EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSONIG00000002717 (Gene tree)
Gene ID
100712541
Gene Symbol
pabpc1b
Alias
-
Full Name
poly A binding protein%2C cytoplasmic 1 b
Gene Type
protein_coding
Species
Oreochromis_niloticus
Status
putative
Strand
Plus strand
Length
9616 bases
Position
chrGL831161.1:3793090-3802705
Accession
ZDB-GENE-050308-1
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSONIP00000003406PABPPF00658.183.7e-3211
ENSONIP00000003406RRM_5PF13893.63.1e-1012
ENSONIP00000003406RRM_5PF13893.63.1e-1022
ENSONIP00000003406RRM_1PF00076.224e-8914
ENSONIP00000003406RRM_1PF00076.224e-8924
ENSONIP00000003406RRM_1PF00076.224e-8934
ENSONIP00000003406RRM_1PF00076.224e-8944
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSONIT00000003407-5685-ENSONIP00000003406634 (aa)-I3J3G6
Gene Model
Click here to download ENSONIG00000002717's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSONIG00000002717's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSONIG00000002717pabpc1b5336.047ENSONIG00000008624-5136.047
ENSONIG00000002717pabpc1b5937.349ENSONIG00000001538elavl39137.349
ENSONIG00000002717pabpc1b5937.349ENSONIG00000007552ELAVL29137.349
ENSONIG00000002717pabpc1b5735.165ENSONIG00000003197-9435.165
ENSONIG00000002717pabpc1b5932.895ENSONIG00000008300celf16632.895
ENSONIG00000002717pabpc1b6037.333ENSONIG00000013576rbm195137.333
ENSONIG00000002717pabpc1b5239.759ENSONIG00000004856celf5a5937.634
ENSONIG00000002717pabpc1b9870.110ENSONIG00000017314pabpc1l9969.953
ENSONIG00000002717pabpc1b5930.208ENSONIG00000015897tia17230.208
ENSONIG00000002717pabpc1b9976.667ENSONIG00000008176pabpc49976.656
ENSONIG00000002717pabpc1b5936.145ENSONIG00000002360elavl48636.145
ENSONIG00000002717pabpc1b10089.342ENSONIG00000006871-10089.342
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSONIG00000002717pabpc1b5878.061ENSG00000184388PABPC1L2B9878.061Homo_sapiens
ENSONIG00000002717pabpc1b5878.061ENSG00000186288PABPC1L2A9878.061Homo_sapiens
ENSONIG00000002717pabpc1b10096.372ENSAPOG00000017776pabpc1b10096.372Acanthochromis_polyacanthus
ENSONIG00000002717pabpc1b10089.498ENSAPOG00000015105pabpc1a10089.342Acanthochromis_polyacanthus
ENSONIG00000002717pabpc1b5978.061ENSAMEG00000019441-9878.061Ailuropoda_melanoleuca
ENSONIG00000002717pabpc1b10089.498ENSACIG00000004685pabpc1a10089.498Amphilophus_citrinellus
ENSONIG00000002717pabpc1b10091.654ENSACIG00000018366pabpc1b10091.654Amphilophus_citrinellus
ENSONIG00000002717pabpc1b10089.028ENSAOCG00000011656pabpc1a10089.185Amphiprion_ocellaris
ENSONIG00000002717pabpc1b10095.899ENSAOCG00000019839pabpc1b10095.899Amphiprion_ocellaris
ENSONIG00000002717pabpc1b10089.028ENSAPEG00000006963pabpc1a10089.185Amphiprion_percula
ENSONIG00000002717pabpc1b10095.899ENSAPEG00000010435pabpc1b10095.899Amphiprion_percula
ENSONIG00000002717pabpc1b10095.597ENSATEG00000012917pabpc1b10095.597Anabas_testudineus
ENSONIG00000002717pabpc1b10089.342ENSATEG00000024852pabpc1a10089.498Anabas_testudineus
ENSONIG00000002717pabpc1b5878.061ENSANAG00000019431-9878.061Aotus_nancymaae
ENSONIG00000002717pabpc1b5878.061ENSANAG00000019429-9878.061Aotus_nancymaae
ENSONIG00000002717pabpc1b10099.369ENSACLG00000014335pabpc1b10099.369Astatotilapia_calliptera
