EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSONIG00000002210 (Gene tree)
Gene ID: -
Gene Symbol: tnrc6c1
Alias: -
Full Name: trinucleotide repeat containing 6C1
Gene Type: protein_coding
Species: Oreochromis_niloticus
Status: putative
Strand: Minus strand
Length: 21612 bases
Position: chrGL831257.1:1316917-1338528
Accession: ZDB-GENE-030131-7440
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSONIP00000002755	Ago_hook	PF10427.9	2.7e-07	1	1
ENSONIP00000002754	Ago_hook	PF10427.9	7.1e-06	1	1
ENSONIP00000002756	RRM_1	PF00076.22	0.00011	1	1
ENSONIP00000002755	RRM_1	PF00076.22	0.00013	1	1
ENSONIP00000002754	RRM_1	PF00076.22	0.00013	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSONIT00000002755	-	5345	-	ENSONIP00000002754	1569 (aa)	-	I3J1L4
ENSONIT00000002756	-	4701	-	ENSONIP00000002755	1566 (aa)	-	I3J1L5
ENSONIT00000002757	-	4020	-	ENSONIP00000002756	1339 (aa)	-	I3J1L6

Gene Model

Click here to download ENSONIG00000002210's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSONIG00000002210's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSONIG00000002210	tnrc6c1	94	57.795	ENSONIG00000018123	tnrc6c2	98	57.905
ENSONIG00000002210	tnrc6c1	60	45.652	ENSONIG00000019679	-	53	35.122

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSONIG00000002210	tnrc6c1	100	50.938	ENSG00000078687	TNRC6C	94	51.185	Homo_sapiens
ENSONIG00000002210	tnrc6c1	100	86.900	ENSAPOG00000019749	tnrc6c1	94	87.274	Acanthochromis_polyacanthus
ENSONIG00000002210	tnrc6c1	96	52.120	ENSAMEG00000013756	TNRC6C	90	49.470	Ailuropoda_melanoleuca
ENSONIG00000002210	tnrc6c1	100	82.385	ENSACIG00000008075	tnrc6c1	93	83.364	Amphilophus_citrinellus
ENSONIG00000002210	tnrc6c1	100	87.344	ENSAOCG00000023968	tnrc6c1	94	87.656	Amphiprion_ocellaris
ENSONIG00000002210	tnrc6c1	100	87.282	ENSAPEG00000009020	tnrc6c1	94	87.594	Amphiprion_percula
ENSONIG00000002210	tnrc6c1	97	54.678	ENSAPLG00000005456	TNRC6C	85	49.646	Anas_platyrhynchos
ENSONIG00000002210	tnrc6c1	97	51.235	ENSACAG00000016198	TNRC6C	83	49.881	Anolis_carolinensis
ENSONIG00000002210	tnrc6c1	96	51.729	ENSANAG00000021554	TNRC6C	94	51.251	Aotus_nancymaae
ENSONIG00000002210	tnrc6c1	100	85.792	ENSACLG00000000424	tnrc6c1	93	85.266	Astatotilapia_calliptera
ENSONIG00000002210	tnrc6c1	95	53.922	ENSBTAG00000018658	TNRC6C	94	51.335	Bos_taurus
ENSONIG00000002210	tnrc6c1	96	51.527	ENSCJAG00000019431	TNRC6C	94	50.548	Callithrix_jacchus
ENSONIG00000002210	tnrc6c1	96	53.851	ENSCAFG00000005224	TNRC6C	96	46.558	Canis_familiaris
ENSONIG00000002210	tnrc6c1	96	55.065	ENSCAFG00020006661	TNRC6C	100	49.714	Canis_lupus_dingo
