	smfn	89	76.442	ENSMUSG00000032026	Rexo2	88	76.442	Mus_musculus
ENSONIG00000001954	smfn	89	76.442	MGP_PahariEiJ_G0015034	Rexo2	88	76.442	Mus_pahari
ENSONIG00000001954	smfn	89	76.442	MGP_SPRETEiJ_G0033305	Rexo2	88	76.442	Mus_spretus
ENSONIG00000001954	smfn	92	74.554	ENSMPUG00000003947	REXO2	95	74.554	Mustela_putorius_furo
ENSONIG00000001954	smfn	88	73.853	ENSMLUG00000009030	REXO2	92	73.853	Myotis_lucifugus
ENSONIG00000001954	smfn	84	81.122	ENSNGAG00000008819	Rexo2	96	81.122	Nannospalax_galili
ENSONIG00000001954	smfn	80	94.565	ENSNBRG00000006529	smfn	98	94.565	Neolamprologus_brichardi
ENSONIG00000001954	smfn	86	74.528	ENSNLEG00000029745	REXO2	95	73.128	Nomascus_leucogenys
ENSONIG00000001954	smfn	85	80.100	ENSMEUG00000011558	REXO2	92	80.100	Notamacropus_eugenii
ENSONIG00000001954	smfn	54	76.378	ENSOPRG00000011076	REXO2	92	52.074	Ochotona_princeps
ENSONIG00000001954	smfn	77	64.972	ENSODEG00000016046	-	88	64.972	Octodon_degus
ENSONIG00000001954	smfn	77	81.768	ENSODEG00000009750	-	96	81.768	Octodon_degus
ENSONIG00000001954	smfn	82	80.729	ENSOANG00000001754	REXO2	87	75.845	Ornithorhynchus_anatinus
ENSONIG00000001954	smfn	85	80.100	ENSOCUG00000004274	REXO2	90	75.000	Oryctolagus_cuniculus
ENSONIG00000001954	smfn	84	83.249	ENSORLG00000005119	smfn	64	83.249	Oryzias_latipes
ENSONIG00000001954	smfn	84	83.756	ENSORLG00020010121	smfn	64	83.756	Oryzias_latipes_hni
ENSONIG00000001954	smfn	86	83.000	ENSORLG00015015699	smfn	65	83.000	Oryzias_latipes_hsok
ENSONIG00000001954	smfn	59	79.710	ENSOMEG00000008940	-	97	79.710	Oryzias_melastigma
ENSONIG00000001954	smfn	87	80.296	ENSOMEG00000016878	REXO2	75	80.296	Oryzias_melastigma
ENSONIG00000001954	smfn	92	73.568	ENSOGAG00000016860	REXO2	95	73.568	Otolemur_garnettii
ENSONIG00000001954	smfn	83	81.347	ENSOARG00000001040	REXO2	93	79.397	Ovis_aries
ENSONIG00000001954	smfn	80	81.720	ENSPPAG00000039849	REXO2	85	79.602	Pan_paniscus
ENSONIG00000001954	smfn	92	73.128	ENSPPRG00000007255	REXO2	95	73.128	Panthera_pardus
ENSONIG00000001954	smfn	77	81.215	ENSPTIG00000015578	REXO2	96	81.215	Panthera_tigris_altaica
ENSONIG00000001954	smfn	80	81.720	ENSPTRG00000004306	REXO2	85	79.602	Pan_troglodytes
ENSONIG00000001954	smfn	86	76.077	ENSPANG00000010675	REXO2	95	74.554	Papio_anubis
ENSONIG00000001954	smfn	93	72.646	ENSPKIG00000000911	smfn	77	85.135	Paramormyrops_kingsleyae
ENSONIG00000001954	smfn	94	75.000	ENSPSIG00000005151	REXO2	80	75.000	Pelodiscus_sinensis
ENSONIG00000001954	smfn	78	84.153	ENSPMGG00000007442	smfn	97	84.153	Periophthalmus_magnuspinnatus
ENSONIG00000001954	smfn	98	58.696	ENSPEMG00000001421	Rexo2	97	58.696	Peromyscus_maniculatus_bairdii
ENSONIG00000001954	smfn	50	76.724	ENSPMAG00000001022	REXO2	100	76.724	Petromyzon_marinus
ENSONIG00000001954	smfn	90	76.852	ENSPCIG00000011227	REXO2	58	76.852	Phascolarctos_cinereus
ENSONIG00000001954	smfn	97	80.088	ENSPFOG00000017861	smfn	99	85.000	Poecilia_formosa
ENSONIG00000001954	smfn	88	77.340	ENSPLAG00000007327	REXO2	77	77.340	Poecilia_latipinna
