EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSONIG00000002730 (Gene tree)
Gene ID: 100690367
Gene Symbol: sf3b4
Alias: -
Full Name: splicing factor 3b subunit 4
Gene Type: protein_coding
Species: Oreochromis_niloticus
Status: putative
Strand: Plus strand
Length: 8307 bases
Position: chrGL831161.1:3824776-3833082
Accession: 100690367
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSONIP00000003422	RRM_1	PF00076.22	2.4e-39	1	2
ENSONIP00000003422	RRM_1	PF00076.22	2.4e-39	2	2
ENSONIP00000003423	RRM_1	PF00076.22	2.4e-39	1	2
ENSONIP00000003423	RRM_1	PF00076.22	2.4e-39	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSONIT00000003423	-	2710	-	ENSONIP00000003422	401 (aa)	XP_003444153	I3J3I2
ENSONIT00000003424	-	1215	-	ENSONIP00000003423	404 (aa)	-	I3J3I3

Gene Model

Click here to download ENSONIG00000002730's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSONIG00000002730's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSONIG00000002730	sf3b4	52	38.372	ENSONIG00000007364	tia1l	78	36.782

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSONIG00000002730	sf3b4	57	97.807	ENSG00000143368	SF3B4	99	95.767	Homo_sapiens
ENSONIG00000002730	sf3b4	86	94.493	ENSAPOG00000017647	sf3b4	87	94.220	Acanthochromis_polyacanthus
ENSONIG00000002730	sf3b4	57	97.807	ENSAMEG00000010073	SF3B4	56	95.359	Ailuropoda_melanoleuca
ENSONIG00000002730	sf3b4	70	85.765	ENSACIG00000018455	sf3b4	70	98.312	Amphilophus_citrinellus
ENSONIG00000002730	sf3b4	86	93.913	ENSAOCG00000019801	sf3b4	87	93.642	Amphiprion_ocellaris
ENSONIG00000002730	sf3b4	86	93.913	ENSAPEG00000010365	sf3b4	87	93.642	Amphiprion_percula
ENSONIG00000002730	sf3b4	68	95.221	ENSATEG00000012844	sf3b4	67	95.149	Anabas_testudineus
ENSONIG00000002730	sf3b4	53	100.000	ENSACAG00000010019	SF3B4	57	96.203	Anolis_carolinensis
ENSONIG00000002730	sf3b4	57	97.807	ENSANAG00000031025	SF3B4	56	95.359	Aotus_nancymaae
ENSONIG00000002730	sf3b4	100	99.002	ENSACLG00000014260	sf3b4	100	99.002	Astatotilapia_calliptera
ENSONIG00000002730	sf3b4	61	98.354	ENSAMXG00000008282	sf3b4	66	96.578	Astyanax_mexicanus
ENSONIG00000002730	sf3b4	57	97.807	ENSBTAG00000012495	SF3B4	56	95.359	Bos_taurus
ENSONIG00000002730	sf3b4	50	96.040	ENSBTAG00000012793	-	52	93.365	Bos_taurus
ENSONIG00000002730	sf3b4	57	97.807	ENSCAFG00000011617	SF3B4	56	95.359	Canis_familiaris
ENSONIG00000002730	sf3b4	57	97.807	ENSCAFG00020019775	SF3B4	56	95.359	Canis_lupus_dingo
ENSONIG00000002730	sf3b4	73	59.539	ENSCHIG00000006654	-	50	74.627	Capra_hircus
ENSONIG00000002730	sf3b4	57	97.807	ENSCHIG00000025663	-	56	95.359	Capra_hircus
ENSONIG00000002730	sf3b4	57	97.807	ENSTSYG00000009295	SF3B4	56	95.359	Carlito_syrichta
ENSONIG00000002730	sf3b4	58	94.086	ENSCAPG00000006451	SF3B4	51	94.475	Cavia_aperea