ENSONIG00000002210	tnrc6c1	96	54.968	ENSCHIG00000026004	TNRC6C	89	52.417	Capra_hircus
ENSONIG00000002210	tnrc6c1	96	52.456	ENSTSYG00000005403	TNRC6C	100	49.526	Carlito_syrichta
ENSONIG00000002210	tnrc6c1	94	52.884	ENSCAPG00000007307	TNRC6C	89	47.007	Cavia_aperea
ENSONIG00000002210	tnrc6c1	94	57.197	ENSCPOG00000000467	TNRC6C	97	49.857	Cavia_porcellus
ENSONIG00000002210	tnrc6c1	96	52.413	ENSCCAG00000030524	TNRC6C	94	51.007	Cebus_capucinus
ENSONIG00000002210	tnrc6c1	96	52.257	ENSCATG00000033135	TNRC6C	94	51.399	Cercocebus_atys
ENSONIG00000002210	tnrc6c1	96	51.948	ENSCLAG00000011139	TNRC6C	83	51.307	Chinchilla_lanigera
ENSONIG00000002210	tnrc6c1	96	52.413	ENSCSAG00000005167	TNRC6C	84	50.178	Chlorocebus_sabaeus
ENSONIG00000002210	tnrc6c1	67	63.889	ENSCHOG00000000088	TNRC6C	66	63.482	Choloepus_hoffmanni
ENSONIG00000002210	tnrc6c1	96	55.767	ENSCPBG00000027960	TNRC6C	81	56.303	Chrysemys_picta_bellii
ENSONIG00000002210	tnrc6c1	96	52.326	ENSCANG00000041771	TNRC6C	94	51.430	Colobus_angolensis_palliatus
ENSONIG00000002210	tnrc6c1	96	53.702	ENSCGRG00001022686	Tnrc6c	94	49.635	Cricetulus_griseus_chok1gshd
ENSONIG00000002210	tnrc6c1	96	53.932	ENSCGRG00000018041	Tnrc6c	94	49.635	Cricetulus_griseus_crigri
ENSONIG00000002210	tnrc6c1	100	78.580	ENSCSEG00000012744	tnrc6c1	90	77.743	Cynoglossus_semilaevis
ENSONIG00000002210	tnrc6c1	99	61.984	ENSDARG00000076847	tnrc6c1	99	60.749	Danio_rerio
ENSONIG00000002210	tnrc6c1	96	53.506	ENSDNOG00000003247	TNRC6C	89	48.678	Dasypus_novemcinctus
ENSONIG00000002210	tnrc6c1	95	48.334	ENSDORG00000004558	Tnrc6c	93	50.863	Dipodomys_ordii
ENSONIG00000002210	tnrc6c1	84	56.213	ENSETEG00000005527	TNRC6C	77	55.348	Echinops_telfairi
ENSONIG00000002210	tnrc6c1	96	50.409	ENSEASG00005004799	TNRC6C	100	50.370	Equus_asinus_asinus
ENSONIG00000002210	tnrc6c1	96	51.499	ENSECAG00000012486	TNRC6C	90	50.370	Equus_caballus
ENSONIG00000002210	tnrc6c1	92	58.658	ENSEEUG00000010008	TNRC6C	83	57.674	Erinaceus_europaeus
ENSONIG00000002210	tnrc6c1	96	50.646	ENSFCAG00000028358	TNRC6C	100	50.057	Felis_catus
ENSONIG00000002210	tnrc6c1	94	53.936	ENSFALG00000000848	TNRC6C	94	49.299	Ficedula_albicollis
ENSONIG00000002210	tnrc6c1	96	51.907	ENSFDAG00000010368	TNRC6C	95	54.141	Fukomys_damarensis
ENSONIG00000002210	tnrc6c1	100	81.199	ENSFHEG00000002936	tnrc6c1	94	79.365	Fundulus_heteroclitus
ENSONIG00000002210	tnrc6c1	95	54.968	ENSGALG00000001725	TNRC6C	94	52.526	Gallus_gallus
ENSONIG00000002210	tnrc6c1	100	82.199	ENSGAFG00000019019	tnrc6c1	100	82.324	Gambusia_affinis
ENSONIG00000002210	tnrc6c1	100	75.169	ENSGACG00000012320	tnrc6c1	88	74.647	Gasterosteus_aculeatus