ENSONIG00000002717pabpc1b9993.269ENSACLG00000009399pabpc1a10093.269Astatotilapia_calliptera
ENSONIG00000002717pabpc1b10093.386ENSAMXG00000008599pabpc1b10093.386Astyanax_mexicanus
ENSONIG00000002717pabpc1b5975.120ENSBTAG00000052491-9875.120Bos_taurus
ENSONIG00000002717pabpc1b5977.073ENSBTAG00000050902-9877.073Bos_taurus
ENSONIG00000002717pabpc1b5878.061ENSCJAG00000041326-9878.061Callithrix_jacchus
ENSONIG00000002717pabpc1b5977.073ENSCAFG00020002052-9877.073Canis_lupus_dingo
ENSONIG00000002717pabpc1b5878.061ENSCHIG00000011138-9878.061Capra_hircus
ENSONIG00000002717pabpc1b5878.061ENSCHIG00000006283-9878.061Capra_hircus
ENSONIG00000002717pabpc1b5878.061ENSTSYG00000001775-9878.061Carlito_syrichta
ENSONIG00000002717pabpc1b5978.061ENSCPOG00000009525-9878.061Cavia_porcellus
ENSONIG00000002717pabpc1b5878.061ENSCCAG00000031524-9878.061Cebus_capucinus
ENSONIG00000002717pabpc1b5878.061ENSCATG00000043125-9878.061Cercocebus_atys
ENSONIG00000002717pabpc1b5878.061ENSCATG00000042826-9878.061Cercocebus_atys
ENSONIG00000002717pabpc1b5877.041ENSCLAG00000017409-9877.041Chinchilla_lanigera
ENSONIG00000002717pabpc1b5877.041ENSCLAG00000017412-9877.041Chinchilla_lanigera
ENSONIG00000002717pabpc1b5978.061ENSCSAG00000000102-9878.061Chlorocebus_sabaeus
ENSONIG00000002717pabpc1b5879.006ENSCGRG00001023387-9676.804Cricetulus_griseus_chok1gshd
ENSONIG00000002717pabpc1b10090.379ENSCSEG00000015241-10090.379Cynoglossus_semilaevis
ENSONIG00000002717pabpc1b9989.841ENSCSEG00000013324pabpc1a9990.000Cynoglossus_semilaevis
ENSONIG00000002717pabpc1b10092.441ENSCVAG00000005489pabpc1b10092.441Cyprinodon_variegatus
ENSONIG00000002717pabpc1b10089.498ENSCVAG00000021872pabpc1a10089.185Cyprinodon_variegatus
ENSONIG00000002717pabpc1b10090.566ENSDARG00000017219pabpc1a10090.566Danio_rerio
ENSONIG00000002717pabpc1b10094.331ENSDARG00000021140pabpc1b10094.961Danio_rerio
ENSONIG00000002717pabpc1b5979.365ENSDNOG00000030926-9877.551Dasypus_novemcinctus
ENSONIG00000002717pabpc1b5876.531ENSDORG00000011362-9876.531Dipodomys_ordii
ENSONIG00000002717pabpc1b5976.699ENSEASG00005010399-9876.699Equus_asinus_asinus
ENSONIG00000002717pabpc1b5976.699ENSECAG00000002620-9876.699Equus_caballus
ENSONIG00000002717pabpc1b5973.469ENSEEUG00000008203-9873.469Erinaceus_europaeus
ENSONIG00000002717pabpc1b5958.621ENSELUG00000005389-9758.621Esox_lucius
ENSONIG00000002717pabpc1b10090.581ENSELUG00000015062-10090.581Esox_lucius
ENSONIG00000002717pabpc1b9990.723ENSELUG00000003614pabpc1a10090.566Esox_lucius
ENSONIG00000002717pabpc1b5878.061ENSFCAG00000039701-9878.061Felis_catus
ENSONIG00000002717pabpc1b5978.061ENSFDAG00000005484-9878.061Fukomys_damarensis
ENSONIG00000002717pabpc1b10092.744ENSFHEG00000008186pabpc1b10092.744Fundulus_heteroclitus
ENSONIG00000002717pabpc1b10088.871ENSFHEG00000018979pabpc1a10089.028Fundulus_heteroclitus
ENSONIG00000002717pabpc1b10084.579ENSGMOG00000002448-10084.579Gadus_morhua
ENSONIG00000002717pabpc1b9987.926ENSGMOG00000013448pabpc1a10087.790Gadus_morhua
ENSONIG00000002717pabpc1b10088.715ENSGAFG00000019750pabpc1a10088.871Gambusia_affinis
ENSONIG00000002717pabpc1b10093.849ENSGAFG00000010193pabpc1b10093.849Gambusia_affinis
