EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSONIG00000004611 (Gene tree)
Gene ID: 100710924
Gene Symbol: -
Alias: -
Full Name: poly(rC)-binding protein 3
Gene Type: protein_coding
Species: Oreochromis_niloticus
Status: putative
Strand: Plus strand
Length: 24518 bases
Position: chrGL831155.1:4476475-4500992
Accession: 100710924
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSONIP00000005804	KH_1	PF00013.29	9.8e-55	1	3
ENSONIP00000005804	KH_1	PF00013.29	9.8e-55	2	3
ENSONIP00000005804	KH_1	PF00013.29	9.8e-55	3	3
ENSONIP00000005805	KH_1	PF00013.29	1.7e-54	1	3
ENSONIP00000005805	KH_1	PF00013.29	1.7e-54	2	3
ENSONIP00000005805	KH_1	PF00013.29	1.7e-54	3	3
ENSONIP00000005804	KH_2	PF07650.17	1.4e-14	1	1
ENSONIP00000005805	KH_2	PF07650.17	2e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSONIT00000005809	-	1098	-	ENSONIP00000005805	365 (aa)	-	I3JAB5
ENSONIT00000005808	-	4485	-	ENSONIP00000005804	321 (aa)	XP_003443293	I3JAB4

Gene Model

Click here to download ENSONIG00000004611's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSONIG00000004611's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSONIG00000004611	-	93	34.532	ENSONIG00000009029	igf2bp2b	68	34.532
ENSONIG00000004611	-	97	78.778	ENSONIG00000017003	pcbp2	97	78.778
ENSONIG00000004611	-	77	52.857	ENSONIG00000007565	hnrpkl	55	52.000
ENSONIG00000004611	-	77	51.429	ENSONIG00000015002	hnrnpk	53	51.429
ENSONIG00000004611	-	94	67.869	ENSONIG00000018552	pcbp4	71	67.869
ENSONIG00000004611	-	94	30.657	ENSONIG00000006205	igf2bp1	59	30.657
ENSONIG00000004611	-	97	66.038	ENSONIG00000017378	-	74	66.038
ENSONIG00000004611	-	97	87.006	ENSONIG00000012122	-	98	87.006
ENSONIG00000004611	-	68	41.176	ENSONIG00000017713	khsrp	54	42.188
ENSONIG00000004611	-	97	78.302	ENSONIG00000005135	PCBP2	97	78.302
ENSONIG00000004611	-	93	40.845	ENSONIG00000015810	nova1	64	40.845
ENSONIG00000004611	-	90	39.062	ENSONIG00000002861	fubp3	75	39.062
ENSONIG00000004611	-	70	40.741	ENSONIG00000018381	fubp1	58	40.741
ENSONIG00000004611	-	67	39.706	ENSONIG00000002163	KHSRP	56	39.706
ENSONIG00000004611	-	69	39.437	ENSONIG00000007665	NOVA1	59	39.437
ENSONIG00000004611	-	96	75.641	ENSONIG00000010370	zgc:110045	76	75.641
ENSONIG00000004611	-	97	35.211	ENSONIG00000004506	igf2bp3	60	35.211

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSONIG00000004611	-	99	92.767	ENSAPOG00000020003	pcbp3	89	92.767	Acanthochromis_polyacanthus
ENSONIG00000004611	-	97	99.035	ENSAPOG00000016582	-	100	95.399	Acanthochromis_polyacanthus
ENSONIG00000004611	-	98	91.291	ENSAMEG00000001697	-	99	87.069	Ailuropoda_melanoleuca
ENSONIG00000004611	-	100	95.122	ENSACIG00000002739	-	100	95.122	Amphilophus_citrinellus
