EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSONIG00000004242 (Gene tree)
Gene ID: -
Gene Symbol: srrt
Alias: -
Full Name: serrate%2C RNA effector molecule
Gene Type: protein_coding
Species: Oreochromis_niloticus
Status: putative
Strand: Minus strand
Length: 41640 bases
Position: chrGL831356.1:263137-304776
Accession: 100693566
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSONIP00000005340	ARS2	PF04959.13	1.6e-89	1	1
ENSONIP00000005341	ARS2	PF04959.13	5.9e-88	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSONIT00000005344	-	2908	XM_005472031	ENSONIP00000005340	910 (aa)	XP_005472088	I3J900
ENSONIT00000005345	-	2676	-	ENSONIP00000005341	891 (aa)	-	I3J901

Gene Model

Click here to download ENSONIG00000004242's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSONIG00000004242's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSONIG00000004242	srrt	52	65.690	ENSONIG00000016080	-	52	66.667

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSONIG00000004242	srrt	52	74.892	ENSG00000087087	SRRT	98	85.484	Homo_sapiens
ENSONIG00000004242	srrt	95	88.618	ENSAPOG00000002304	srrt	95	90.974	Acanthochromis_polyacanthus
ENSONIG00000004242	srrt	96	65.482	ENSAMEG00000014506	SRRT	51	76.044	Ailuropoda_melanoleuca
ENSONIG00000004242	srrt	85	97.899	ENSACIG00000015795	srrt	90	97.802	Amphilophus_citrinellus
ENSONIG00000004242	srrt	93	54.895	ENSAOCG00000009189	-	52	66.957	Amphiprion_ocellaris
ENSONIG00000004242	srrt	95	89.211	ENSAOCG00000009693	srrt	95	91.190	Amphiprion_ocellaris
ENSONIG00000004242	srrt	93	54.895	ENSAPEG00000020016	-	52	66.957	Amphiprion_percula
ENSONIG00000004242	srrt	95	88.979	ENSAPEG00000003646	srrt	95	92.143	Amphiprion_percula
ENSONIG00000004242	srrt	92	87.128	ENSATEG00000014425	srrt	88	92.088	Anabas_testudineus
ENSONIG00000004242	srrt	54	62.729	ENSATEG00000003652	-	85	65.665	Anabas_testudineus
ENSONIG00000004242	srrt	95	64.713	ENSACAG00000001014	SRRT	52	76.149	Anolis_carolinensis
ENSONIG00000004242	srrt	52	74.624	ENSANAG00000031718	SRRT	53	74.839	Aotus_nancymaae
ENSONIG00000004242	srrt	52	64.211	ENSACLG00000009423	-	52	65.435	Astatotilapia_calliptera
ENSONIG00000004242	srrt	100	95.439	ENSACLG00000013156	srrt	96	98.746	Astatotilapia_calliptera
ENSONIG00000004242	srrt	51	79.694	ENSAMXG00000016671	srrt	50	82.628	Astyanax_mexicanus
ENSONIG00000004242	srrt	52	74.194	ENSBTAG00000001134	SRRT	53	74.409	Bos_taurus
ENSONIG00000004242	srrt	67	42.857	WBGene00017085	E01A2.2	84	43.243	Caenorhabditis_elegans
ENSONIG00000004242	srrt	52	74.409	ENSCJAG00000014917	SRRT	53	74.624	Callithrix_jacchus
ENSONIG00000004242	srrt	96	66.084	ENSCAFG00000023538	SRRT	53	74.839	Canis_familiaris
ENSONIG00000004242	srrt	96	66.199	ENSCAFG00020013358	SRRT	52	76.380	Canis_lupus_dingo
ENSONIG00000004242	srrt	88	74.675	ENSCHIG00000010495	SRRT	85	74.892	Capra_hircus
ENSONIG00000004242	srrt	96	64.252	ENSTSYG00000036426	SRRT	56	75.325	Carlito_syrichta
ENSONIG00000004242	srrt	52	74.675	ENSCAPG00000013586	SRRT	89	70.675	Cavia_aperea