ENSONIG00000002717pabpc1b10089.498ENSGACG00000003572pabpc1a10089.498Gasterosteus_aculeatus
ENSONIG00000002717pabpc1b10091.433ENSGACG00000003771pabpc1b10091.745Gasterosteus_aculeatus
ENSONIG00000002717pabpc1b5878.061ENSGGOG00000038606-9878.061Gorilla_gorilla
ENSONIG00000002717pabpc1b5878.061ENSGGOG00000043933-9878.061Gorilla_gorilla
ENSONIG00000002717pabpc1b10099.369ENSHBUG00000002075pabpc1b10099.369Haplochromis_burtoni
ENSONIG00000002717pabpc1b9993.269ENSHBUG00000020487pabpc1a10093.269Haplochromis_burtoni
ENSONIG00000002717pabpc1b5878.061ENSHGLG00000019668-9878.061Heterocephalus_glaber_female
ENSONIG00000002717pabpc1b5878.061ENSHGLG00000019762-9878.061Heterocephalus_glaber_female
ENSONIG00000002717pabpc1b5878.061ENSHGLG00100020854-9878.061Heterocephalus_glaber_male
ENSONIG00000002717pabpc1b10089.342ENSHCOG00000013502pabpc1a10089.498Hippocampus_comes
ENSONIG00000002717pabpc1b9871.774ENSHCOG00000003175pabpc1b9971.659Hippocampus_comes
ENSONIG00000002717pabpc1b10086.929ENSIPUG00000010791-10086.929Ictalurus_punctatus
ENSONIG00000002717pabpc1b7555.224ENSIPUG00000018724-7855.224Ictalurus_punctatus
ENSONIG00000002717pabpc1b7455.532ENSIPUG00000021244-6555.532Ictalurus_punctatus
ENSONIG00000002717pabpc1b10087.402ENSIPUG00000008848pabpc1a10087.402Ictalurus_punctatus
ENSONIG00000002717pabpc1b5978.571ENSSTOG00000026028-9878.571Ictidomys_tridecemlineatus
ENSONIG00000002717pabpc1b5978.571ENSSTOG00000022096-9878.571Ictidomys_tridecemlineatus
ENSONIG00000002717pabpc1b5877.551ENSJJAG00000007037-9877.551Jaculus_jaculus
ENSONIG00000002717pabpc1b10093.218ENSKMAG00000008049pabpc1b10093.533Kryptolebias_marmoratus
ENSONIG00000002717pabpc1b10089.185ENSKMAG00000000605pabpc1a10088.871Kryptolebias_marmoratus
ENSONIG00000002717pabpc1b10094.795ENSLBEG00000026845pabpc1b10094.795Labrus_bergylta
ENSONIG00000002717pabpc1b10089.185ENSLBEG00000024002-10089.185Labrus_bergylta
ENSONIG00000002717pabpc1b5977.436ENSLAFG00000023096-9877.436Loxodonta_africana
ENSONIG00000002717pabpc1b5877.665ENSMFAG00000028878-9877.665Macaca_fascicularis
ENSONIG00000002717pabpc1b5878.061ENSMMUG00000009740-9878.061Macaca_mulatta
ENSONIG00000002717pabpc1b5878.061ENSMMUG00000039929-9878.061Macaca_mulatta
ENSONIG00000002717pabpc1b5878.061ENSMMUG00000037681-9878.061Macaca_mulatta
ENSONIG00000002717pabpc1b5878.061ENSMNEG00000037732-9878.061Macaca_nemestrina
ENSONIG00000002717pabpc1b5878.061ENSMLEG00000027495-9878.061Mandrillus_leucophaeus
ENSONIG00000002717pabpc1b9993.029ENSMAMG00000004502-10093.029Mastacembelus_armatus
ENSONIG00000002717pabpc1b10095.584ENSMAMG00000014610pabpc1b10095.584Mastacembelus_armatus
ENSONIG00000002717pabpc1b10099.369ENSMZEG00005026745pabpc1b10099.369Maylandia_zebra
ENSONIG00000002717pabpc1b9993.269ENSMZEG00005025416pabpc1a10093.269Maylandia_zebra
ENSONIG00000002717pabpc1b5878.061ENSMICG00000047642-9878.061Microcebus_murinus
ENSONIG00000002717pabpc1b10088.013ENSMMOG00000018009pabpc1b10088.170Mola_mola
ENSONIG00000002717pabpc1b9991.827ENSMMOG00000018044pabpc1a10091.827Mola_mola
ENSONIG00000002717pabpc1b9966.297ENSMODG00000015024-9966.297Monodelphis_domestica
ENSONIG00000002717pabpc1b9873.248ENSMODG00000013156-9873.408Monodelphis_domestica