ENSONIG00000002730	sf3b4	57	97.807	ENSCPOG00000008267	SF3B4	56	95.359	Cavia_porcellus
ENSONIG00000002730	sf3b4	57	96.930	ENSCCAG00000021751	-	53	94.515	Cebus_capucinus
ENSONIG00000002730	sf3b4	75	70.159	ENSCCAG00000019823	-	51	85.514	Cebus_capucinus
ENSONIG00000002730	sf3b4	57	97.807	ENSCATG00000033114	SF3B4	56	95.359	Cercocebus_atys
ENSONIG00000002730	sf3b4	57	97.807	ENSCLAG00000015851	SF3B4	56	95.359	Chinchilla_lanigera
ENSONIG00000002730	sf3b4	57	97.807	ENSCSAG00000018129	SF3B4	56	95.359	Chlorocebus_sabaeus
ENSONIG00000002730	sf3b4	53	100.000	ENSCPBG00000008041	SF3B4	57	95.781	Chrysemys_picta_bellii
ENSONIG00000002730	sf3b4	56	88.393	ENSCING00000002337	-	57	90.610	Ciona_intestinalis
ENSONIG00000002730	sf3b4	52	91.429	ENSCSAVG00000007809	-	94	79.188	Ciona_savignyi
ENSONIG00000002730	sf3b4	57	97.807	ENSCANG00000035579	SF3B4	56	95.359	Colobus_angolensis_palliatus
ENSONIG00000002730	sf3b4	57	97.807	ENSCGRG00001003590	Sf3b4	56	95.359	Cricetulus_griseus_chok1gshd
ENSONIG00000002730	sf3b4	57	97.807	ENSCGRG00000016914	Sf3b4	56	95.359	Cricetulus_griseus_crigri
ENSONIG00000002730	sf3b4	67	95.131	ENSCVAG00000005536	sf3b4	69	93.284	Cyprinodon_variegatus
ENSONIG00000002730	sf3b4	61	97.531	ENSDARG00000018574	sf3b4	67	94.403	Danio_rerio
ENSONIG00000002730	sf3b4	55	92.273	ENSDNOG00000048908	-	53	91.928	Dasypus_novemcinctus
ENSONIG00000002730	sf3b4	97	65.750	ENSDNOG00000037231	-	50	87.245	Dasypus_novemcinctus
ENSONIG00000002730	sf3b4	57	97.807	ENSDORG00000016366	Sf3b4	56	95.359	Dipodomys_ordii
ENSONIG00000002730	sf3b4	57	87.719	ENSETEG00000008963	SF3B4	56	85.654	Echinops_telfairi
ENSONIG00000002730	sf3b4	57	97.807	ENSEASG00005001477	SF3B4	56	95.359	Equus_asinus_asinus
ENSONIG00000002730	sf3b4	57	97.807	ENSECAG00000024737	SF3B4	56	95.359	Equus_caballus
ENSONIG00000002730	sf3b4	87	86.571	ENSELUG00000012876	sf3b4	67	94.776	Esox_lucius
ENSONIG00000002730	sf3b4	57	97.807	ENSFCAG00000010106	SF3B4	56	95.359	Felis_catus
ENSONIG00000002730	sf3b4	57	97.807	ENSFDAG00000009286	SF3B4	56	95.359	Fukomys_damarensis
ENSONIG00000002730	sf3b4	57	97.826	ENSGMOG00000002519	sf3b4	70	95.781	Gadus_morhua
ENSONIG00000002730	sf3b4	53	100.000	ENSGALG00000013352	SF3B4	57	96.203	Gallus_gallus
ENSONIG00000002730	sf3b4	66	94.361	ENSGAFG00000010181	sf3b4	68	94.361	Gambusia_affinis
ENSONIG00000002730	sf3b4	56	99.558	ENSGACG00000003819	sf3b4	60	96.624	Gasterosteus_aculeatus
ENSONIG00000002730	sf3b4	53	100.000	ENSGAGG00000025055	SF3B4	50	95.781	Gopherus_agassizii
ENSONIG00000002730	sf3b4	76	69.968	ENSGGOG00000038845	-	54	89.151	Gorilla_gorilla
ENSONIG00000002730	sf3b4	57	97.807	ENSGGOG00000004761	SF3B4	56	95.359	Gorilla_gorilla
ENSONIG00000002730	sf3b4	100	99.002	ENSHBUG00000002028	sf3b4	100	99.002	Haplochromis_burtoni
ENSONIG00000002730	sf3b4	57	97.807	ENSHGLG00000012360	SF3B4	56	95.359	Heterocephalus_glaber_female
