EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSONIG00000004770 (Gene tree)
Gene ID: 100710010
Gene Symbol: rnpc3
Alias: -
Full Name: RNA-binding region (RNP1%2C RRM) containing 3
Gene Type: protein_coding
Species: Oreochromis_niloticus
Status: putative
Strand: Minus strand
Length: 18753 bases
Position: chrGL831349.1:815352-834104
Accession: ZDB-GENE-060312-35
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSONIP00000006002	RRM_1	PF00076.22	3.4e-16	1	2
ENSONIP00000006002	RRM_1	PF00076.22	3.4e-16	2	2
ENSONIP00000006001	RRM_1	PF00076.22	3.4e-16	1	2
ENSONIP00000006001	RRM_1	PF00076.22	3.4e-16	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSONIT00000006005	-	1533	-	ENSONIP00000006001	510 (aa)	-	I3JAW1
ENSONIT00000006006	-	1461	-	ENSONIP00000006002	487 (aa)	-	I3JAW2

Gene Model

Click here to download ENSONIG00000004770's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSONIG00000004770's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSONIG00000004770	rnpc3	99	55.263	ENSG00000185946	RNPC3	96	57.895	Homo_sapiens
ENSONIG00000004770	rnpc3	100	85.861	ENSAPOG00000017371	rnpc3	99	85.010	Acanthochromis_polyacanthus
ENSONIG00000004770	rnpc3	99	54.858	ENSAMEG00000001694	RNPC3	94	54.747	Ailuropoda_melanoleuca
ENSONIG00000004770	rnpc3	100	86.720	ENSACIG00000021043	rnpc3	100	87.084	Amphilophus_citrinellus
ENSONIG00000004770	rnpc3	100	85.020	ENSAOCG00000014052	rnpc3	98	85.010	Amphiprion_ocellaris
ENSONIG00000004770	rnpc3	100	84.818	ENSAPEG00000008739	rnpc3	98	84.813	Amphiprion_percula
ENSONIG00000004770	rnpc3	100	81.200	ENSATEG00000021263	rnpc3	99	81.287	Anabas_testudineus
ENSONIG00000004770	rnpc3	92	56.195	ENSAPLG00000015605	RNPC3	99	55.973	Anas_platyrhynchos
ENSONIG00000004770	rnpc3	99	56.818	ENSACAG00000002029	RNPC3	95	55.397	Anolis_carolinensis
ENSONIG00000004770	rnpc3	99	54.949	ENSANAG00000019950	RNPC3	95	54.949	Aotus_nancymaae
ENSONIG00000004770	rnpc3	100	93.443	ENSACLG00000014702	rnpc3	100	92.759	Astatotilapia_calliptera
ENSONIG00000004770	rnpc3	100	66.802	ENSAMXG00000033372	rnpc3	99	65.759	Astyanax_mexicanus
ENSONIG00000004770	rnpc3	99	55.263	ENSBTAG00000019091	RNPC3	95	55.263	Bos_taurus
ENSONIG00000004770	rnpc3	99	54.582	ENSCJAG00000035686	RNPC3	94	54.858	Callithrix_jacchus
ENSONIG00000004770	rnpc3	99	54.970	ENSCAFG00000019972	RNPC3	94	54.858	Canis_familiaris
ENSONIG00000004770	rnpc3	99	54.970	ENSCAFG00020011300	RNPC3	94	54.858	Canis_lupus_dingo
ENSONIG00000004770	rnpc3	99	55.556	ENSCHIG00000020361	RNPC3	95	55.152	Capra_hircus
ENSONIG00000004770	rnpc3	99	54.125	ENSTSYG00000030256	RNPC3	95	54.348	Carlito_syrichta
ENSONIG00000004770	rnpc3	89	45.516	ENSCAPG00000013600	RNPC3	97	45.872	Cavia_aperea
ENSONIG00000004770	rnpc3	99	52.250	ENSCPOG00000031638	RNPC3	95	54.141	Cavia_porcellus
ENSONIG00000004770	rnpc3	99	54.747	ENSCCAG00000024301	RNPC3	95	54.747	Cebus_capucinus
ENSONIG00000004770	rnpc3	99	42.400	ENSCATG00000035930	-	52	48.996	Cercocebus_atys
ENSONIG00000004770	rnpc3	99	55.152	ENSCATG00000002086	RNPC3	94	55.152	Cercocebus_atys
ENSONIG00000004770	rnpc3	99	52.259	ENSCLAG00000005169	RNPC3	95	54.251	Chinchilla_lanigera
ENSONIG00000004770	rnpc3	99	54.949	ENSCSAG00000001519	RNPC3	94	54.949	Chlorocebus_sabaeus
ENSONIG00000004770	rnpc3	99	57.490	ENSCPBG00000028311	RNPC3	95	59.073	Chrysemys_picta_bellii
ENSONIG00000004770	rnpc3	98	38.911	ENSCING00000021276	-	98	38.911	Ciona_intestinalis
ENSONIG00000004770	rnpc3	98	37.810	ENSCSAVG00000002800	-	76	56.154	Ciona_savignyi
ENSONIG00000004770	rnpc3	99	54.747	ENSCANG00000031444	RNPC3	94	54.747	Colobus_angolensis_palliatus
ENSONIG00000004770	rnpc3	99	54.656	ENSCGRG00001019276	Rnpc3	95	54.545	Cricetulus_griseus_chok1gshd
