EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSONIG00000004687 (Gene tree)
Gene ID: 100698488
Gene Symbol: scaf4a
Alias: -
Full Name: SR-related CTD associated factor 4
Gene Type: protein_coding
Species: Oreochromis_niloticus
Status: putative
Strand: Plus strand
Length: 13255 bases
Position: chrGL831183.1:534978-548232
Accession: 100698488
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSONIP00000005904	RRM_1	PF00076.22	3.7e-07	1	1
ENSONIP00000005903	RRM_1	PF00076.22	4.3e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSONIT00000005908	-	3165	-	ENSONIP00000005904	1055 (aa)	-	I3JAL4
ENSONIT00000005907	-	6334	XM_003446884	ENSONIP00000005903	1151 (aa)	XP_003446932	I3JAL3

Gene Model

Click here to download ENSONIG00000004687's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSONIG00000004687's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSONIG00000004687	scaf4a	51	73.780	ENSG00000156304	SCAF4	71	59.690	Homo_sapiens
ENSONIG00000004687	scaf4a	94	76.256	ENSAPOG00000002946	scaf4a	100	81.239	Acanthochromis_polyacanthus
ENSONIG00000004687	scaf4a	59	49.569	ENSAPOG00000019615	scaf4b	58	60.591	Acanthochromis_polyacanthus
ENSONIG00000004687	scaf4a	100	80.879	ENSAOCG00000000615	scaf4a	100	82.084	Amphiprion_ocellaris
ENSONIG00000004687	scaf4a	100	80.534	ENSAPEG00000021229	scaf4a	100	81.481	Amphiprion_percula
ENSONIG00000004687	scaf4a	62	65.106	ENSACAG00000002569	SCAF4	74	53.095	Anolis_carolinensis
ENSONIG00000004687	scaf4a	52	58.621	ENSACLG00000024833	scaf4b	60	57.075	Astatotilapia_calliptera
ENSONIG00000004687	scaf4a	98	51.476	ENSAMXG00000008585	scaf4a	87	51.827	Astyanax_mexicanus
ENSONIG00000004687	scaf4a	80	51.273	ENSCAFG00020026019	SCAF4	76	62.195	Canis_lupus_dingo
ENSONIG00000004687	scaf4a	62	56.112	ENSCHIG00000008385	SCAF4	71	57.143	Capra_hircus
ENSONIG00000004687	scaf4a	51	73.780	ENSCPOG00000012443	SCAF4	70	57.506	Cavia_porcellus
ENSONIG00000004687	scaf4a	51	73.780	ENSCCAG00000033727	SCAF4	71	58.673	Cebus_capucinus
ENSONIG00000004687	scaf4a	51	73.780	ENSCATG00000030379	SCAF4	70	58.718	Cercocebus_atys
ENSONIG00000004687	scaf4a	51	73.780	ENSCANG00000029847	SCAF4	71	58.673	Colobus_angolensis_palliatus
ENSONIG00000004687	scaf4a	50	74.706	ENSCGRG00001020821	Scaf4	69	55.012	Cricetulus_griseus_chok1gshd
ENSONIG00000004687	scaf4a	53	74.706	ENSCGRG00000014360	Scaf4	69	54.703	Cricetulus_griseus_crigri
ENSONIG00000004687	scaf4a	100	69.720	ENSCSEG00000019549	scaf4a	99	68.787	Cynoglossus_semilaevis
ENSONIG00000004687	scaf4a	50	55.957	ENSCVAG00000009142	scaf4b	52	72.535	Cyprinodon_variegatus