ENSONIG00000004242	srrt	52	74.034	ENSCPOG00000001739	SRRT	53	74.249	Cavia_porcellus
ENSONIG00000004242	srrt	52	74.624	ENSCCAG00000015877	SRRT	53	74.839	Cebus_capucinus
ENSONIG00000004242	srrt	52	74.675	ENSCATG00000036306	SRRT	53	74.892	Cercocebus_atys
ENSONIG00000004242	srrt	52	74.409	ENSCLAG00000007568	SRRT	89	71.092	Chinchilla_lanigera
ENSONIG00000004242	srrt	52	74.624	ENSCSAG00000017996	SRRT	53	74.839	Chlorocebus_sabaeus
ENSONIG00000004242	srrt	50	74.815	ENSCHOG00000007815	SRRT	63	72.727	Choloepus_hoffmanni
ENSONIG00000004242	srrt	69	74.561	ENSCPBG00000011553	SRRT	83	68.702	Chrysemys_picta_bellii
ENSONIG00000004242	srrt	100	40.575	ENSCING00000003506	-	54	50.622	Ciona_intestinalis
ENSONIG00000004242	srrt	100	40.276	ENSCSAVG00000008394	-	81	55.714	Ciona_savignyi
ENSONIG00000004242	srrt	52	74.892	ENSCANG00000034556	SRRT	53	75.108	Colobus_angolensis_palliatus
ENSONIG00000004242	srrt	96	65.385	ENSCGRG00001001594	Srrt	53	75.054	Cricetulus_griseus_chok1gshd
ENSONIG00000004242	srrt	91	81.046	ENSCGRG00000007292	Srrt	87	74.304	Cricetulus_griseus_crigri
ENSONIG00000004242	srrt	52	62.603	ENSCSEG00000005233	-	54	65.152	Cynoglossus_semilaevis
ENSONIG00000004242	srrt	98	75.478	ENSCSEG00000017878	srrt	95	78.749	Cynoglossus_semilaevis
ENSONIG00000004242	srrt	95	85.267	ENSCVAG00000019848	srrt	95	87.262	Cyprinodon_variegatus
ENSONIG00000004242	srrt	90	51.605	ENSCVAG00000017344	-	52	64.908	Cyprinodon_variegatus
ENSONIG00000004242	srrt	96	75.029	ENSDARG00000017762	srrt	95	75.939	Danio_rerio
ENSONIG00000004242	srrt	52	74.624	ENSDNOG00000003851	SRRT	53	74.839	Dasypus_novemcinctus
ENSONIG00000004242	srrt	52	74.145	ENSDORG00000005584	Srrt	89	71.706	Dipodomys_ordii
ENSONIG00000004242	srrt	88	52.137	FBgn0033062	Ars2	68	53.079	Drosophila_melanogaster
ENSONIG00000004242	srrt	74	72.449	ENSETEG00000016175	SRRT	71	75.325	Echinops_telfairi
ENSONIG00000004242	srrt	62	62.236	ENSEBUG00000008517	-	79	62.987	Eptatretus_burgeri
ENSONIG00000004242	srrt	52	74.624	ENSEASG00005016956	SRRT	53	74.839	Equus_asinus_asinus
ENSONIG00000004242	srrt	52	74.624	ENSECAG00000012292	SRRT	53	74.839	Equus_caballus
ENSONIG00000004242	srrt	81	77.083	ENSEEUG00000009117	SRRT	57	81.081	Erinaceus_europaeus
ENSONIG00000004242	srrt	93	58.576	ENSELUG00000021216	-	53	68.017	Esox_lucius
ENSONIG00000004242	srrt	96	72.788	ENSELUG00000006651	srrt	50	84.279	Esox_lucius
ENSONIG00000004242	srrt	52	74.839	ENSFCAG00000006855	SRRT	53	75.054	Felis_catus
ENSONIG00000004242	srrt	52	69.913	ENSFDAG00000021347	SRRT	88	68.433	Fukomys_damarensis
ENSONIG00000004242	srrt	52	57.380	ENSFHEG00000004105	-	93	57.203	Fundulus_heteroclitus
ENSONIG00000004242	srrt	75	92.116	ENSFHEG00000002756	srrt	88	92.116	Fundulus_heteroclitus
ENSONIG00000004242	srrt	96	73.812	ENSGMOG00000018619	srrt	51	80.879	Gadus_morhua
ENSONIG00000004242	srrt	66	65.734	ENSGMOG00000018694	-	86	63.537	Gadus_morhua
ENSONIG00000004242	srrt	52	62.156	ENSGAFG00000020383	-	54	63.203	Gambusia_affinis
