EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSONIG00000003168 (Gene tree)
Gene ID: 100697289
Gene Symbol: ptcd1
Alias: -
Full Name: pentatricopeptide repeat domain 1
Gene Type: protein_coding
Species: Oreochromis_niloticus
Status: putative
Strand: Plus strand
Length: 4230 bases
Position: chrGL831326.1:137099-141328
Accession: ZDB-GENE-030131-6146
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSONIP00000003971	PPR	PF01535.20	1.7e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSONIT00000003972	-	1794	-	ENSONIP00000003971	598 (aa)	-	I3J531

Gene Model

Click here to download ENSONIG00000003168's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSONIG00000003168's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSONIG00000003168	ptcd1	95	46.791	ENSG00000106246	PTCD1	83	46.880	Homo_sapiens
ENSONIG00000003168	ptcd1	95	46.791	ENSG00000248919	ATP5MF-PTCD1	78	46.880	Homo_sapiens
ENSONIG00000003168	ptcd1	90	69.287	ENSAPOG00000010679	ptcd1	85	69.287	Acanthochromis_polyacanthus
ENSONIG00000003168	ptcd1	95	50.592	ENSAMEG00000006224	-	77	50.592	Ailuropoda_melanoleuca
ENSONIG00000003168	ptcd1	96	82.118	ENSACIG00000017861	ptcd1	85	82.118	Amphilophus_citrinellus
ENSONIG00000003168	ptcd1	99	70.266	ENSAOCG00000020741	-	84	70.266	Amphiprion_ocellaris
ENSONIG00000003168	ptcd1	90	70.932	ENSAOCG00000022617	ptcd1	82	70.932	Amphiprion_ocellaris
ENSONIG00000003168	ptcd1	99	70.266	ENSAPEG00000022632	ptcd1	84	70.266	Amphiprion_percula
ENSONIG00000003168	ptcd1	100	72.259	ENSATEG00000007016	ptcd1	85	72.259	Anabas_testudineus
ENSONIG00000003168	ptcd1	94	48.644	ENSAPLG00000006862	-	90	48.644	Anas_platyrhynchos
ENSONIG00000003168	ptcd1	94	48.148	ENSACAG00000012871	-	77	48.148	Anolis_carolinensis
ENSONIG00000003168	ptcd1	95	47.395	ENSANAG00000035790	-	86	47.483	Aotus_nancymaae
ENSONIG00000003168	ptcd1	100	92.154	ENSACLG00000002824	ptcd1	85	92.154	Astatotilapia_calliptera
ENSONIG00000003168	ptcd1	95	49.109	ENSAMXG00000037292	ptcd1	85	49.271	Astyanax_mexicanus
ENSONIG00000003168	ptcd1	99	46.602	ENSBTAG00000020440	-	75	46.926	Bos_taurus
ENSONIG00000003168	ptcd1	95	47.716	ENSCJAG00000015815	-	84	47.804	Callithrix_jacchus
ENSONIG00000003168	ptcd1	95	49.406	ENSCAFG00000015055	-	77	49.406	Canis_familiaris
ENSONIG00000003168	ptcd1	95	49.406	ENSCAFG00020014480	-	77	49.406	Canis_lupus_dingo
ENSONIG00000003168	ptcd1	99	48.455	ENSCHIG00000027000	-	86	48.455	Capra_hircus
ENSONIG00000003168	ptcd1	99	46.624	ENSTSYG00000029495	-	87	46.850	Carlito_syrichta
ENSONIG00000003168	ptcd1	95	47.218	ENSCAPG00000014660	-	89	47.306	Cavia_aperea
ENSONIG00000003168	ptcd1	95	48.229	ENSCPOG00000001780	-	83	48.316	Cavia_porcellus
ENSONIG00000003168	ptcd1	95	47.555	ENSCCAG00000034025	-	84	47.643	Cebus_capucinus
ENSONIG00000003168	ptcd1	95	47.297	ENSCATG00000040859	-	83	47.386	Cercocebus_atys
ENSONIG00000003168	ptcd1	95	47.906	ENSCLAG00000006354	-	87	46.880	Chinchilla_lanigera
ENSONIG00000003168	ptcd1	90	47.679	ENSCSAG00000017794	-	82	47.772	Chlorocebus_sabaeus
