EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSONIG00000002536 (Gene tree)
Gene ID: 100692976
Gene Symbol: upf3b
Alias: -
Full Name: UPF3B%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Oreochromis_niloticus
Status: putative
Strand: Minus strand
Length: 6271 bases
Position: chrGL831169.1:2755820-2762090
Accession: 100692976
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSONIP00000003175	Smg4_UPF3	PF03467.15	1.7e-54	1	1
ENSONIP00000003176	Smg4_UPF3	PF03467.15	1.9e-54	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSONIT00000003177	-	2212	-	ENSONIP00000003176	464 (aa)	XP_003445248	I3J2T6
ENSONIT00000003176	-	1392	-	ENSONIP00000003175	464 (aa)	-	I3J2T5

Gene Model

Click here to download ENSONIG00000002536's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSONIG00000002536's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSONIG00000002536	upf3b	100	54.451	ENSG00000125351	UPF3B	96	68.900	Homo_sapiens
ENSONIG00000002536	upf3b	100	85.560	ENSAPOG00000012775	upf3b	100	84.914	Acanthochromis_polyacanthus
ENSONIG00000002536	upf3b	100	58.178	ENSAMEG00000000163	UPF3B	100	57.054	Ailuropoda_melanoleuca
ENSONIG00000002536	upf3b	100	84.946	ENSACIG00000013582	upf3b	100	85.591	Amphilophus_citrinellus
ENSONIG00000002536	upf3b	100	84.052	ENSAOCG00000000706	upf3b	100	83.405	Amphiprion_ocellaris
ENSONIG00000002536	upf3b	100	85.129	ENSAPEG00000005545	upf3b	100	84.483	Amphiprion_percula
ENSONIG00000002536	upf3b	100	83.726	ENSATEG00000018742	upf3b	100	83.940	Anabas_testudineus
ENSONIG00000002536	upf3b	99	60.294	ENSACAG00000003625	UPF3B	100	57.895	Anolis_carolinensis
ENSONIG00000002536	upf3b	92	49.318	ENSACAG00000001540	UPF3A	54	55.022	Anolis_carolinensis
ENSONIG00000002536	upf3b	100	55.072	ENSANAG00000025598	-	94	58.772	Aotus_nancymaae
ENSONIG00000002536	upf3b	100	58.385	ENSANAG00000021894	-	100	69.118	Aotus_nancymaae
ENSONIG00000002536	upf3b	100	95.690	ENSACLG00000001649	upf3b	100	95.690	Astatotilapia_calliptera
ENSONIG00000002536	upf3b	67	83.398	ENSAMXG00000000199	upf3b	100	83.398	Astyanax_mexicanus
ENSONIG00000002536	upf3b	55	69.853	ENSBTAG00000035615	UPF3B	88	69.118	Bos_taurus
ENSONIG00000002536	upf3b	100	57.764	ENSCJAG00000004975	UPF3B	100	68.750	Callithrix_jacchus
ENSONIG00000002536	upf3b	100	56.452	ENSCAFG00000018426	UPF3B	100	55.556	Canis_familiaris
ENSONIG00000002536	upf3b	100	55.901	ENSCAFG00020004074	UPF3B	95	62.712	Canis_lupus_dingo
ENSONIG00000002536	upf3b	89	42.512	ENSCHIG00000011454	-	50	50.211	Capra_hircus
ENSONIG00000002536	upf3b	96	57.950	ENSCHIG00000018011	-	88	68.750	Capra_hircus
ENSONIG00000002536	upf3b	100	57.056	ENSCHIG00000000247	-	100	55.556	Capra_hircus
ENSONIG00000002536	upf3b	100	57.764	ENSTSYG00000014690	UPF3B	96	63.721	Carlito_syrichta