ENSONIG00000004242	srrt	95	82.811	ENSGAFG00000005423	srrt	95	85.459	Gambusia_affinis
ENSONIG00000004242	srrt	93	54.206	ENSGACG00000001100	-	52	63.793	Gasterosteus_aculeatus
ENSONIG00000004242	srrt	96	83.641	ENSGACG00000020387	srrt	95	83.372	Gasterosteus_aculeatus
ENSONIG00000004242	srrt	52	74.892	ENSGGOG00000001508	SRRT	65	66.162	Gorilla_gorilla
ENSONIG00000004242	srrt	98	98.086	ENSHBUG00000002942	srrt	97	98.086	Haplochromis_burtoni
ENSONIG00000004242	srrt	96	65.349	ENSHGLG00000008344	Srrt	89	70.878	Heterocephalus_glaber_female
ENSONIG00000004242	srrt	92	65.661	ENSHGLG00100018857	Srrt	89	71.645	Heterocephalus_glaber_male
ENSONIG00000004242	srrt	93	53.550	ENSHCOG00000008904	-	89	63.053	Hippocampus_comes
ENSONIG00000004242	srrt	98	81.528	ENSHCOG00000005403	srrt	93	85.560	Hippocampus_comes
ENSONIG00000004242	srrt	93	72.268	ENSIPUG00000021150	srrt	51	82.237	Ictalurus_punctatus
ENSONIG00000004242	srrt	52	74.892	ENSSTOG00000013776	SRRT	53	75.108	Ictidomys_tridecemlineatus
ENSONIG00000004242	srrt	96	65.497	ENSJJAG00000010446	Srrt	89	72.294	Jaculus_jaculus
ENSONIG00000004242	srrt	52	63.599	ENSKMAG00000008468	-	53	64.632	Kryptolebias_marmoratus
ENSONIG00000004242	srrt	95	83.949	ENSKMAG00000013599	srrt	55	91.648	Kryptolebias_marmoratus
ENSONIG00000004242	srrt	98	80.660	ENSLBEG00000016308	srrt	86	91.558	Labrus_bergylta
ENSONIG00000004242	srrt	95	56.404	ENSLACG00000001089	SRRT	53	58.225	Latimeria_chalumnae
ENSONIG00000004242	srrt	78	83.861	ENSLOCG00000013658	srrt	74	83.861	Lepisosteus_oculatus
ENSONIG00000004242	srrt	52	74.839	ENSLAFG00000007725	SRRT	53	75.054	Loxodonta_africana
ENSONIG00000004242	srrt	52	74.892	ENSMFAG00000033745	SRRT	56	73.362	Macaca_fascicularis
ENSONIG00000004242	srrt	96	64.229	ENSMMUG00000021255	SRRT	53	74.839	Macaca_mulatta
ENSONIG00000004242	srrt	52	74.624	ENSMNEG00000041864	SRRT	53	74.839	Macaca_nemestrina
ENSONIG00000004242	srrt	52	74.892	ENSMLEG00000029479	SRRT	55	73.362	Mandrillus_leucophaeus
ENSONIG00000004242	srrt	52	64.842	ENSMAMG00000010681	-	52	66.450	Mastacembelus_armatus
ENSONIG00000004242	srrt	92	87.828	ENSMAMG00000014311	srrt	95	87.947	Mastacembelus_armatus
ENSONIG00000004242	srrt	52	64.421	ENSMZEG00005028002	-	52	65.652	Maylandia_zebra
ENSONIG00000004242	srrt	100	95.551	ENSMZEG00005016135	srrt	96	98.860	Maylandia_zebra
ENSONIG00000004242	srrt	52	74.194	ENSMAUG00000011386	Srrt	89	71.064	Mesocricetus_auratus
ENSONIG00000004242	srrt	52	74.624	ENSMICG00000009471	SRRT	55	73.150	Microcebus_murinus
ENSONIG00000004242	srrt	52	74.624	ENSMOCG00000001971	Srrt	89	72.043	Microtus_ochrogaster
ENSONIG00000004242	srrt	84	56.689	ENSMMOG00000011137	-	55	66.885	Mola_mola
ENSONIG00000004242	srrt	95	79.463	ENSMMOG00000016399	srrt	87	88.793	Mola_mola
ENSONIG00000004242	srrt	52	70.190	ENSMODG00000004862	SRRT	89	71.581	Monodelphis_domestica
ENSONIG00000004242	srrt	90	80.802	ENSMALG00000018604	srrt	86	87.473	Monopterus_albus