ENSONIG00000004611	-	99	86.006	ENSACIG00000010933	pcbp3	98	86.006	Amphilophus_citrinellus
ENSONIG00000004611	-	95	94.539	ENSAOCG00000007806	-	100	94.539	Amphiprion_ocellaris
ENSONIG00000004611	-	97	97.097	ENSAOCG00000008592	-	98	97.097	Amphiprion_ocellaris
ENSONIG00000004611	-	97	89.583	ENSAPEG00000008011	pcbp3	95	89.583	Amphiprion_percula
ENSONIG00000004611	-	100	97.196	ENSAPEG00000005209	-	100	97.196	Amphiprion_percula
ENSONIG00000004611	-	100	96.885	ENSATEG00000009833	-	100	96.885	Anabas_testudineus
ENSONIG00000004611	-	97	87.988	ENSATEG00000015787	-	100	87.988	Anabas_testudineus
ENSONIG00000004611	-	95	77.273	ENSAPLG00000008951	-	79	77.273	Anas_platyrhynchos
ENSONIG00000004611	-	98	92.683	ENSAPLG00000002975	-	98	92.683	Anas_platyrhynchos
ENSONIG00000004611	-	98	87.709	ENSACAG00000004607	-	99	87.709	Anolis_carolinensis
ENSONIG00000004611	-	99	83.284	ENSACAG00000009819	-	99	83.284	Anolis_carolinensis
ENSONIG00000004611	-	95	96.218	ENSANAG00000030702	-	100	96.218	Aotus_nancymaae
ENSONIG00000004611	-	99	87.826	ENSACLG00000011835	pcbp3	98	87.826	Astatotilapia_calliptera
ENSONIG00000004611	-	100	100.000	ENSACLG00000003801	-	100	100.000	Astatotilapia_calliptera
ENSONIG00000004611	-	97	92.258	ENSAMXG00000013588	-	100	92.258	Astyanax_mexicanus
ENSONIG00000004611	-	95	68.485	ENSAMXG00000001760	zgc:110045	72	68.485	Astyanax_mexicanus
ENSONIG00000004611	-	97	91.317	ENSAMXG00000003440	pcbp3	95	91.317	Astyanax_mexicanus
ENSONIG00000004611	-	90	96.507	ENSCAFG00020019472	-	81	96.507	Canis_lupus_dingo
ENSONIG00000004611	-	98	97.134	ENSCSAG00000007440	-	89	97.134	Chlorocebus_sabaeus
ENSONIG00000004611	-	95	97.368	ENSCPBG00000012151	-	99	91.317	Chrysemys_picta_bellii
ENSONIG00000004611	-	96	89.000	ENSCPBG00000000733	-	69	89.000	Chrysemys_picta_bellii
ENSONIG00000004611	-	100	78.674	ENSCSEG00000016984	-	100	78.674	Cynoglossus_semilaevis
ENSONIG00000004611	-	97	92.903	ENSCSEG00000000822	pcbp3	99	92.903	Cynoglossus_semilaevis
ENSONIG00000004611	-	100	98.442	ENSCVAG00000005262	-	100	98.442	Cyprinodon_variegatus
ENSONIG00000004611	-	97	89.286	ENSCVAG00000014482	pcbp3	95	89.286	Cyprinodon_variegatus
ENSONIG00000004611	-	100	92.151	ENSDARG00000054378	pcbp3	100	92.151	Danio_rerio
ENSONIG00000004611	-	98	83.121	ENSETEG00000015988	-	98	83.121	Echinops_telfairi
ENSONIG00000004611	-	92	71.255	ENSEBUG00000005495	pcbp3	74	71.255	Eptatretus_burgeri
ENSONIG00000004611	-	95	74.286	ENSEBUG00000016192	pcbp3	99	74.721	Eptatretus_burgeri
ENSONIG00000004611	-	98	81.388	ENSEBUG00000007485	-	92	82.192	Eptatretus_burgeri
ENSONIG00000004611	-	97	97.749	ENSELUG00000001560	-	99	85.440	Esox_lucius