ENSONIG00000002210	tnrc6c1	96	54.175	ENSGAGG00000022043	TNRC6C	78	54.149	Gopherus_agassizii
ENSONIG00000002210	tnrc6c1	96	52.248	ENSGGOG00000011304	TNRC6C	94	51.185	Gorilla_gorilla
ENSONIG00000002210	tnrc6c1	100	98.281	ENSHBUG00000010846	tnrc6c1	100	98.281	Haplochromis_burtoni
ENSONIG00000002210	tnrc6c1	99	54.696	ENSHGLG00000004809	TNRC6C	87	53.440	Heterocephalus_glaber_female
ENSONIG00000002210	tnrc6c1	99	54.252	ENSHGLG00100012597	TNRC6C	87	53.140	Heterocephalus_glaber_male
ENSONIG00000002210	tnrc6c1	100	62.108	ENSIPUG00000000818	tnrc6c1	89	61.645	Ictalurus_punctatus
ENSONIG00000002210	tnrc6c1	93	55.353	ENSSTOG00000009101	TNRC6C	92	53.361	Ictidomys_tridecemlineatus
ENSONIG00000002210	tnrc6c1	95	55.431	ENSJJAG00000017055	Tnrc6c	80	52.848	Jaculus_jaculus
ENSONIG00000002210	tnrc6c1	100	75.561	ENSKMAG00000021023	tnrc6c1	100	75.998	Kryptolebias_marmoratus
ENSONIG00000002210	tnrc6c1	98	52.061	ENSLACG00000015283	TNRC6C	97	47.042	Latimeria_chalumnae
ENSONIG00000002210	tnrc6c1	93	77.405	ENSLOCG00000013377	tnrc6c1	85	75.327	Lepisosteus_oculatus
ENSONIG00000002210	tnrc6c1	96	53.483	ENSLAFG00000011122	TNRC6C	88	61.588	Loxodonta_africana
ENSONIG00000002210	tnrc6c1	96	52.326	ENSMFAG00000043943	TNRC6C	94	51.399	Macaca_fascicularis
ENSONIG00000002210	tnrc6c1	96	52.326	ENSMMUG00000011924	TNRC6C	94	51.399	Macaca_mulatta
ENSONIG00000002210	tnrc6c1	100	48.291	ENSMNEG00000030405	TNRC6C	94	51.338	Macaca_nemestrina
ENSONIG00000002210	tnrc6c1	96	52.326	ENSMLEG00000033436	TNRC6C	94	51.399	Mandrillus_leucophaeus
ENSONIG00000002210	tnrc6c1	100	82.522	ENSMAMG00000023613	tnrc6c1	94	83.583	Mastacembelus_armatus
ENSONIG00000002210	tnrc6c1	100	98.153	ENSMZEG00005010920	tnrc6c1	94	95.893	Maylandia_zebra
ENSONIG00000002210	tnrc6c1	90	67.730	ENSMGAG00000003906	TNRC6C	78	67.376	Meleagris_gallopavo
ENSONIG00000002210	tnrc6c1	96	53.772	ENSMAUG00000021618	Tnrc6c	94	49.879	Mesocricetus_auratus
ENSONIG00000002210	tnrc6c1	100	50.483	ENSMICG00000003952	TNRC6C	94	51.946	Microcebus_murinus
ENSONIG00000002210	tnrc6c1	96	53.586	ENSMOCG00000015879	Tnrc6c	91	50.851	Microtus_ochrogaster
ENSONIG00000002210	tnrc6c1	100	80.817	ENSMMOG00000005203	tnrc6c1	100	80.817	Mola_mola
ENSONIG00000002210	tnrc6c1	97	51.763	ENSMODG00000001785	TNRC6C	83	51.875	Monodelphis_domestica
ENSONIG00000002210	tnrc6c1	96	53.660	MGP_CAROLIEiJ_G0017465	Tnrc6c	87	52.921	Mus_caroli
ENSONIG00000002210	tnrc6c1	96	54.022	ENSMUSG00000025571	Tnrc6c	87	53.060	Mus_musculus
ENSONIG00000002210	tnrc6c1	96	53.883	MGP_PahariEiJ_G0018593	Tnrc6c	87	52.921	Mus_pahari
ENSONIG00000002210	tnrc6c1	96	53.814	MGP_SPRETEiJ_G0018309	Tnrc6c	87	52.851	Mus_spretus