ENSONIG00000002717pabpc1b10088.801ENSMALG00000006066pabpc1b10088.959Monopterus_albus
ENSONIG00000002717pabpc1b10089.185ENSMALG00000013020-10089.498Monopterus_albus
ENSONIG00000002717pabpc1b5880.874ENSNGAG00000012688-9877.551Nannospalax_galili
ENSONIG00000002717pabpc1b9993.269ENSNBRG00000003068-10093.269Neolamprologus_brichardi
ENSONIG00000002717pabpc1b10099.054ENSNBRG00000013737pabpc1b10099.054Neolamprologus_brichardi
ENSONIG00000002717pabpc1b5878.061ENSNLEG00000018128-9878.061Nomascus_leucogenys
ENSONIG00000002717pabpc1b5877.551ENSODEG00000018540-9877.551Octodon_degus
ENSONIG00000002717pabpc1b5978.061ENSOCUG00000002565-9878.061Oryctolagus_cuniculus
ENSONIG00000002717pabpc1b10087.697ENSORLG00000003008-10087.697Oryzias_latipes
ENSONIG00000002717pabpc1b9991.924ENSORLG00000002691pabpc1a9694.595Oryzias_latipes
ENSONIG00000002717pabpc1b10088.088ENSORLG00020022398pabpc1a10088.245Oryzias_latipes_hni
ENSONIG00000002717pabpc1b10087.539ENSORLG00020022259-10087.539Oryzias_latipes_hni
ENSONIG00000002717pabpc1b10087.855ENSORLG00015010932-10087.855Oryzias_latipes_hsok
ENSONIG00000002717pabpc1b10087.931ENSORLG00015013633pabpc110088.088Oryzias_latipes_hsok
ENSONIG00000002717pabpc1b10088.245ENSOMEG00000020219pabpc1a10088.401Oryzias_melastigma
ENSONIG00000002717pabpc1b9286.571ENSOMEG00000013627pabpc1b10083.524Oryzias_melastigma
ENSONIG00000002717pabpc1b5978.061ENSOGAG00000026047-9878.061Otolemur_garnettii
ENSONIG00000002717pabpc1b5978.061ENSOGAG00000029513-9878.061Otolemur_garnettii
ENSONIG00000002717pabpc1b5978.061ENSOARG00000005943-9878.061Ovis_aries
ENSONIG00000002717pabpc1b5878.061ENSPPAG00000012920-9878.061Pan_paniscus
ENSONIG00000002717pabpc1b5978.061ENSPPRG00000011804-9878.061Panthera_pardus
ENSONIG00000002717pabpc1b5978.061ENSPPRG00000011809-9878.061Panthera_pardus
ENSONIG00000002717pabpc1b5878.061ENSPTRG00000028252-9878.061Pan_troglodytes
ENSONIG00000002717pabpc1b5878.061ENSPANG00000011549-9878.061Papio_anubis
ENSONIG00000002717pabpc1b10094.646ENSPKIG00000005676pabpc1b10094.488Paramormyrops_kingsleyae
ENSONIG00000002717pabpc1b7093.722ENSPMGG00000023134-9793.722Periophthalmus_magnuspinnatus
ENSONIG00000002717pabpc1b7091.928ENSPMGG00000022487pabpc1a9291.928Periophthalmus_magnuspinnatus
ENSONIG00000002717pabpc1b9970.860ENSPCIG00000016995-5570.860Phascolarctos_cinereus
ENSONIG00000002717pabpc1b10087.538ENSPFOG00000010815pabpc1a10087.692Poecilia_formosa
ENSONIG00000002717pabpc1b10093.375ENSPFOG00000005917pabpc1b10093.375Poecilia_formosa
ENSONIG00000002717pabpc1b10093.691ENSPLAG00000001388pabpc1b10093.691Poecilia_latipinna
ENSONIG00000002717pabpc1b10089.185ENSPLAG00000004114pabpc1a10089.342Poecilia_latipinna
ENSONIG00000002717pabpc1b10093.375ENSPMEG00000014399pabpc1b10093.375Poecilia_mexicana
ENSONIG00000002717pabpc1b10089.185ENSPMEG00000001334pabpc1a10089.342Poecilia_mexicana
ENSONIG00000002717pabpc1b9992.788ENSPREG00000019595pabpc1a10092.788Poecilia_reticulata
ENSONIG00000002717pabpc1b10093.691ENSPREG00000010911pabpc1b10093.691Poecilia_reticulata
ENSONIG00000002717pabpc1b5978.061ENSPPYG00000020468-9878.061Pongo_abelii
ENSONIG00000002717pabpc1b5978.061ENSPCAG00000005308-9878.061Procavia_capensis