ENSONIG00000003168	ptcd1	97	45.367	ENSCPBG00000020866	-	84	45.367	Chrysemys_picta_bellii
ENSONIG00000003168	ptcd1	95	46.880	ENSCANG00000023441	-	83	47.723	Colobus_angolensis_palliatus
ENSONIG00000003168	ptcd1	97	47.517	ENSCGRG00001023686	Ptcd1	85	48.013	Cricetulus_griseus_chok1gshd
ENSONIG00000003168	ptcd1	97	47.517	ENSCGRG00000015031	Ptcd1	84	48.013	Cricetulus_griseus_crigri
ENSONIG00000003168	ptcd1	100	60.899	ENSCSEG00000002378	ptcd1	84	61.065	Cynoglossus_semilaevis
ENSONIG00000003168	ptcd1	96	71.007	ENSCVAG00000003621	ptcd1	87	71.007	Cyprinodon_variegatus
ENSONIG00000003168	ptcd1	100	71.429	ENSCVAG00000015826	ptcd1	86	71.429	Cyprinodon_variegatus
ENSONIG00000003168	ptcd1	97	49.753	ENSDARG00000076176	ptcd1	86	49.753	Danio_rerio
ENSONIG00000003168	ptcd1	95	47.547	ENSDNOG00000009957	-	83	47.871	Dasypus_novemcinctus
ENSONIG00000003168	ptcd1	95	47.716	ENSDORG00000000740	Ptcd1	85	47.804	Dipodomys_ordii
ENSONIG00000003168	ptcd1	94	38.413	ENSEBUG00000014515	ptcd1	94	37.814	Eptatretus_burgeri
ENSONIG00000003168	ptcd1	95	48.167	ENSEASG00005002480	-	83	48.586	Equus_asinus_asinus
ENSONIG00000003168	ptcd1	95	48.333	ENSECAG00000016617	-	83	48.918	Equus_caballus
ENSONIG00000003168	ptcd1	95	56.860	ENSELUG00000016517	ptcd1	81	56.860	Esox_lucius
ENSONIG00000003168	ptcd1	99	46.935	ENSFCAG00000015069	-	86	47.258	Felis_catus
ENSONIG00000003168	ptcd1	99	45.095	ENSFALG00000013803	-	87	45.253	Ficedula_albicollis
ENSONIG00000003168	ptcd1	94	47.555	ENSFDAG00000006393	-	83	47.731	Fukomys_damarensis
ENSONIG00000003168	ptcd1	88	71.161	ENSFHEG00000012491	ptcd1	93	71.161	Fundulus_heteroclitus
ENSONIG00000003168	ptcd1	99	60.531	ENSGMOG00000007639	ptcd1	96	60.531	Gadus_morhua
ENSONIG00000003168	ptcd1	94	45.923	ENSGALG00000004711	-	83	46.256	Gallus_gallus
ENSONIG00000003168	ptcd1	100	67.869	ENSGAFG00000013175	ptcd1	87	68.543	Gambusia_affinis
ENSONIG00000003168	ptcd1	99	68.771	ENSGACG00000016607	ptcd1	93	68.771	Gasterosteus_aculeatus
ENSONIG00000003168	ptcd1	91	45.775	ENSGAGG00000021832	-	85	44.932	Gopherus_agassizii
ENSONIG00000003168	ptcd1	99	44.984	ENSGGOG00000015123	-	83	46.374	Gorilla_gorilla
ENSONIG00000003168	ptcd1	100	91.987	ENSHBUG00000018275	ptcd1	85	91.987	Haplochromis_burtoni
ENSONIG00000003168	ptcd1	97	46.470	ENSHGLG00000017621	-	85	46.481	Heterocephalus_glaber_female
ENSONIG00000003168	ptcd1	97	46.470	ENSHGLG00100007218	-	85	46.481	Heterocephalus_glaber_male
ENSONIG00000003168	ptcd1	98	58.545	ENSHCOG00000010784	ptcd1	85	59.222	Hippocampus_comes
ENSONIG00000003168	ptcd1	99	47.573	ENSSTOG00000001682	-	86	47.573	Ictidomys_tridecemlineatus
ENSONIG00000003168	ptcd1	95	48.658	ENSJJAG00000000319	Ptcd1	85	49.410	Jaculus_jaculus
ENSONIG00000003168	ptcd1	100	69.333	ENSKMAG00000008708	ptcd1	85	69.333	Kryptolebias_marmoratus
ENSONIG00000003168	ptcd1	99	68.197	ENSLBEG00000008061	ptcd1	84	68.689	Labrus_bergylta
ENSONIG00000003168	ptcd1	94	48.311	ENSLACG00000011172	ptcd1	82	48.311	Latimeria_chalumnae
ENSONIG00000003168	ptcd1	98	49.841	ENSLOCG00000004833	ptcd1	94	49.588	Lepisosteus_oculatus