ENSONIG00000002536	upf3b	66	52.000	ENSCCAG00000021964	-	100	52.000	Cebus_capucinus
ENSONIG00000002536	upf3b	92	40.899	ENSCCAG00000029813	-	51	62.987	Cebus_capucinus
ENSONIG00000002536	upf3b	100	54.244	ENSCATG00000017506	UPF3B	100	69.118	Cercocebus_atys
ENSONIG00000002536	upf3b	63	67.427	ENSCLAG00000003260	UPF3B	100	58.592	Chinchilla_lanigera
ENSONIG00000002536	upf3b	100	53.024	ENSCSAG00000018348	UPF3B	100	56.250	Chlorocebus_sabaeus
ENSONIG00000002536	upf3b	94	58.969	ENSCPBG00000020685	UPF3B	93	60.135	Chrysemys_picta_bellii
ENSONIG00000002536	upf3b	66	69.118	ENSCANG00000029220	UPF3B	100	69.118	Colobus_angolensis_palliatus
ENSONIG00000002536	upf3b	100	53.814	ENSCGRG00001006858	-	100	52.893	Cricetulus_griseus_chok1gshd
ENSONIG00000002536	upf3b	68	57.831	ENSCGRG00001013643	-	90	55.522	Cricetulus_griseus_chok1gshd
ENSONIG00000002536	upf3b	92	56.481	ENSCGRG00000007627	Upf3b	100	55.684	Cricetulus_griseus_crigri
ENSONIG00000002536	upf3b	99	76.507	ENSCSEG00000002046	upf3b	99	75.941	Cynoglossus_semilaevis
ENSONIG00000002536	upf3b	100	80.430	ENSCVAG00000005030	upf3b	100	80.215	Cyprinodon_variegatus
ENSONIG00000002536	upf3b	93	73.288	ENSDARG00000000489	upf3b	93	72.374	Danio_rerio
ENSONIG00000002536	upf3b	100	54.234	ENSDNOG00000008665	UPF3B	100	56.653	Dasypus_novemcinctus
ENSONIG00000002536	upf3b	100	57.143	ENSDORG00000006077	Upf3b	100	56.432	Dipodomys_ordii
ENSONIG00000002536	upf3b	99	56.846	ENSEASG00005012919	UPF3B	100	56.639	Equus_asinus_asinus
ENSONIG00000002536	upf3b	99	56.846	ENSECAG00000016947	UPF3B	100	56.639	Equus_caballus
ENSONIG00000002536	upf3b	99	70.041	ENSELUG00000020389	upf3b	100	72.371	Esox_lucius
ENSONIG00000002536	upf3b	100	55.761	ENSFCAG00000004388	UPF3B	100	57.261	Felis_catus
ENSONIG00000002536	upf3b	98	55.644	ENSFALG00000001569	UPF3B	99	53.267	Ficedula_albicollis
ENSONIG00000002536	upf3b	100	57.971	ENSFDAG00000018869	UPF3B	100	57.764	Fukomys_damarensis
ENSONIG00000002536	upf3b	100	81.505	ENSFHEG00000017895	upf3b	100	81.075	Fundulus_heteroclitus
ENSONIG00000002536	upf3b	100	68.710	ENSGMOG00000001621	upf3b	100	68.577	Gadus_morhua
ENSONIG00000002536	upf3b	99	56.584	ENSGALG00000008618	UPF3B	100	57.819	Gallus_gallus
ENSONIG00000002536	upf3b	100	79.570	ENSGAFG00000000829	upf3b	100	79.355	Gambusia_affinis
ENSONIG00000002536	upf3b	100	78.970	ENSGACG00000017435	upf3b	94	89.453	Gasterosteus_aculeatus
ENSONIG00000002536	upf3b	94	63.311	ENSGAGG00000001219	UPF3B	94	63.739	Gopherus_agassizii
ENSONIG00000002536	upf3b	100	54.451	ENSGGOG00000023995	UPF3B	100	69.118	Gorilla_gorilla
ENSONIG00000002536	upf3b	100	95.259	ENSHBUG00000017393	upf3b	100	95.259	Haplochromis_burtoni
ENSONIG00000002536	upf3b	72	56.000	ENSHGLG00000011189	-	54	69.565	Heterocephalus_glaber_female