ENSONIG00000002730	sf3b4	57	97.807	ENSHGLG00100008533	SF3B4	56	95.359	Heterocephalus_glaber_male
ENSONIG00000002730	sf3b4	57	97.357	ENSHCOG00000003014	sf3b4	59	95.359	Hippocampus_comes
ENSONIG00000002730	sf3b4	69	93.841	ENSIPUG00000012242	Sf3b4	67	95.149	Ictalurus_punctatus
ENSONIG00000002730	sf3b4	57	97.807	ENSSTOG00000000684	-	56	95.359	Ictidomys_tridecemlineatus
ENSONIG00000002730	sf3b4	95	58.524	ENSSTOG00000029627	-	52	72.609	Ictidomys_tridecemlineatus
ENSONIG00000002730	sf3b4	56	71.111	ENSJJAG00000022500	Sf3b4	58	68.750	Jaculus_jaculus
ENSONIG00000002730	sf3b4	94	89.153	ENSKMAG00000008154	sf3b4	88	90.462	Kryptolebias_marmoratus
ENSONIG00000002730	sf3b4	58	98.276	ENSLBEG00000026818	sf3b4	59	97.046	Labrus_bergylta
ENSONIG00000002730	sf3b4	60	94.167	ENSLACG00000004436	SF3B4	66	94.167	Latimeria_chalumnae
ENSONIG00000002730	sf3b4	60	96.667	ENSLOCG00000009048	sf3b4	57	96.667	Lepisosteus_oculatus
ENSONIG00000002730	sf3b4	57	97.807	ENSLAFG00000008531	SF3B4	56	95.359	Loxodonta_africana
ENSONIG00000002730	sf3b4	89	62.327	ENSMFAG00000039067	-	60	77.232	Macaca_fascicularis
ENSONIG00000002730	sf3b4	57	97.807	ENSMFAG00000042395	SF3B4	56	95.359	Macaca_fascicularis
ENSONIG00000002730	sf3b4	57	97.807	ENSMMUG00000007256	SF3B4	56	95.359	Macaca_mulatta
ENSONIG00000002730	sf3b4	89	61.773	ENSMNEG00000031526	-	60	76.786	Macaca_nemestrina
ENSONIG00000002730	sf3b4	57	97.807	ENSMNEG00000031839	SF3B4	56	95.359	Macaca_nemestrina
ENSONIG00000002730	sf3b4	57	97.807	ENSMLEG00000038667	SF3B4	56	95.359	Mandrillus_leucophaeus
ENSONIG00000002730	sf3b4	61	97.942	ENSMAMG00000014692	sf3b4	66	96.591	Mastacembelus_armatus
ENSONIG00000002730	sf3b4	100	99.002	ENSMZEG00005026741	sf3b4	100	99.002	Maylandia_zebra
ENSONIG00000002730	sf3b4	53	100.000	ENSMGAG00000000653	SF3B4	57	96.203	Meleagris_gallopavo
ENSONIG00000002730	sf3b4	57	97.807	ENSMAUG00000015266	Sf3b4	56	95.359	Mesocricetus_auratus
ENSONIG00000002730	sf3b4	57	97.807	ENSMICG00000044961	SF3B4	56	95.359	Microcebus_murinus
ENSONIG00000002730	sf3b4	51	98.049	ENSMOCG00000014155	-	56	92.982	Microtus_ochrogaster
ENSONIG00000002730	sf3b4	57	97.807	ENSMOCG00000013658	-	56	95.359	Microtus_ochrogaster
ENSONIG00000002730	sf3b4	57	98.261	ENSMMOG00000018032	sf3b4	60	96.624	Mola_mola
ENSONIG00000002730	sf3b4	57	97.807	ENSMODG00000018767	SF3B4	56	95.359	Monodelphis_domestica
ENSONIG00000002730	sf3b4	66	95.833	ENSMALG00000006174	sf3b4	66	95.833	Monopterus_albus
ENSONIG00000002730	sf3b4	57	97.807	MGP_CAROLIEiJ_G0025365	Sf3b4	56	95.359	Mus_caroli
ENSONIG00000002730	sf3b4	57	97.807	ENSMUSG00000068856	Sf3b4	56	95.359	Mus_musculus
ENSONIG00000002730	sf3b4	57	97.807	MGP_PahariEiJ_G0026809	Sf3b4	56	95.359	Mus_pahari
ENSONIG00000002730	sf3b4	57	97.807	MGP_SPRETEiJ_G0026309	Sf3b4	56	95.359	Mus_spretus