ENSONIG00000004687	scaf4a	52	71.765	ENSDNOG00000019014	SCAF4	68	51.948	Dasypus_novemcinctus
ENSONIG00000004687	scaf4a	51	75.000	ENSEASG00005007756	SCAF4	71	59.740	Equus_asinus_asinus
ENSONIG00000004687	scaf4a	51	75.000	ENSECAG00000014248	SCAF4	71	59.845	Equus_caballus
ENSONIG00000004687	scaf4a	53	53.398	ENSELUG00000002779	SCAF8	62	66.176	Esox_lucius
ENSONIG00000004687	scaf4a	86	83.854	ENSELUG00000009909	scaf4a	89	84.817	Esox_lucius
ENSONIG00000004687	scaf4a	51	75.000	ENSFCAG00000002228	SCAF4	71	58.247	Felis_catus
ENSONIG00000004687	scaf4a	68	52.318	ENSFHEG00000008284	SCAF8	50	43.857	Fundulus_heteroclitus
ENSONIG00000004687	scaf4a	63	56.522	ENSFHEG00000007634	scaf4b	52	75.177	Fundulus_heteroclitus
ENSONIG00000004687	scaf4a	94	73.575	ENSFHEG00000017866	scaf4a	78	74.127	Fundulus_heteroclitus
ENSONIG00000004687	scaf4a	72	61.757	ENSGMOG00000015188	scaf4a	66	68.132	Gadus_morhua
ENSONIG00000004687	scaf4a	67	58.848	ENSGALG00000033965	SCAF4	86	55.236	Gallus_gallus
ENSONIG00000004687	scaf4a	72	76.463	ENSGAFG00000019460	scaf4a	82	81.351	Gambusia_affinis
ENSONIG00000004687	scaf4a	82	66.819	ENSGACG00000020580	scaf4a	84	73.305	Gasterosteus_aculeatus
ENSONIG00000004687	scaf4a	56	52.805	ENSGACG00000006909	SCAF8	50	53.035	Gasterosteus_aculeatus
ENSONIG00000004687	scaf4a	58	57.806	ENSGGOG00000015557	SCAF4	53	75.159	Gorilla_gorilla
ENSONIG00000004687	scaf4a	100	97.654	ENSHBUG00000007920	scaf4a	100	97.654	Haplochromis_burtoni
ENSONIG00000004687	scaf4a	69	82.759	ENSHCOG00000006849	scaf4a	82	89.630	Hippocampus_comes
ENSONIG00000004687	scaf4a	89	73.585	ENSIPUG00000011285	scaf4	83	73.585	Ictalurus_punctatus
ENSONIG00000004687	scaf4a	60	54.404	ENSIPUG00000019311	-	57	66.906	Ictalurus_punctatus
ENSONIG00000004687	scaf4a	50	74.390	ENSSTOG00000004450	SCAF4	69	51.577	Ictidomys_tridecemlineatus
ENSONIG00000004687	scaf4a	61	60.289	ENSJJAG00000019447	Scaf4	56	65.447	Jaculus_jaculus
ENSONIG00000004687	scaf4a	70	58.759	ENSKMAG00000005742	scaf4b	52	72.535	Kryptolebias_marmoratus
ENSONIG00000004687	scaf4a	98	72.329	ENSLBEG00000014675	scaf4a	100	74.518	Labrus_bergylta
ENSONIG00000004687	scaf4a	66	54.392	ENSLACG00000001394	SCAF8	63	54.054	Latimeria_chalumnae
ENSONIG00000004687	scaf4a	84	48.509	ENSLACG00000013913	SCAF4	86	51.037	Latimeria_chalumnae
ENSONIG00000004687	scaf4a	53	48.922	ENSLOCG00000009162	scaf4a	86	57.732	Lepisosteus_oculatus
ENSONIG00000004687	scaf4a	52	72.353	ENSLAFG00000010710	SCAF4	73	57.644	Loxodonta_africana
ENSONIG00000004687	scaf4a	51	73.780	ENSMFAG00000037668	SCAF4	70	58.718	Macaca_fascicularis