ENSONIG00000002536	upf3b	100	57.764	ENSHGLG00000019582	-	100	57.350	Heterocephalus_glaber_female
ENSONIG00000002536	upf3b	100	54.865	ENSHGLG00100002042	-	61	68.794	Heterocephalus_glaber_male
ENSONIG00000002536	upf3b	68	58.982	ENSHGLG00100001889	-	54	69.565	Heterocephalus_glaber_male
ENSONIG00000002536	upf3b	100	73.673	ENSHCOG00000017004	upf3b	100	72.669	Hippocampus_comes
ENSONIG00000002536	upf3b	100	72.669	ENSIPUG00000019249	upf3b	100	72.669	Ictalurus_punctatus
ENSONIG00000002536	upf3b	100	57.971	ENSSTOG00000001101	UPF3B	100	57.884	Ictidomys_tridecemlineatus
ENSONIG00000002536	upf3b	94	55.824	ENSJJAG00000000053	Upf3b	100	54.564	Jaculus_jaculus
ENSONIG00000002536	upf3b	100	81.681	ENSKMAG00000020300	upf3b	100	82.759	Kryptolebias_marmoratus
ENSONIG00000002536	upf3b	60	88.809	ENSLBEG00000028689	upf3b	59	89.513	Labrus_bergylta
ENSONIG00000002536	upf3b	99	60.805	ENSLACG00000008691	UPF3B	57	80.597	Latimeria_chalumnae
ENSONIG00000002536	upf3b	67	74.522	ENSLOCG00000015238	upf3b	99	66.524	Lepisosteus_oculatus
ENSONIG00000002536	upf3b	100	54.865	ENSLAFG00000001267	UPF3B	100	55.943	Loxodonta_africana
ENSONIG00000002536	upf3b	100	54.037	ENSMFAG00000045414	UPF3B	100	69.118	Macaca_fascicularis
ENSONIG00000002536	upf3b	100	54.037	ENSMMUG00000020222	UPF3B	100	69.118	Macaca_mulatta
ENSONIG00000002536	upf3b	100	54.037	ENSMNEG00000039794	UPF3B	100	69.118	Macaca_nemestrina
ENSONIG00000002536	upf3b	100	54.244	ENSMLEG00000010999	UPF3B	100	69.118	Mandrillus_leucophaeus
ENSONIG00000002536	upf3b	100	95.474	ENSMZEG00005007871	upf3b	100	95.474	Maylandia_zebra
ENSONIG00000002536	upf3b	84	56.962	ENSMGAG00000007728	UPF3B	91	62.088	Meleagris_gallopavo
ENSONIG00000002536	upf3b	88	48.926	ENSMGAG00000014837	UPF3A	51	54.245	Meleagris_gallopavo
ENSONIG00000002536	upf3b	100	53.320	ENSMAUG00000008705	Upf3b	90	55.093	Mesocricetus_auratus
ENSONIG00000002536	upf3b	55	69.853	ENSMICG00000001743	UPF3B	85	69.118	Microcebus_murinus
ENSONIG00000002536	upf3b	100	53.831	ENSMOCG00000017893	Upf3b	100	52.727	Microtus_ochrogaster
ENSONIG00000002536	upf3b	100	80.043	ENSMMOG00000004183	upf3b	100	79.399	Mola_mola
ENSONIG00000002536	upf3b	90	61.283	ENSMODG00000010232	UPF3B	93	61.000	Monodelphis_domestica
ENSONIG00000002536	upf3b	100	83.906	ENSMALG00000008042	upf3b	100	83.047	Monopterus_albus
ENSONIG00000002536	upf3b	100	53.830	MGP_CAROLIEiJ_G0032999	Upf3b	100	53.320	Mus_caroli
ENSONIG00000002536	upf3b	100	53.623	ENSMUSG00000036572	Upf3b	100	53.527	Mus_musculus
ENSONIG00000002536	upf3b	100	54.865	MGP_PahariEiJ_G0031543	Upf3b	100	53.734	Mus_pahari
ENSONIG00000002536	upf3b	100	53.623	MGP_SPRETEiJ_G0034152	Upf3b	100	53.527	Mus_spretus
ENSONIG00000002536	upf3b	96	59.101	ENSMPUG00000001531	UPF3B	95	59.111	Mustela_putorius_furo
ENSONIG00000002536	upf3b	100	58.385	ENSMLUG00000010821	UPF3B	90	60.599	Myotis_lucifugus