ENSONIG00000002210	tnrc6c1	96	51.493	ENSMPUG00000013348	TNRC6C	83	49.672	Mustela_putorius_furo
ENSONIG00000002210	tnrc6c1	89	53.432	ENSMLUG00000014431	TNRC6C	85	47.846	Myotis_lucifugus
ENSONIG00000002210	tnrc6c1	96	50.068	ENSNGAG00000012203	Tnrc6c	83	50.819	Nannospalax_galili
ENSONIG00000002210	tnrc6c1	100	98.599	ENSNBRG00000005344	tnrc6c1	94	98.599	Neolamprologus_brichardi
ENSONIG00000002210	tnrc6c1	100	48.318	ENSNLEG00000000047	TNRC6C	84	48.325	Nomascus_leucogenys
ENSONIG00000002210	tnrc6c1	90	56.200	ENSMEUG00000005104	TNRC6C	87	65.559	Notamacropus_eugenii
ENSONIG00000002210	tnrc6c1	96	51.915	ENSODEG00000012499	TNRC6C	94	51.191	Octodon_degus
ENSONIG00000002210	tnrc6c1	88	49.466	ENSOANG00000009758	-	67	54.580	Ornithorhynchus_anatinus
ENSONIG00000002210	tnrc6c1	72	44.163	ENSOCUG00000006122	TNRC6C	83	56.164	Oryctolagus_cuniculus
ENSONIG00000002210	tnrc6c1	100	77.562	ENSORLG00000009837	tnrc6c1	100	86.081	Oryzias_latipes
ENSONIG00000002210	tnrc6c1	100	77.562	ENSORLG00020016510	tnrc6c1	100	78.250	Oryzias_latipes_hni
ENSONIG00000002210	tnrc6c1	78	73.923	ENSORLG00015000171	tnrc6c1	97	74.797	Oryzias_latipes_hsok
ENSONIG00000002210	tnrc6c1	100	78.938	ENSOMEG00000000357	tnrc6c1	94	79.250	Oryzias_melastigma
ENSONIG00000002210	tnrc6c1	95	50.956	ENSOGAG00000007197	TNRC6C	94	48.926	Otolemur_garnettii
ENSONIG00000002210	tnrc6c1	89	51.739	ENSOARG00000006041	TNRC6C	79	49.928	Ovis_aries
ENSONIG00000002210	tnrc6c1	100	51.081	ENSPPAG00000027160	TNRC6C	94	51.338	Pan_paniscus
ENSONIG00000002210	tnrc6c1	96	50.476	ENSPPRG00000018881	TNRC6C	94	51.183	Panthera_pardus
ENSONIG00000002210	tnrc6c1	81	56.109	ENSPTIG00000008791	TNRC6C	72	55.319	Panthera_tigris_altaica
ENSONIG00000002210	tnrc6c1	100	51.081	ENSPTRG00000009699	TNRC6C	94	51.338	Pan_troglodytes
ENSONIG00000002210	tnrc6c1	96	51.937	ENSPANG00000019994	TNRC6C	94	51.277	Papio_anubis
ENSONIG00000002210	tnrc6c1	100	56.409	ENSPKIG00000005428	tnrc6c1	100	56.545	Paramormyrops_kingsleyae
ENSONIG00000002210	tnrc6c1	94	55.649	ENSPSIG00000018069	TNRC6C	91	51.106	Pelodiscus_sinensis
ENSONIG00000002210	tnrc6c1	89	70.664	ENSPMGG00000022911	tnrc6c1	98	80.723	Periophthalmus_magnuspinnatus
ENSONIG00000002210	tnrc6c1	99	51.415	ENSPEMG00000009785	Tnrc6c	100	47.560	Peromyscus_maniculatus_bairdii
ENSONIG00000002210	tnrc6c1	52	39.888	ENSPCIG00000017421	-	83	41.420	Phascolarctos_cinereus
ENSONIG00000002210	tnrc6c1	100	82.283	ENSPFOG00000012560	tnrc6c1	99	80.447	Poecilia_formosa
ENSONIG00000002210	tnrc6c1	100	82.221	ENSPLAG00000021055	tnrc6c1	100	82.346	Poecilia_latipinna
ENSONIG00000002210	tnrc6c1	96	52.326	ENSPPYG00000008679	TNRC6C	83	50.030	Pongo_abelii