ENSONIG00000001954	smfn	97	80.531	ENSPMEG00000017343	smfn	80	80.531	Poecilia_mexicana
ENSONIG00000001954	smfn	97	79.204	ENSPREG00000016438	smfn	80	79.204	Poecilia_reticulata
ENSONIG00000001954	smfn	86	74.528	ENSPPYG00000003895	REXO2	95	73.128	Pongo_abelii
ENSONIG00000001954	smfn	82	81.250	ENSPCAG00000005237	REXO2	85	79.104	Procavia_capensis
ENSONIG00000001954	smfn	71	82.530	ENSPCOG00000027639	REXO2	85	82.530	Propithecus_coquereli
ENSONIG00000001954	smfn	88	62.727	ENSPVAG00000005295	REXO2	92	62.727	Pteropus_vampyrus
ENSONIG00000001954	smfn	100	97.403	ENSPNYG00000018401	smfn	89	97.403	Pundamilia_nyererei
ENSONIG00000001954	smfn	83	81.443	ENSPNAG00000005290	smfn	85	74.348	Pygocentrus_nattereri
ENSONIG00000001954	smfn	89	76.442	ENSRNOG00000018939	Rexo2	88	76.442	Rattus_norvegicus
ENSONIG00000001954	smfn	86	76.077	ENSRBIG00000037809	REXO2	95	74.554	Rhinopithecus_bieti
ENSONIG00000001954	smfn	86	76.077	ENSRROG00000038928	REXO2	95	74.554	Rhinopithecus_roxellana
ENSONIG00000001954	smfn	81	41.837	YLR059C	REX2	75	42.574	Saccharomyces_cerevisiae
ENSONIG00000001954	smfn	92	73.568	ENSSBOG00000028651	REXO2	95	73.568	Saimiri_boliviensis_boliviensis
ENSONIG00000001954	smfn	90	76.389	ENSSHAG00000008008	REXO2	92	76.389	Sarcophilus_harrisii
ENSONIG00000001954	smfn	77	82.320	ENSSFOG00015022414	smfn	96	82.320	Scleropages_formosus
ENSONIG00000001954	smfn	87	84.729	ENSSMAG00000003168	smfn	74	84.729	Scophthalmus_maximus
ENSONIG00000001954	smfn	94	81.818	ENSSDUG00000015624	smfn	81	81.818	Seriola_dumerili
ENSONIG00000001954	smfn	93	81.223	ENSSLDG00000014005	smfn	81	81.223	Seriola_lalandi_dorsalis
ENSONIG00000001954	smfn	55	87.402	ENSSARG00000014530	REXO2	100	87.402	Sorex_araneus
ENSONIG00000001954	smfn	68	71.519	ENSSPUG00000006005	REXO2	85	71.519	Sphenodon_punctatus
ENSONIG00000001954	smfn	79	91.304	ENSSPAG00000001530	smfn	99	91.304	Stegastes_partitus
ENSONIG00000001954	smfn	85	79.602	ENSSSCG00000015056	REXO2	85	79.602	Sus_scrofa
ENSONIG00000001954	smfn	83	79.897	ENSTGUG00000000121	REXO2	97	71.552	Taeniopygia_guttata
ENSONIG00000001954	smfn	87	83.663	ENSTRUG00000021529	smfn	85	76.856	Takifugu_rubripes
ENSONIG00000001954	smfn	89	81.019	ENSTNIG00000008588	smfn	93	81.944	Tetraodon_nigroviridis
ENSONIG00000001954	smfn	92	75.000	ENSTBEG00000017040	REXO2	95	75.000	Tupaia_belangeri
ENSONIG00000001954	smfn	88	74.312	ENSTTRG00000014928	REXO2	92	74.312	Tursiops_truncatus
ENSONIG00000001954	smfn	92	69.196	ENSUAMG00000019096	REXO2	97	75.661	Ursus_americanus
ENSONIG00000001954	smfn	92	74.554	ENSUMAG00000003770	REXO2	95	74.554	Ursus_maritimus
ENSONIG00000001954	smfn	72	63.855	ENSVPAG00000006301	REXO2	96	62.431	Vicugna_pacos
ENSONIG00000001954	smfn	92	73.214	ENSVVUG00000025223	REXO2	95	73.214	Vulpes_vulpes
ENSONIG00000001954	smfn	89	77.251	ENSXETG00000012648	rexo2	95	72.414	Xenopus_tropicalis
ENSONIG00000001954	smfn	82	81.675	ENSXCOG00000018838	smfn	95	83.333	Xiphophorus_couchianus
ENSONIG00000001954	smfn	87	82.178	ENSXMAG00000021125	smfn	65	82.178	Xiphophorus_maculatus