ENSONIG00000002717pabpc1b5878.571ENSPCOG00000026349-9878.571Propithecus_coquereli
ENSONIG00000002717pabpc1b5978.974ENSPVAG00000016117-9878.974Pteropus_vampyrus
ENSONIG00000002717pabpc1b10089.342ENSPNYG00000005192pabpc1a10089.342Pundamilia_nyererei
ENSONIG00000002717pabpc1b10099.369ENSPNYG00000012578pabpc1b10099.369Pundamilia_nyererei
ENSONIG00000002717pabpc1b10093.386ENSPNAG00000024626pabpc1b10093.386Pygocentrus_nattereri
ENSONIG00000002717pabpc1b10089.937ENSPNAG00000028408pabpc1a10089.780Pygocentrus_nattereri
ENSONIG00000002717pabpc1b5878.061ENSRBIG00000027173-9878.061Rhinopithecus_bieti
ENSONIG00000002717pabpc1b9190.071ENSRBIG00000028738-9590.071Rhinopithecus_bieti
ENSONIG00000002717pabpc1b5878.061ENSRROG00000017404-9878.061Rhinopithecus_roxellana
ENSONIG00000002717pabpc1b9863.183ENSSHAG00000000511-10063.183Sarcophilus_harrisii
ENSONIG00000002717pabpc1b10090.551ENSSFOG00015006662pabpc1a10090.551Scleropages_formosus
ENSONIG00000002717pabpc1b10094.322ENSSFOG00015002752-10094.322Scleropages_formosus
ENSONIG00000002717pabpc1b6979.769ENSSFOG00015019668-9179.769Scleropages_formosus
ENSONIG00000002717pabpc1b10089.185ENSSMAG00000010803pabpc1a10089.185Scophthalmus_maximus
ENSONIG00000002717pabpc1b10094.479ENSSMAG00000006869pabpc1b10094.479Scophthalmus_maximus
ENSONIG00000002717pabpc1b10089.655ENSSDUG00000006675pabpc1a10089.655Seriola_dumerili
ENSONIG00000002717pabpc1b10094.006ENSSDUG00000011965pabpc1b10094.006Seriola_dumerili
ENSONIG00000002717pabpc1b10095.775ENSSLDG00000014156pabpc1b10095.775Seriola_lalandi_dorsalis
ENSONIG00000002717pabpc1b10089.655ENSSLDG00000011661pabpc1a10089.655Seriola_lalandi_dorsalis
ENSONIG00000002717pabpc1b10089.342ENSSPAG00000014453-10089.498Stegastes_partitus
ENSONIG00000002717pabpc1b10096.530ENSSPAG00000019265pabpc1b10096.530Stegastes_partitus
ENSONIG00000002717pabpc1b5878.061ENSSSCG00000032167-9878.061Sus_scrofa
ENSONIG00000002717pabpc1b5878.061ENSSSCG00000036336-9878.061Sus_scrofa
ENSONIG00000002717pabpc1b10090.551ENSTRUG00000003767-10090.709Takifugu_rubripes
ENSONIG00000002717pabpc1b10088.401ENSTRUG00000011577-10088.401Takifugu_rubripes
ENSONIG00000002717pabpc1b10090.282ENSTNIG00000009153pabpc1b10090.282Tetraodon_nigroviridis
ENSONIG00000002717pabpc1b10085.626ENSTNIG00000013307pabpc1a10085.626Tetraodon_nigroviridis
ENSONIG00000002717pabpc1b5978.061ENSTTRG00000013181-9878.061Tursiops_truncatus
ENSONIG00000002717pabpc1b5878.061ENSUAMG00000008089-9878.061Ursus_americanus
ENSONIG00000002717pabpc1b9753.171ENSUMAG00000023926-8967.403Ursus_maritimus
ENSONIG00000002717pabpc1b5878.061ENSUMAG00000003364-9878.061Ursus_maritimus
ENSONIG00000002717pabpc1b5977.000ENSVVUG00000015892-9777.000Vulpes_vulpes
ENSONIG00000002717pabpc1b9945.312ENSXETG00000015439-10045.312Xenopus_tropicalis
ENSONIG00000002717pabpc1b10089.117ENSXCOG00000019901pabpc1b10089.117Xiphophorus_couchianus
ENSONIG00000002717pabpc1b10085.804ENSXCOG00000017066pabpc1a10086.120Xiphophorus_couchianus
ENSONIG00000002717pabpc1b10093.691ENSXMAG00000003753pabpc1b10093.691Xiphophorus_maculatus
ENSONIG00000002717pabpc1b10089.185ENSXMAG00000002555pabpc1a10089.342Xiphophorus_maculatus

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