ENSONIG00000002210	tnrc6c1	82	66.742	ENSPCAG00000012510	TNRC6C	84	66.290	Procavia_capensis
ENSONIG00000002210	tnrc6c1	100	51.136	ENSPCOG00000021451	TNRC6C	94	51.795	Propithecus_coquereli
ENSONIG00000002210	tnrc6c1	87	59.848	ENSPVAG00000002008	TNRC6C	87	60.448	Pteropus_vampyrus
ENSONIG00000002210	tnrc6c1	100	97.778	ENSPNYG00000014477	tnrc6c1	100	97.778	Pundamilia_nyererei
ENSONIG00000002210	tnrc6c1	91	52.589	ENSRNOG00000022395	Tnrc6c	94	49.818	Rattus_norvegicus
ENSONIG00000002210	tnrc6c1	96	52.257	ENSRBIG00000027777	TNRC6C	94	51.399	Rhinopithecus_bieti
ENSONIG00000002210	tnrc6c1	96	52.257	ENSRROG00000042912	TNRC6C	94	51.399	Rhinopithecus_roxellana
ENSONIG00000002210	tnrc6c1	96	52.556	ENSSBOG00000023981	TNRC6C	94	49.583	Saimiri_boliviensis_boliviensis
ENSONIG00000002210	tnrc6c1	66	63.560	ENSSHAG00000018330	-	99	63.291	Sarcophilus_harrisii
ENSONIG00000002210	tnrc6c1	92	53.624	ENSSFOG00015004735	-	99	66.162	Scleropages_formosus
ENSONIG00000002210	tnrc6c1	100	60.859	ENSSFOG00015006475	tnrc6c1	92	60.224	Scleropages_formosus
ENSONIG00000002210	tnrc6c1	100	82.617	ENSSMAG00000012761	tnrc6c1	100	82.045	Scophthalmus_maximus
ENSONIG00000002210	tnrc6c1	100	85.884	ENSSDUG00000002366	tnrc6c1	93	86.009	Seriola_dumerili
ENSONIG00000002210	tnrc6c1	100	85.634	ENSSLDG00000025613	tnrc6c1	100	85.759	Seriola_lalandi_dorsalis
ENSONIG00000002210	tnrc6c1	83	61.345	ENSSARG00000006816	TNRC6C	82	60.169	Sorex_araneus
ENSONIG00000002210	tnrc6c1	96	53.284	ENSSPUG00000007341	TNRC6C	98	51.093	Sphenodon_punctatus
ENSONIG00000002210	tnrc6c1	98	85.949	ENSSPAG00000014977	tnrc6c1	92	86.625	Stegastes_partitus
ENSONIG00000002210	tnrc6c1	91	65.854	ENSSSCG00000034373	TNRC6C	94	66.147	Sus_scrofa
ENSONIG00000002210	tnrc6c1	96	57.133	ENSTGUG00000007733	TNRC6C	91	51.922	Taeniopygia_guttata
ENSONIG00000002210	tnrc6c1	100	77.951	ENSTRUG00000011685	tnrc6c1	100	74.157	Takifugu_rubripes
ENSONIG00000002210	tnrc6c1	100	75.156	ENSTNIG00000005273	tnrc6c1	100	76.535	Tetraodon_nigroviridis
ENSONIG00000002210	tnrc6c1	77	47.034	ENSTBEG00000005046	TNRC6C	100	50.469	Tupaia_belangeri
ENSONIG00000002210	tnrc6c1	97	54.363	ENSTTRG00000010828	TNRC6C	91	51.672	Tursiops_truncatus
ENSONIG00000002210	tnrc6c1	96	50.272	ENSUMAG00000013614	TNRC6C	84	49.534	Ursus_maritimus
ENSONIG00000002210	tnrc6c1	52	58.468	ENSVPAG00000006765	-	95	51.689	Vicugna_pacos
ENSONIG00000002210	tnrc6c1	96	54.769	ENSVVUG00000015268	TNRC6C	100	50.314	Vulpes_vulpes
ENSONIG00000002210	tnrc6c1	97	50.855	ENSXETG00000019470	tnrc6c	94	49.602	Xenopus_tropicalis
ENSONIG00000002210	tnrc6c1	100	82.386	ENSXMAG00000025971	tnrc6c1	100	82.448	Xiphophorus_maculatus