ENSONIG00000004242	srrt	56	50.403	ENSMALG00000005567	-	84	53.965	Monopterus_albus
ENSONIG00000004242	srrt	96	66.550	MGP_CAROLIEiJ_G0027870	Srrt	99	72.388	Mus_caroli
ENSONIG00000004242	srrt	96	66.550	ENSMUSG00000037364	Srrt	99	72.388	Mus_musculus
ENSONIG00000004242	srrt	96	66.433	MGP_PahariEiJ_G0024456	Srrt	99	72.388	Mus_pahari
ENSONIG00000004242	srrt	96	66.550	MGP_SPRETEiJ_G0028875	Srrt	99	72.388	Mus_spretus
ENSONIG00000004242	srrt	96	66.434	ENSMPUG00000015839	SRRT	53	74.839	Mustela_putorius_furo
ENSONIG00000004242	srrt	52	74.409	ENSMLUG00000009975	SRRT	53	74.624	Myotis_lucifugus
ENSONIG00000004242	srrt	96	65.967	ENSNGAG00000023715	Srrt	64	74.839	Nannospalax_galili
ENSONIG00000004242	srrt	100	93.556	ENSNBRG00000019100	srrt	100	96.587	Neolamprologus_brichardi
ENSONIG00000004242	srrt	76	75.446	ENSNLEG00000011987	SRRT	83	73.094	Nomascus_leucogenys
ENSONIG00000004242	srrt	96	55.324	ENSMEUG00000011941	SRRT	52	61.638	Notamacropus_eugenii
ENSONIG00000004242	srrt	61	77.273	ENSOPRG00000002502	-	67	77.273	Ochotona_princeps
ENSONIG00000004242	srrt	52	74.892	ENSODEG00000016856	SRRT	89	71.861	Octodon_degus
ENSONIG00000004242	srrt	98	83.655	ENSORLG00000008120	srrt	52	91.209	Oryzias_latipes
ENSONIG00000004242	srrt	98	83.655	ENSORLG00020003058	srrt	52	91.429	Oryzias_latipes_hni
ENSONIG00000004242	srrt	98	83.655	ENSORLG00015008062	srrt	52	91.429	Oryzias_latipes_hsok
ENSONIG00000004242	srrt	93	55.609	ENSOMEG00000006963	-	53	66.812	Oryzias_melastigma
ENSONIG00000004242	srrt	98	83.560	ENSOMEG00000003155	srrt	90	91.209	Oryzias_melastigma
ENSONIG00000004242	srrt	52	74.624	ENSOGAG00000017242	SRRT	53	74.839	Otolemur_garnettii
ENSONIG00000004242	srrt	52	74.459	ENSOARG00000015645	SRRT	53	74.675	Ovis_aries
ENSONIG00000004242	srrt	52	74.892	ENSPPAG00000041090	SRRT	53	75.108	Pan_paniscus
ENSONIG00000004242	srrt	52	75.108	ENSPPRG00000009557	SRRT	53	74.892	Panthera_pardus
ENSONIG00000004242	srrt	52	74.839	ENSPTIG00000014355	SRRT	53	75.054	Panthera_tigris_altaica
ENSONIG00000004242	srrt	52	74.892	ENSPTRG00000019511	SRRT	53	75.108	Pan_troglodytes
ENSONIG00000004242	srrt	52	73.150	ENSPANG00000020763	SRRT	54	73.362	Papio_anubis
ENSONIG00000004242	srrt	94	68.750	ENSPKIG00000022212	-	52	80.220	Paramormyrops_kingsleyae
ENSONIG00000004242	srrt	98	71.152	ENSPKIG00000005434	srrt	86	80.519	Paramormyrops_kingsleyae
ENSONIG00000004242	srrt	98	74.914	ENSPMGG00000002841	srrt	92	89.440	Periophthalmus_magnuspinnatus
ENSONIG00000004242	srrt	52	75.108	ENSPEMG00000010834	Srrt	89	71.861	Peromyscus_maniculatus_bairdii
ENSONIG00000004242	srrt	96	53.029	ENSPMAG00000009614	-	55	63.347	Petromyzon_marinus
ENSONIG00000004242	srrt	96	65.698	ENSPCIG00000000816	SRRT	53	73.019	Phascolarctos_cinereus
ENSONIG00000004242	srrt	52	62.076	ENSPFOG00000016554	-	54	63.067	Poecilia_formosa
ENSONIG00000004242	srrt	95	82.947	ENSPFOG00000005704	srrt	95	85.595	Poecilia_formosa
ENSONIG00000004242	srrt	95	82.319	ENSPLAG00000021992	srrt	95	82.921	Poecilia_latipinna