ENSONIG00000003168	ptcd1	95	47.059	ENSLAFG00000002588	-	83	47.059	Loxodonta_africana
ENSONIG00000003168	ptcd1	95	47.297	ENSMFAG00000041324	-	83	47.386	Macaca_fascicularis
ENSONIG00000003168	ptcd1	95	47.297	ENSMMUG00000030408	-	83	47.386	Macaca_mulatta
ENSONIG00000003168	ptcd1	95	47.466	ENSMNEG00000043786	-	83	47.555	Macaca_nemestrina
ENSONIG00000003168	ptcd1	95	35.103	ENSMLEG00000031179	-	81	41.480	Mandrillus_leucophaeus
ENSONIG00000003168	ptcd1	99	69.435	ENSMAMG00000007623	ptcd1	83	69.435	Mastacembelus_armatus
ENSONIG00000003168	ptcd1	100	91.987	ENSMZEG00005012722	ptcd1	85	91.987	Maylandia_zebra
ENSONIG00000003168	ptcd1	98	46.527	ENSMGAG00000004211	-	80	46.850	Meleagris_gallopavo
ENSONIG00000003168	ptcd1	99	45.203	ENSMICG00000017428	-	87	45.543	Microcebus_murinus
ENSONIG00000003168	ptcd1	100	69.722	ENSMMOG00000020243	ptcd1	90	70.169	Mola_mola
ENSONIG00000003168	ptcd1	99	45.126	ENSMODG00000001350	-	85	45.126	Monodelphis_domestica
ENSONIG00000003168	ptcd1	99	72.277	ENSMALG00000018442	ptcd1	84	72.277	Monopterus_albus
ENSONIG00000003168	ptcd1	99	46.254	MGP_CAROLIEiJ_G0028011	Ptcd1	87	47.068	Mus_caroli
ENSONIG00000003168	ptcd1	99	47.249	ENSMUSG00000029624	Ptcd1	87	47.735	Mus_musculus
ENSONIG00000003168	ptcd1	99	46.829	MGP_PahariEiJ_G0024580	Ptcd1	88	47.317	Mus_pahari
ENSONIG00000003168	ptcd1	99	46.602	MGP_SPRETEiJ_G0029012	Ptcd1	87	47.411	Mus_spretus
ENSONIG00000003168	ptcd1	99	46.656	ENSMPUG00000016518	-	87	47.145	Mustela_putorius_furo
ENSONIG00000003168	ptcd1	95	48.576	ENSMLUG00000010994	-	78	48.997	Myotis_lucifugus
ENSONIG00000003168	ptcd1	100	89.816	ENSNBRG00000010079	ptcd1	84	91.638	Neolamprologus_brichardi
ENSONIG00000003168	ptcd1	83	46.272	ENSNLEG00000011060	-	87	46.272	Nomascus_leucogenys
ENSONIG00000003168	ptcd1	95	45.671	ENSMEUG00000006930	-	84	45.671	Notamacropus_eugenii
ENSONIG00000003168	ptcd1	82	59.483	ENSOPRG00000013647	-	73	62.069	Ochotona_princeps
ENSONIG00000003168	ptcd1	90	45.936	ENSOANG00000007728	-	73	45.583	Ornithorhynchus_anatinus
ENSONIG00000003168	ptcd1	99	46.314	ENSOCUG00000010584	-	86	46.326	Oryctolagus_cuniculus
ENSONIG00000003168	ptcd1	99	67.893	ENSORLG00000009275	ptcd1	87	67.893	Oryzias_latipes
ENSONIG00000003168	ptcd1	99	68.844	ENSORLG00020000988	ptcd1	87	68.844	Oryzias_latipes_hni
ENSONIG00000003168	ptcd1	99	67.780	ENSORLG00015010557	ptcd1	87	67.780	Oryzias_latipes_hsok
ENSONIG00000003168	ptcd1	99	69.463	ENSOMEG00000020627	ptcd1	89	69.463	Oryzias_melastigma
ENSONIG00000003168	ptcd1	97	45.888	ENSOGAG00000010877	-	86	45.977	Otolemur_garnettii
ENSONIG00000003168	ptcd1	99	44.918	ENSOARG00000018676	-	86	44.918	Ovis_aries
ENSONIG00000003168	ptcd1	95	46.284	ENSPPAG00000036024	-	83	46.374	Pan_paniscus
ENSONIG00000003168	ptcd1	95	49.069	ENSPPRG00000003478	-	84	49.069	Panthera_pardus
ENSONIG00000003168	ptcd1	99	45.307	ENSPTRG00000019452	-	87	45.396	Pan_troglodytes
ENSONIG00000003168	ptcd1	95	47.466	ENSPANG00000016730	-	83	47.555	Papio_anubis
ENSONIG00000003168	ptcd1	94	49.830	ENSPKIG00000014215	ptcd1	84	50.257	Paramormyrops_kingsleyae