ENSONIG00000002536	upf3b	100	54.451	ENSNGAG00000008231	Upf3b	100	52.697	Nannospalax_galili
ENSONIG00000002536	upf3b	95	56.629	ENSNLEG00000014897	UPF3B	90	60.138	Nomascus_leucogenys
ENSONIG00000002536	upf3b	100	57.025	ENSODEG00000002186	-	100	55.809	Octodon_degus
ENSONIG00000002536	upf3b	100	56.452	ENSOCUG00000010213	UPF3B	100	55.556	Oryctolagus_cuniculus
ENSONIG00000002536	upf3b	100	78.017	ENSORLG00000001026	upf3b	100	77.586	Oryzias_latipes
ENSONIG00000002536	upf3b	100	77.586	ENSORLG00020003758	upf3b	100	77.432	Oryzias_latipes_hni
ENSONIG00000002536	upf3b	97	47.134	ENSORLG00020014317	upf3a	55	65.038	Oryzias_latipes_hni
ENSONIG00000002536	upf3b	100	77.371	ENSORLG00015012954	upf3b	100	76.724	Oryzias_latipes_hsok
ENSONIG00000002536	upf3b	100	78.448	ENSOMEG00000014736	upf3b	100	77.802	Oryzias_melastigma
ENSONIG00000002536	upf3b	94	57.709	ENSOGAG00000033003	-	96	56.637	Otolemur_garnettii
ENSONIG00000002536	upf3b	100	54.451	ENSOGAG00000004643	-	100	56.846	Otolemur_garnettii
ENSONIG00000002536	upf3b	100	56.713	ENSOARG00000016051	-	100	55.221	Ovis_aries
ENSONIG00000002536	upf3b	100	54.451	ENSPPAG00000040390	UPF3B	100	69.118	Pan_paniscus
ENSONIG00000002536	upf3b	100	58.557	ENSPPRG00000023536	UPF3B	100	57.261	Panthera_pardus
ENSONIG00000002536	upf3b	100	58.012	ENSPTIG00000015264	UPF3B	100	56.939	Panthera_tigris_altaica
ENSONIG00000002536	upf3b	100	54.451	ENSPTRG00000022228	UPF3B	100	69.118	Pan_troglodytes
ENSONIG00000002536	upf3b	100	54.244	ENSPANG00000000900	UPF3B	100	69.118	Papio_anubis
ENSONIG00000002536	upf3b	100	66.667	ENSPKIG00000019226	upf3b	92	85.915	Paramormyrops_kingsleyae
ENSONIG00000002536	upf3b	57	67.041	ENSPSIG00000005833	UPF3B	86	68.443	Pelodiscus_sinensis
ENSONIG00000002536	upf3b	92	49.655	ENSPSIG00000007468	UPF3A	55	55.217	Pelodiscus_sinensis
ENSONIG00000002536	upf3b	55	89.844	ENSPMGG00000016067	upf3b	95	88.506	Periophthalmus_magnuspinnatus
ENSONIG00000002536	upf3b	100	54.752	ENSPEMG00000012352	Upf3b	100	53.416	Peromyscus_maniculatus_bairdii
ENSONIG00000002536	upf3b	77	54.260	ENSPCIG00000019590	-	64	68.493	Phascolarctos_cinereus
ENSONIG00000002536	upf3b	89	59.903	ENSPCIG00000028914	UPF3B	83	58.250	Phascolarctos_cinereus
ENSONIG00000002536	upf3b	93	49.087	ENSPLAG00000011960	upf3a	62	74.766	Poecilia_latipinna
ENSONIG00000002536	upf3b	100	80.430	ENSPLAG00000005105	upf3b	100	80.215	Poecilia_latipinna
ENSONIG00000002536	upf3b	100	80.430	ENSPLAG00000019922	upf3b	100	80.215	Poecilia_latipinna
ENSONIG00000002536	upf3b	100	80.430	ENSPMEG00000023532	upf3b	100	80.215	Poecilia_mexicana
ENSONIG00000002536	upf3b	66	68.864	ENSPPYG00000020675	-	82	68.864	Pongo_abelii
ENSONIG00000002536	upf3b	100	53.226	ENSPCAG00000009464	UPF3B	100	54.545	Procavia_capensis