ENSONIG00000004242	srrt	95	82.715	ENSPMEG00000001182	srrt	95	85.357	Poecilia_mexicana
ENSONIG00000004242	srrt	95	82.831	ENSPREG00000022308	srrt	95	85.238	Poecilia_reticulata
ENSONIG00000004242	srrt	52	72.727	ENSPCAG00000001621	SRRT	53	72.939	Procavia_capensis
ENSONIG00000004242	srrt	52	74.892	ENSPCOG00000025751	SRRT	53	75.108	Propithecus_coquereli
ENSONIG00000004242	srrt	68	66.667	ENSPVAG00000000834	SRRT	88	66.882	Pteropus_vampyrus
ENSONIG00000004242	srrt	100	95.884	ENSPNYG00000018710	srrt	100	99.202	Pundamilia_nyererei
ENSONIG00000004242	srrt	90	88.679	ENSPNAG00000010629	srrt	94	59.542	Pygocentrus_nattereri
ENSONIG00000004242	srrt	52	64.946	ENSRNOG00000048277	AABR07035787.1	92	65.721	Rattus_norvegicus
ENSONIG00000004242	srrt	52	74.624	ENSRBIG00000035718	SRRT	67	67.742	Rhinopithecus_bieti
ENSONIG00000004242	srrt	52	74.624	ENSRROG00000030622	SRRT	67	67.742	Rhinopithecus_roxellana
ENSONIG00000004242	srrt	52	74.892	ENSSBOG00000033570	SRRT	53	75.108	Saimiri_boliviensis_boliviensis
ENSONIG00000004242	srrt	72	63.174	ENSSHAG00000007349	-	74	72.921	Sarcophilus_harrisii
ENSONIG00000004242	srrt	94	73.684	ENSSFOG00015017293	srrt	51	85.463	Scleropages_formosus
ENSONIG00000004242	srrt	92	88.186	ENSSMAG00000015342	srrt	93	93.187	Scophthalmus_maximus
ENSONIG00000004242	srrt	52	63.425	ENSSMAG00000018195	-	57	64.009	Scophthalmus_maximus
ENSONIG00000004242	srrt	92	90.703	ENSSDUG00000012049	srrt	91	91.061	Seriola_dumerili
ENSONIG00000004242	srrt	52	53.799	ENSSDUG00000002051	-	93	55.603	Seriola_dumerili
ENSONIG00000004242	srrt	80	92.123	ENSSLDG00000017477	srrt	86	92.527	Seriola_lalandi_dorsalis
ENSONIG00000004242	srrt	95	88.324	ENSSPAG00000005665	srrt	94	90.985	Stegastes_partitus
ENSONIG00000004242	srrt	52	57.051	ENSSPAG00000018943	-	93	57.826	Stegastes_partitus
ENSONIG00000004242	srrt	50	73.589	ENSSSCG00000024789	SRRT	54	73.815	Sus_scrofa
ENSONIG00000004242	srrt	90	52.883	ENSTRUG00000000023	-	51	61.327	Takifugu_rubripes
ENSONIG00000004242	srrt	98	80.521	ENSTRUG00000016075	srrt	53	88.121	Takifugu_rubripes
ENSONIG00000004242	srrt	75	72.700	ENSTNIG00000011779	srrt	73	87.420	Tetraodon_nigroviridis
ENSONIG00000004242	srrt	93	53.047	ENSTNIG00000003111	-	53	64.069	Tetraodon_nigroviridis
ENSONIG00000004242	srrt	58	77.119	ENSTBEG00000005212	SRRT	57	77.119	Tupaia_belangeri
ENSONIG00000004242	srrt	52	74.409	ENSTTRG00000011104	SRRT	53	74.624	Tursiops_truncatus
ENSONIG00000004242	srrt	96	66.199	ENSUAMG00000027997	SRRT	55	74.839	Ursus_americanus
ENSONIG00000004242	srrt	96	66.317	ENSUMAG00000011295	SRRT	53	74.839	Ursus_maritimus
ENSONIG00000004242	srrt	96	66.084	ENSVVUG00000023572	SRRT	53	74.839	Vulpes_vulpes
ENSONIG00000004242	srrt	72	80.337	ENSXETG00000025124	srrt	71	78.981	Xenopus_tropicalis
ENSONIG00000004242	srrt	54	51.346	ENSXCOG00000013105	-	91	53.261	Xiphophorus_couchianus
ENSONIG00000004242	srrt	93	51.127	ENSXMAG00000002090	-	54	63.853	Xiphophorus_maculatus
ENSONIG00000004242	srrt	98	84.354	ENSXMAG00000007627	srrt	95	85.221	Xiphophorus_maculatus