ENSONIG00000002730	sf3b4	57	97.807	ENSMPUG00000005563	SF3B4	56	95.359	Mustela_putorius_furo
ENSONIG00000002730	sf3b4	57	97.807	ENSMLUG00000010789	SF3B4	56	95.359	Myotis_lucifugus
ENSONIG00000002730	sf3b4	57	97.807	ENSNGAG00000016337	Sf3b4	56	95.359	Nannospalax_galili
ENSONIG00000002730	sf3b4	100	98.753	ENSNBRG00000013865	sf3b4	100	98.753	Neolamprologus_brichardi
ENSONIG00000002730	sf3b4	90	69.086	ENSNLEG00000000537	-	60	86.076	Nomascus_leucogenys
ENSONIG00000002730	sf3b4	57	93.421	ENSOPRG00000010808	SF3B4	56	91.139	Ochotona_princeps
ENSONIG00000002730	sf3b4	91	59.259	ENSODEG00000008916	-	60	70.464	Octodon_degus
ENSONIG00000002730	sf3b4	76	67.823	ENSODEG00000003597	-	59	79.253	Octodon_degus
ENSONIG00000002730	sf3b4	65	71.642	ENSOANG00000004768	-	50	81.944	Ornithorhynchus_anatinus
ENSONIG00000002730	sf3b4	57	97.807	ENSOCUG00000004614	SF3B4	56	95.359	Oryctolagus_cuniculus
ENSONIG00000002730	sf3b4	74	90.698	ENSORLG00000003062	sf3b4	61	97.890	Oryzias_latipes
ENSONIG00000002730	sf3b4	74	90.698	ENSORLG00020000687	sf3b4	59	97.890	Oryzias_latipes_hni
ENSONIG00000002730	sf3b4	74	90.698	ENSORLG00015010989	sf3b4	59	97.890	Oryzias_latipes_hsok
ENSONIG00000002730	sf3b4	58	98.276	ENSOMEG00000013694	sf3b4	60	97.468	Oryzias_melastigma
ENSONIG00000002730	sf3b4	57	97.807	ENSOGAG00000006265	SF3B4	56	95.359	Otolemur_garnettii
ENSONIG00000002730	sf3b4	71	72.297	ENSOARG00000007368	-	55	80.973	Ovis_aries
ENSONIG00000002730	sf3b4	57	97.807	ENSOARG00000020718	-	56	95.359	Ovis_aries
ENSONIG00000002730	sf3b4	76	74.441	ENSPPAG00000030024	-	58	85.232	Pan_paniscus
ENSONIG00000002730	sf3b4	57	97.807	ENSPPAG00000040904	SF3B4	56	95.359	Pan_paniscus
ENSONIG00000002730	sf3b4	57	97.807	ENSPPRG00000007384	SF3B4	56	95.359	Panthera_pardus
ENSONIG00000002730	sf3b4	57	97.807	ENSPTIG00000014530	SF3B4	56	95.359	Panthera_tigris_altaica
ENSONIG00000002730	sf3b4	57	97.807	ENSPTRG00000001243	SF3B4	56	95.359	Pan_troglodytes
ENSONIG00000002730	sf3b4	76	75.000	ENSPTRG00000049727	-	59	85.654	Pan_troglodytes
ENSONIG00000002730	sf3b4	57	97.807	ENSPANG00000005126	SF3B4	56	95.359	Papio_anubis
ENSONIG00000002730	sf3b4	61	97.119	ENSPKIG00000020669	sf3b4	71	94.403	Paramormyrops_kingsleyae
ENSONIG00000002730	sf3b4	66	77.652	ENSPSIG00000009565	SF3B4	71	94.845	Pelodiscus_sinensis
ENSONIG00000002730	sf3b4	57	97.807	ENSPEMG00000017568	Sf3b4	56	95.359	Peromyscus_maniculatus_bairdii
ENSONIG00000002730	sf3b4	53	95.305	ENSPMAG00000007842	-	55	90.295	Petromyzon_marinus
ENSONIG00000002730	sf3b4	57	97.807	ENSPCIG00000008765	SF3B4	56	95.359	Phascolarctos_cinereus
ENSONIG00000002730	sf3b4	66	95.865	ENSPFOG00000005754	sf3b4	68	95.865	Poecilia_formosa
ENSONIG00000002730	sf3b4	66	95.865	ENSPLAG00000001401	sf3b4	73	95.865	Poecilia_latipinna