ENSONIG00000004611	-	97	89.614	ENSELUG00000003521	pcbp3	98	88.365	Esox_lucius
ENSONIG00000004611	-	98	96.178	ENSFALG00000003949	-	98	96.178	Ficedula_albicollis
ENSONIG00000004611	-	95	77.557	ENSFALG00000004411	-	74	77.557	Ficedula_albicollis
ENSONIG00000004611	-	98	93.930	ENSFHEG00000016615	pcbp3	96	93.930	Fundulus_heteroclitus
ENSONIG00000004611	-	100	96.262	ENSFHEG00000006539	-	100	96.262	Fundulus_heteroclitus
ENSONIG00000004611	-	97	80.896	ENSGMOG00000011992	pcbp3	97	80.896	Gadus_morhua
ENSONIG00000004611	-	96	70.695	ENSGMOG00000008611	-	100	70.695	Gadus_morhua
ENSONIG00000004611	-	98	85.833	ENSGALG00000004394	-	98	88.587	Gallus_gallus
ENSONIG00000004611	-	97	82.143	ENSGALG00000013155	-	99	79.940	Gallus_gallus
ENSONIG00000004611	-	100	84.593	ENSGAFG00000011430	pcbp3	99	84.593	Gambusia_affinis
ENSONIG00000004611	-	97	98.392	ENSGAFG00000010274	-	95	98.392	Gambusia_affinis
ENSONIG00000004611	-	100	79.515	ENSGACG00000014955	-	100	79.515	Gasterosteus_aculeatus
ENSONIG00000004611	-	100	91.813	ENSGACG00000002266	-	100	91.813	Gasterosteus_aculeatus
ENSONIG00000004611	-	78	86.316	ENSGAGG00000006956	-	84	81.731	Gopherus_agassizii
ENSONIG00000004611	-	91	88.764	ENSGAGG00000000271	-	100	88.764	Gopherus_agassizii
ENSONIG00000004611	-	100	100.000	ENSHBUG00000021782	-	100	100.000	Haplochromis_burtoni
ENSONIG00000004611	-	97	93.871	ENSHBUG00000010697	pcbp3	98	93.871	Haplochromis_burtoni
ENSONIG00000004611	-	100	93.146	ENSHCOG00000006067	-	100	93.146	Hippocampus_comes
ENSONIG00000004611	-	97	89.552	ENSHCOG00000017868	pcbp3	95	89.552	Hippocampus_comes
ENSONIG00000004611	-	100	95.327	ENSIPUG00000006238	pcbp3	100	95.327	Ictalurus_punctatus
ENSONIG00000004611	-	97	89.583	ENSKMAG00000003046	pcbp3	95	89.583	Kryptolebias_marmoratus
ENSONIG00000004611	-	97	97.428	ENSKMAG00000018530	-	95	97.428	Kryptolebias_marmoratus
ENSONIG00000004611	-	99	93.082	ENSLBEG00000006201	pcbp3	98	93.082	Labrus_bergylta
ENSONIG00000004611	-	100	82.515	ENSLBEG00000006542	-	100	82.515	Labrus_bergylta
ENSONIG00000004611	-	95	83.429	ENSLACG00000010386	pcbp3	74	83.429	Latimeria_chalumnae
ENSONIG00000004611	-	96	77.337	ENSLACG00000010804	zgc:110045	74	77.337	Latimeria_chalumnae
ENSONIG00000004611	-	95	83.180	ENSLOCG00000005058	zgc:110045	80	83.180	Lepisosteus_oculatus
ENSONIG00000004611	-	98	91.617	ENSLOCG00000009369	pcbp3	99	91.617	Lepisosteus_oculatus
ENSONIG00000004611	-	100	95.639	ENSMAMG00000011620	-	100	95.639	Mastacembelus_armatus
ENSONIG00000004611	-	98	93.610	ENSMAMG00000022336	pcbp3	94	93.610	Mastacembelus_armatus
ENSONIG00000004611	-	99	86.006	ENSMZEG00005008993	pcbp3	98	86.826	Maylandia_zebra
ENSONIG00000004611	-	97	89.441	ENSMZEG00005014882	-	100	86.000	Maylandia_zebra