ENSONIG00000002536	upf3b	100	58.385	ENSPCOG00000021960	UPF3B	100	57.054	Propithecus_coquereli
ENSONIG00000002536	upf3b	99	47.571	ENSPVAG00000014075	UPF3B	61	56.610	Pteropus_vampyrus
ENSONIG00000002536	upf3b	100	95.043	ENSPNYG00000009846	upf3b	100	93.966	Pundamilia_nyererei
ENSONIG00000002536	upf3b	99	73.774	ENSPNAG00000021528	upf3b	86	87.209	Pygocentrus_nattereri
ENSONIG00000002536	upf3b	100	54.037	ENSRNOG00000039994	Upf3b	100	53.320	Rattus_norvegicus
ENSONIG00000002536	upf3b	85	54.040	ENSRBIG00000037219	UPF3B	100	58.690	Rhinopithecus_bieti
ENSONIG00000002536	upf3b	100	54.451	ENSRROG00000041031	UPF3B	100	69.118	Rhinopithecus_roxellana
ENSONIG00000002536	upf3b	100	55.694	ENSSBOG00000019740	UPF3B	100	69.118	Saimiri_boliviensis_boliviensis
ENSONIG00000002536	upf3b	98	57.173	ENSSHAG00000008634	UPF3B	99	55.625	Sarcophilus_harrisii
ENSONIG00000002536	upf3b	100	69.231	ENSSFOG00015005614	upf3b	100	68.670	Scleropages_formosus
ENSONIG00000002536	upf3b	100	82.692	ENSSMAG00000012913	upf3b	100	91.797	Scophthalmus_maximus
ENSONIG00000002536	upf3b	89	44.175	ENSSDUG00000009680	upf3a	55	78.652	Seriola_dumerili
ENSONIG00000002536	upf3b	100	85.408	ENSSDUG00000005682	upf3b	100	85.622	Seriola_dumerili
ENSONIG00000002536	upf3b	100	86.266	ENSSLDG00000003130	upf3b	100	85.408	Seriola_lalandi_dorsalis
ENSONIG00000002536	upf3b	92	53.933	ENSSARG00000004147	UPF3B	100	54.955	Sorex_araneus
ENSONIG00000002536	upf3b	99	58.487	ENSSPUG00000013082	UPF3B	100	56.879	Sphenodon_punctatus
ENSONIG00000002536	upf3b	100	85.560	ENSSPAG00000009989	upf3b	100	85.129	Stegastes_partitus
ENSONIG00000002536	upf3b	100	55.280	ENSSSCG00000012617	UPF3B	100	56.224	Sus_scrofa
ENSONIG00000002536	upf3b	91	62.005	ENSTGUG00000003413	UPF3B	99	61.072	Taeniopygia_guttata
ENSONIG00000002536	upf3b	87	52.683	ENSTGUG00000009493	UPF3A	98	45.025	Taeniopygia_guttata
ENSONIG00000002536	upf3b	100	78.326	ENSTRUG00000010645	upf3b	100	77.682	Takifugu_rubripes
ENSONIG00000002536	upf3b	100	67.804	ENSTNIG00000015763	upf3b	100	63.326	Tetraodon_nigroviridis
ENSONIG00000002536	upf3b	100	47.879	ENSTBEG00000003229	UPF3B	80	58.608	Tupaia_belangeri
ENSONIG00000002536	upf3b	100	56.315	ENSUAMG00000024565	UPF3B	100	54.564	Ursus_americanus
ENSONIG00000002536	upf3b	93	55.069	ENSUMAG00000002150	UPF3B	91	54.734	Ursus_maritimus
ENSONIG00000002536	upf3b	88	57.583	ENSVPAG00000009971	UPF3B	100	56.532	Vicugna_pacos
ENSONIG00000002536	upf3b	100	55.694	ENSVVUG00000011594	UPF3B	97	68.900	Vulpes_vulpes
ENSONIG00000002536	upf3b	96	54.746	ENSXETG00000007440	upf3b	84	77.320	Xenopus_tropicalis
ENSONIG00000002536	upf3b	100	73.333	ENSXCOG00000016586	upf3b	97	91.282	Xiphophorus_couchianus
ENSONIG00000002536	upf3b	100	79.140	ENSXMAG00000013680	upf3b	100	78.925	Xiphophorus_maculatus