ENSONIG00000002730	sf3b4	66	95.489	ENSPREG00000011076	sf3b4	66	95.489	Poecilia_reticulata
ENSONIG00000002730	sf3b4	52	96.635	ENSPCAG00000000392	SF3B4	50	96.635	Procavia_capensis
ENSONIG00000002730	sf3b4	57	97.807	ENSPCOG00000015399	SF3B4	56	95.359	Propithecus_coquereli
ENSONIG00000002730	sf3b4	57	97.807	ENSPVAG00000014171	SF3B4	56	95.359	Pteropus_vampyrus
ENSONIG00000002730	sf3b4	100	99.002	ENSPNYG00000012700	sf3b4	100	99.002	Pundamilia_nyererei
ENSONIG00000002730	sf3b4	61	97.531	ENSPNAG00000000686	sf3b4	68	94.776	Pygocentrus_nattereri
ENSONIG00000002730	sf3b4	57	97.807	ENSRNOG00000021181	Sf3b4	56	95.359	Rattus_norvegicus
ENSONIG00000002730	sf3b4	57	97.807	ENSRBIG00000043392	SF3B4	56	95.359	Rhinopithecus_bieti
ENSONIG00000002730	sf3b4	57	97.807	ENSRROG00000029366	SF3B4	56	95.359	Rhinopithecus_roxellana
ENSONIG00000002730	sf3b4	92	58.115	ENSRROG00000028213	-	58	72.489	Rhinopithecus_roxellana
ENSONIG00000002730	sf3b4	97	57.037	ENSSBOG00000025174	-	51	73.840	Saimiri_boliviensis_boliviensis
ENSONIG00000002730	sf3b4	57	97.368	ENSSBOG00000012310	-	56	94.937	Saimiri_boliviensis_boliviensis
ENSONIG00000002730	sf3b4	57	92.982	ENSSHAG00000004043	SF3B4	55	90.717	Sarcophilus_harrisii
ENSONIG00000002730	sf3b4	61	97.531	ENSSFOG00015008864	sf3b4	66	94.776	Scleropages_formosus
ENSONIG00000002730	sf3b4	99	89.356	ENSSMAG00000006837	sf3b4	67	95.489	Scophthalmus_maximus
ENSONIG00000002730	sf3b4	66	95.865	ENSSDUG00000012064	sf3b4	67	95.522	Seriola_dumerili
ENSONIG00000002730	sf3b4	66	95.489	ENSSLDG00000014226	sf3b4	66	95.489	Seriola_lalandi_dorsalis
ENSONIG00000002730	sf3b4	61	97.119	ENSSPAG00000019219	sf3b4	67	94.776	Stegastes_partitus
ENSONIG00000002730	sf3b4	79	55.312	ENSSSCG00000039440	-	58	62.025	Sus_scrofa
ENSONIG00000002730	sf3b4	76	78.997	ENSSSCG00000006665	-	56	95.359	Sus_scrofa
ENSONIG00000002730	sf3b4	60	94.628	ENSTGUG00000004470	SF3B4	93	95.781	Taeniopygia_guttata
ENSONIG00000002730	sf3b4	79	87.382	ENSTRUG00000004516	sf3b4	60	96.203	Takifugu_rubripes
ENSONIG00000002730	sf3b4	57	98.696	ENSTNIG00000009156	sf3b4	61	97.046	Tetraodon_nigroviridis
ENSONIG00000002730	sf3b4	57	97.807	ENSTTRG00000005217	SF3B4	56	95.359	Tursiops_truncatus
ENSONIG00000002730	sf3b4	57	97.807	ENSUAMG00000022468	SF3B4	56	95.359	Ursus_americanus
ENSONIG00000002730	sf3b4	57	97.807	ENSUMAG00000003802	SF3B4	56	95.359	Ursus_maritimus
ENSONIG00000002730	sf3b4	54	97.685	ENSVPAG00000008152	SF3B4	55	95.111	Vicugna_pacos
ENSONIG00000002730	sf3b4	57	97.807	ENSVVUG00000007732	-	61	95.359	Vulpes_vulpes
ENSONIG00000002730	sf3b4	76	79.605	ENSXETG00000011038	sf3b4	59	94.595	Xenopus_tropicalis
ENSONIG00000002730	sf3b4	66	94.737	ENSXCOG00000019895	sf3b4	68	94.737	Xiphophorus_couchianus
ENSONIG00000002730	sf3b4	66	94.737	ENSXMAG00000003772	sf3b4	68	94.737	Xiphophorus_maculatus