ENSONIG00000004687	scaf4a	51	73.780	ENSMMUG00000001712	SCAF4	70	58.718	Macaca_mulatta
ENSONIG00000004687	scaf4a	51	73.780	ENSMNEG00000032966	SCAF4	70	59.115	Macaca_nemestrina
ENSONIG00000004687	scaf4a	51	73.780	ENSMLEG00000039674	SCAF4	70	57.895	Mandrillus_leucophaeus
ENSONIG00000004687	scaf4a	75	78.425	ENSMAMG00000013223	scaf4a	100	74.230	Mastacembelus_armatus
ENSONIG00000004687	scaf4a	99	95.826	ENSMZEG00005024349	scaf4a	100	95.826	Maylandia_zebra
ENSONIG00000004687	scaf4a	66	58.550	ENSMGAG00000014515	SCAF4	86	54.564	Meleagris_gallopavo
ENSONIG00000004687	scaf4a	51	73.780	ENSMICG00000005256	SCAF4	71	59.126	Microcebus_murinus
ENSONIG00000004687	scaf4a	50	77.358	ENSMOCG00000012087	Scaf4	73	52.036	Microtus_ochrogaster
ENSONIG00000004687	scaf4a	56	63.889	ENSMODG00000021040	SCAF4	74	56.848	Monodelphis_domestica
ENSONIG00000004687	scaf4a	76	82.699	ENSMALG00000013825	scaf4a	54	82.699	Monopterus_albus
ENSONIG00000004687	scaf4a	51	75.000	ENSMPUG00000001078	SCAF4	70	56.736	Mustela_putorius_furo
ENSONIG00000004687	scaf4a	50	73.214	ENSMLUG00000011472	SCAF4	68	56.777	Myotis_lucifugus
ENSONIG00000004687	scaf4a	52	75.000	ENSNGAG00000005214	Scaf4	71	56.927	Nannospalax_galili
ENSONIG00000004687	scaf4a	51	73.780	ENSNLEG00000003569	SCAF4	71	58.629	Nomascus_leucogenys
ENSONIG00000004687	scaf4a	52	74.390	ENSOCUG00000008336	SCAF4	70	57.828	Oryctolagus_cuniculus
ENSONIG00000004687	scaf4a	52	56.452	ENSORLG00000003420	scaf4b	57	71.918	Oryzias_latipes
ENSONIG00000004687	scaf4a	100	69.302	ENSORLG00000004384	scaf4a	100	69.732	Oryzias_latipes
ENSONIG00000004687	scaf4a	55	53.667	ENSORLG00020013853	scaf4b	56	75.182	Oryzias_latipes_hni
ENSONIG00000004687	scaf4a	100	68.270	ENSORLG00020011857	scaf4a	100	68.216	Oryzias_latipes_hni
ENSONIG00000004687	scaf4a	100	70.025	ENSORLG00015017880	scaf4a	100	71.550	Oryzias_latipes_hsok
ENSONIG00000004687	scaf4a	99	71.176	ENSOMEG00000014482	scaf4a	99	70.740	Oryzias_melastigma
ENSONIG00000004687	scaf4a	52	57.313	ENSOARG00000013894	SCAF4	70	55.128	Ovis_aries
ENSONIG00000004687	scaf4a	51	73.780	ENSPPAG00000028535	SCAF4	71	59.690	Pan_paniscus
ENSONIG00000004687	scaf4a	50	75.000	ENSPPRG00000000635	SCAF4	71	57.713	Panthera_pardus
ENSONIG00000004687	scaf4a	51	73.780	ENSPTRG00000013848	SCAF4	71	59.690	Pan_troglodytes
ENSONIG00000004687	scaf4a	51	73.780	ENSPANG00000017332	SCAF4	70	58.718	Papio_anubis
ENSONIG00000004687	scaf4a	69	63.249	ENSPKIG00000022408	scaf4a	99	65.894	Paramormyrops_kingsleyae
ENSONIG00000004687	scaf4a	53	45.378	ENSPSIG00000014242	SCAF4	83	54.336	Pelodiscus_sinensis