ENSONIG00000003168	ptcd1	94	46.678	ENSPSIG00000011184	-	98	46.848	Pelodiscus_sinensis
ENSONIG00000003168	ptcd1	82	41.524	ENSPMAG00000009667	ptcd1	100	41.524	Petromyzon_marinus
ENSONIG00000003168	ptcd1	99	44.953	ENSPCIG00000024778	-	85	44.953	Phascolarctos_cinereus
ENSONIG00000003168	ptcd1	100	67.377	ENSPFOG00000004458	ptcd1	86	67.377	Poecilia_formosa
ENSONIG00000003168	ptcd1	100	67.710	ENSPLAG00000011051	ptcd1	86	67.875	Poecilia_latipinna
ENSONIG00000003168	ptcd1	100	67.377	ENSPMEG00000020547	ptcd1	86	67.377	Poecilia_mexicana
ENSONIG00000003168	ptcd1	100	67.384	ENSPREG00000000059	ptcd1	86	67.881	Poecilia_reticulata
ENSONIG00000003168	ptcd1	95	46.555	ENSPPYG00000017377	-	88	46.555	Pongo_abelii
ENSONIG00000003168	ptcd1	83	59.829	ENSPCAG00000001852	-	80	59.829	Procavia_capensis
ENSONIG00000003168	ptcd1	97	46.952	ENSPCOG00000018596	-	85	47.273	Propithecus_coquereli
ENSONIG00000003168	ptcd1	61	59.470	ENSPVAG00000007529	-	55	59.470	Pteropus_vampyrus
ENSONIG00000003168	ptcd1	100	91.653	ENSPNYG00000019993	ptcd1	85	91.653	Pundamilia_nyererei
ENSONIG00000003168	ptcd1	95	50.676	ENSPNAG00000014931	ptcd1	86	51.010	Pygocentrus_nattereri
ENSONIG00000003168	ptcd1	99	46.078	ENSRNOG00000000987	Ptcd1	89	46.656	Rattus_norvegicus
ENSONIG00000003168	ptcd1	95	47.555	ENSRBIG00000043393	-	83	48.398	Rhinopithecus_bieti
ENSONIG00000003168	ptcd1	95	47.651	ENSRROG00000036420	-	83	48.490	Rhinopithecus_roxellana
ENSONIG00000003168	ptcd1	95	47.466	ENSSBOG00000024114	-	84	47.555	Saimiri_boliviensis_boliviensis
ENSONIG00000003168	ptcd1	99	44.532	ENSSHAG00000011376	-	93	44.444	Sarcophilus_harrisii
ENSONIG00000003168	ptcd1	95	52.326	ENSSFOG00015007909	ptcd1	80	52.492	Scleropages_formosus
ENSONIG00000003168	ptcd1	100	65.898	ENSSMAG00000000218	ptcd1	96	65.898	Scophthalmus_maximus
ENSONIG00000003168	ptcd1	99	72.047	ENSSDUG00000015671	ptcd1	87	72.047	Seriola_dumerili
ENSONIG00000003168	ptcd1	98	70.389	ENSSLDG00000014261	ptcd1	83	73.137	Seriola_lalandi_dorsalis
ENSONIG00000003168	ptcd1	99	45.369	ENSSPUG00000003540	-	85	45.369	Sphenodon_punctatus
ENSONIG00000003168	ptcd1	100	73.290	ENSSPAG00000011049	ptcd1	85	73.290	Stegastes_partitus
ENSONIG00000003168	ptcd1	95	49.492	ENSSSCG00000007622	-	88	49.831	Sus_scrofa
ENSONIG00000003168	ptcd1	94	46.644	ENSTGUG00000007563	-	94	47.170	Taeniopygia_guttata
ENSONIG00000003168	ptcd1	99	67.213	ENSTRUG00000013471	ptcd1	83	67.320	Takifugu_rubripes
ENSONIG00000003168	ptcd1	99	64.860	ENSTNIG00000008271	ptcd1	87	64.860	Tetraodon_nigroviridis
ENSONIG00000003168	ptcd1	95	47.236	ENSTBEG00000011021	-	84	47.236	Tupaia_belangeri
ENSONIG00000003168	ptcd1	95	48.136	ENSTTRG00000003006	-	83	48.136	Tursiops_truncatus
ENSONIG00000003168	ptcd1	95	48.480	ENSUAMG00000008049	-	83	48.639	Ursus_americanus
ENSONIG00000003168	ptcd1	95	49.492	ENSVVUG00000008836	-	83	49.492	Vulpes_vulpes
ENSONIG00000003168	ptcd1	95	44.925	ENSXETG00000009891	ptcd1	84	44.925	Xenopus_tropicalis
ENSONIG00000003168	ptcd1	100	68.801	ENSXMAG00000015540	ptcd1	86	68.966	Xiphophorus_maculatus