ENSONIG00000004611	-	95	77.557	ENSMGAG00000006794	-	74	77.557	Meleagris_gallopavo
ENSONIG00000004611	-	95	81.766	ENSMGAG00000001883	-	95	81.766	Meleagris_gallopavo
ENSONIG00000004611	-	100	95.950	ENSMMOG00000005216	-	100	95.950	Mola_mola
ENSONIG00000004611	-	97	93.269	ENSMMOG00000000730	pcbp3	88	93.269	Mola_mola
ENSONIG00000004611	-	74	82.028	ENSMODG00000027884	-	93	82.028	Monodelphis_domestica
ENSONIG00000004611	-	96	87.688	ENSMALG00000000691	pcbp3	95	87.688	Monopterus_albus
ENSONIG00000004611	-	98	85.030	ENSMPUG00000001779	-	90	85.030	Mustela_putorius_furo
ENSONIG00000004611	-	99	85.714	ENSNBRG00000016409	-	98	85.714	Neolamprologus_brichardi
ENSONIG00000004611	-	97	90.062	ENSNBRG00000016714	-	99	88.520	Neolamprologus_brichardi
ENSONIG00000004611	-	96	84.943	ENSOPRG00000003431	-	99	84.943	Ochotona_princeps
ENSONIG00000004611	-	98	96.178	ENSOCUG00000002696	-	89	96.178	Oryctolagus_cuniculus
ENSONIG00000004611	-	97	97.097	ENSORLG00000000059	pcbp3	100	97.097	Oryzias_latipes
ENSONIG00000004611	-	100	98.754	ENSORLG00000022739	-	100	98.754	Oryzias_latipes
ENSONIG00000004611	-	100	98.442	ENSORLG00020006124	-	100	98.442	Oryzias_latipes_hni
ENSONIG00000004611	-	97	97.097	ENSORLG00020012671	pcbp3	97	97.097	Oryzias_latipes_hni
ENSONIG00000004611	-	99	96.875	ENSORLG00015008051	-	98	96.875	Oryzias_latipes_hsok
ENSONIG00000004611	-	97	97.097	ENSORLG00015000429	pcbp3	97	97.097	Oryzias_latipes_hsok
ENSONIG00000004611	-	100	98.131	ENSOMEG00000020162	-	100	98.131	Oryzias_melastigma
ENSONIG00000004611	-	95	94.138	ENSOMEG00000020811	pcbp3	99	94.138	Oryzias_melastigma
ENSONIG00000004611	-	98	83.924	ENSOGAG00000008044	-	99	83.924	Otolemur_garnettii
ENSONIG00000004611	-	78	84.211	ENSPKIG00000020913	-	82	84.211	Paramormyrops_kingsleyae
ENSONIG00000004611	-	100	95.639	ENSPKIG00000019329	pcbp3	100	95.639	Paramormyrops_kingsleyae
ENSONIG00000004611	-	91	80.488	ENSPSIG00000008350	-	68	80.488	Pelodiscus_sinensis
ENSONIG00000004611	-	98	83.384	ENSPSIG00000014970	-	98	83.988	Pelodiscus_sinensis
ENSONIG00000004611	-	96	90.060	ENSPMGG00000022383	pcbp3	95	90.060	Periophthalmus_magnuspinnatus
ENSONIG00000004611	-	78	88.298	ENSPMAG00000004637	-	97	88.298	Petromyzon_marinus
ENSONIG00000004611	-	98	74.214	ENSPMAG00000004551	pcbp3	91	74.214	Petromyzon_marinus
ENSONIG00000004611	-	98	90.208	ENSPCIG00000028092	-	99	90.208	Phascolarctos_cinereus
ENSONIG00000004611	-	100	81.471	ENSPLAG00000011449	pcbp3	91	81.471	Poecilia_latipinna
ENSONIG00000004611	-	99	92.121	ENSPLAG00000004074	-	92	92.121	Poecilia_latipinna
ENSONIG00000004611	-	99	88.630	ENSPMEG00000006653	-	100	97.701	Poecilia_mexicana
ENSONIG00000004611	-	96	89.286	ENSPMEG00000021239	pcbp3	95	89.286	Poecilia_mexicana