ENSONIG00000004687	scaf4a	78	67.384	ENSPMGG00000016741	scaf4a	76	70.968	Periophthalmus_magnuspinnatus
ENSONIG00000004687	scaf4a	56	53.281	ENSPCIG00000028183	SCAF4	53	61.742	Phascolarctos_cinereus
ENSONIG00000004687	scaf4a	96	68.133	ENSPFOG00000017156	scaf4a	97	68.046	Poecilia_formosa
ENSONIG00000004687	scaf4a	72	77.053	ENSPLAG00000001972	scaf4a	91	81.757	Poecilia_latipinna
ENSONIG00000004687	scaf4a	63	56.727	ENSPLAG00000004403	-	51	69.718	Poecilia_latipinna
ENSONIG00000004687	scaf4a	63	57.818	ENSPMEG00000006666	-	51	71.127	Poecilia_mexicana
ENSONIG00000004687	scaf4a	63	57.455	ENSPREG00000013510	scaf4b	51	70.629	Poecilia_reticulata
ENSONIG00000004687	scaf4a	51	73.780	ENSPPYG00000011355	SCAF4	71	59.690	Pongo_abelii
ENSONIG00000004687	scaf4a	51	76.829	ENSPVAG00000005220	SCAF4	71	59.791	Pteropus_vampyrus
ENSONIG00000004687	scaf4a	52	58.276	ENSPNYG00000010526	scaf4b	60	57.075	Pundamilia_nyererei
ENSONIG00000004687	scaf4a	50	74.638	ENSPNAG00000015199	-	50	74.638	Pygocentrus_nattereri
ENSONIG00000004687	scaf4a	81	55.856	ENSPNAG00000016892	scaf4a	100	52.702	Pygocentrus_nattereri
ENSONIG00000004687	scaf4a	50	74.390	ENSRNOG00000002104	Scaf4	68	55.952	Rattus_norvegicus
ENSONIG00000004687	scaf4a	60	55.828	ENSRBIG00000040007	SCAF4	70	56.915	Rhinopithecus_bieti
ENSONIG00000004687	scaf4a	51	73.780	ENSRROG00000029488	SCAF4	71	58.808	Rhinopithecus_roxellana
ENSONIG00000004687	scaf4a	56	64.352	ENSSHAG00000001581	SCAF4	74	54.133	Sarcophilus_harrisii
ENSONIG00000004687	scaf4a	87	47.265	ENSSFOG00015006338	scaf4a	83	52.336	Scleropages_formosus
ENSONIG00000004687	scaf4a	73	55.137	ENSSMAG00000003738	scaf4b	63	56.522	Scophthalmus_maximus
ENSONIG00000004687	scaf4a	99	72.143	ENSSMAG00000017901	scaf4a	99	74.126	Scophthalmus_maximus
ENSONIG00000004687	scaf4a	100	81.116	ENSSDUG00000012918	scaf4a	100	81.888	Seriola_dumerili
ENSONIG00000004687	scaf4a	100	81.857	ENSSLDG00000021671	scaf4a	100	82.545	Seriola_lalandi_dorsalis
ENSONIG00000004687	scaf4a	51	75.000	ENSSSCG00000021023	SCAF4	70	58.270	Sus_scrofa
ENSONIG00000004687	scaf4a	52	57.818	ENSTRUG00000009536	-	54	73.913	Takifugu_rubripes
ENSONIG00000004687	scaf4a	60	59.637	ENSTRUG00000023543	scaf4a	76	54.198	Takifugu_rubripes
ENSONIG00000004687	scaf4a	53	60.914	ENSTNIG00000016885	SCAF8	51	52.396	Tetraodon_nigroviridis
ENSONIG00000004687	scaf4a	51	74.390	ENSUAMG00000008860	SCAF4	71	59.635	Ursus_americanus
ENSONIG00000004687	scaf4a	50	74.390	ENSUMAG00000016962	SCAF4	72	55.937	Ursus_maritimus
ENSONIG00000004687	scaf4a	90	54.419	ENSXETG00000007351	scaf4	72	54.141	Xenopus_tropicalis