ENSONIG00000004611	-	100	95.950	ENSPREG00000020585	-	100	95.950	Poecilia_reticulata
ENSONIG00000004611	-	97	92.308	ENSPREG00000015736	pcbp3	99	92.308	Poecilia_reticulata
ENSONIG00000004611	-	100	97.508	ENSPNYG00000013205	-	100	97.508	Pundamilia_nyererei
ENSONIG00000004611	-	97	94.194	ENSPNYG00000012326	pcbp3	95	94.194	Pundamilia_nyererei
ENSONIG00000004611	-	96	92.857	ENSPNAG00000008541	-	98	92.857	Pygocentrus_nattereri
ENSONIG00000004611	-	100	98.442	ENSPNAG00000015104	pcbp3	100	98.442	Pygocentrus_nattereri
ENSONIG00000004611	-	98	96.815	ENSRNOG00000001245	Pcbp3	98	96.815	Rattus_norvegicus
ENSONIG00000004611	-	98	85.583	ENSRBIG00000028177	-	99	78.226	Rhinopithecus_bieti
ENSONIG00000004611	-	98	90.719	ENSSHAG00000007890	-	99	90.719	Sarcophilus_harrisii
ENSONIG00000004611	-	97	89.222	ENSSFOG00015014706	pcbp3	95	89.222	Scleropages_formosus
ENSONIG00000004611	-	97	98.071	ENSSFOG00015010205	pcbp3	95	98.071	Scleropages_formosus
ENSONIG00000004611	-	94	85.430	ENSSFOG00015007118	-	93	85.430	Scleropages_formosus
ENSONIG00000004611	-	100	98.442	ENSSMAG00000003135	-	100	98.442	Scophthalmus_maximus
ENSONIG00000004611	-	97	94.516	ENSSMAG00000011929	pcbp3	97	94.516	Scophthalmus_maximus
ENSONIG00000004611	-	97	92.357	ENSSDUG00000008502	-	95	92.357	Seriola_dumerili
ENSONIG00000004611	-	97	87.164	ENSSDUG00000011608	pcbp3	99	87.164	Seriola_dumerili
ENSONIG00000004611	-	97	87.164	ENSSLDG00000008518	pcbp3	99	87.164	Seriola_lalandi_dorsalis
ENSONIG00000004611	-	97	99.035	ENSSLDG00000020161	-	95	99.035	Seriola_lalandi_dorsalis
ENSONIG00000004611	-	92	80.756	ENSSPUG00000013214	-	90	83.085	Sphenodon_punctatus
ENSONIG00000004611	-	95	94.881	ENSSPAG00000004190	-	100	94.881	Stegastes_partitus
ENSONIG00000004611	-	97	76.946	ENSSPAG00000023341	-	95	76.946	Stegastes_partitus
ENSONIG00000004611	-	98	87.725	ENSTGUG00000003316	-	99	87.725	Taeniopygia_guttata
ENSONIG00000004611	-	98	89.490	ENSTGUG00000008158	-	99	89.490	Taeniopygia_guttata
ENSONIG00000004611	-	95	98.958	ENSTRUG00000006280	-	92	98.958	Takifugu_rubripes
ENSONIG00000004611	-	97	91.049	ENSTRUG00000013604	pcbp3	95	91.049	Takifugu_rubripes
ENSONIG00000004611	-	98	86.667	ENSTTRG00000015075	-	99	87.222	Tursiops_truncatus
ENSONIG00000004611	-	93	74.790	ENSXETG00000010491	pcbp2	74	76.331	Xenopus_tropicalis
ENSONIG00000004611	-	98	89.222	ENSXETG00000011483	pcbp1	99	89.222	Xenopus_tropicalis
ENSONIG00000004611	-	96	89.286	ENSXCOG00000020481	pcbp3	95	89.286	Xiphophorus_couchianus
ENSONIG00000004611	-	97	89.583	ENSXMAG00000008175	pcbp3	95	89.583	Xiphophorus_maculatus
ENSONIG00000004611	-	97	98.714	ENSXMAG00000028711	-	95	98.714	Xiphophorus_maculatus