ENSONIG00000004770	rnpc3	92	52.412	ENSCGRG00000000053	Rnpc3	99	52.298	Cricetulus_griseus_crigri
ENSONIG00000004770	rnpc3	100	76.171	ENSCSEG00000013475	rnpc3	99	74.606	Cynoglossus_semilaevis
ENSONIG00000004770	rnpc3	100	81.526	ENSCVAG00000002645	rnpc3	99	81.092	Cyprinodon_variegatus
ENSONIG00000004770	rnpc3	100	66.129	ENSDARG00000011247	rnpc3	97	68.478	Danio_rerio
ENSONIG00000004770	rnpc3	99	54.858	ENSDNOG00000047498	-	95	55.050	Dasypus_novemcinctus
ENSONIG00000004770	rnpc3	99	54.453	ENSDNOG00000044555	-	95	54.653	Dasypus_novemcinctus
ENSONIG00000004770	rnpc3	99	54.065	ENSDORG00000027343	Rnpc3	95	54.065	Dipodomys_ordii
ENSONIG00000004770	rnpc3	99	51.186	ENSEBUG00000002068	rnpc3	98	50.965	Eptatretus_burgeri
ENSONIG00000004770	rnpc3	99	55.781	ENSEASG00005015957	RNPC3	94	55.781	Equus_asinus_asinus
ENSONIG00000004770	rnpc3	99	55.668	ENSECAG00000021148	RNPC3	94	55.668	Equus_caballus
ENSONIG00000004770	rnpc3	100	69.608	ENSELUG00000002264	rnpc3	99	67.052	Esox_lucius
ENSONIG00000004770	rnpc3	99	54.767	ENSFCAG00000024312	RNPC3	94	54.767	Felis_catus
ENSONIG00000004770	rnpc3	92	55.752	ENSFALG00000002580	RNPC3	99	55.531	Ficedula_albicollis
ENSONIG00000004770	rnpc3	99	54.343	ENSFDAG00000019948	RNPC3	95	54.343	Fukomys_damarensis
ENSONIG00000004770	rnpc3	100	76.386	ENSFHEG00000020647	rnpc3	99	74.753	Fundulus_heteroclitus
ENSONIG00000004770	rnpc3	100	69.715	ENSGMOG00000019213	rnpc3	99	67.636	Gadus_morhua
ENSONIG00000004770	rnpc3	99	56.531	ENSGALG00000005162	RNPC3	88	56.327	Gallus_gallus
ENSONIG00000004770	rnpc3	100	78.543	ENSGAFG00000017236	rnpc3	99	78.346	Gambusia_affinis
ENSONIG00000004770	rnpc3	100	81.391	ENSGACG00000002048	rnpc3	99	80.156	Gasterosteus_aculeatus
ENSONIG00000004770	rnpc3	99	57.895	ENSGAGG00000008438	RNPC3	94	59.109	Gopherus_agassizii
ENSONIG00000004770	rnpc3	99	48.770	ENSGGOG00000026201	-	94	48.566	Gorilla_gorilla
ENSONIG00000004770	rnpc3	83	97.368	ENSHBUG00000015966	rnpc3	85	97.959	Haplochromis_burtoni
ENSONIG00000004770	rnpc3	99	54.141	ENSHGLG00000001708	RNPC3	95	54.141	Heterocephalus_glaber_female
ENSONIG00000004770	rnpc3	99	54.141	ENSHGLG00100003005	RNPC3	95	54.141	Heterocephalus_glaber_male
ENSONIG00000004770	rnpc3	99	76.844	ENSHCOG00000017135	rnpc3	97	76.844	Hippocampus_comes
ENSONIG00000004770	rnpc3	100	65.440	ENSIPUG00000002916	rnpc3	99	64.314	Ictalurus_punctatus
ENSONIG00000004770	rnpc3	99	54.545	ENSSTOG00000025020	RNPC3	95	54.527	Ictidomys_tridecemlineatus
ENSONIG00000004770	rnpc3	99	53.673	ENSJJAG00000010203	Rnpc3	95	53.673	Jaculus_jaculus
ENSONIG00000004770	rnpc3	100	80.533	ENSKMAG00000017358	rnpc3	100	79.528	Kryptolebias_marmoratus
ENSONIG00000004770	rnpc3	100	82.688	ENSLBEG00000024901	rnpc3	97	81.854	Labrus_bergylta
ENSONIG00000004770	rnpc3	100	59.919	ENSLACG00000005720	RNPC3	92	56.250	Latimeria_chalumnae
ENSONIG00000004770	rnpc3	99	64.173	ENSLOCG00000007986	rnpc3	99	60.980	Lepisosteus_oculatus
ENSONIG00000004770	rnpc3	99	55.375	ENSLAFG00000032342	RNPC3	95	54.970	Loxodonta_africana
ENSONIG00000004770	rnpc3	99	42.740	ENSMFAG00000002917	-	94	42.331	Macaca_fascicularis
ENSONIG00000004770	rnpc3	99	55.152	ENSMFAG00000002004	RNPC3	94	55.152	Macaca_fascicularis
ENSONIG00000004770	rnpc3	99	54.949	ENSMMUG00000018039	RNPC3	94	54.949	Macaca_mulatta
ENSONIG00000004770	rnpc3	82	51.185	ENSMMUG00000002098	-	84	51.643	Macaca_mulatta
ENSONIG00000004770	rnpc3	99	51.919	ENSMNEG00000033950	RNPC3	94	51.919	Macaca_nemestrina
ENSONIG00000004770	rnpc3	99	40.246	ENSMNEG00000029209	-	94	41.393	Macaca_nemestrina
ENSONIG00000004770	rnpc3	99	41.082	ENSMLEG00000034644	-	95	42.574	Mandrillus_leucophaeus
ENSONIG00000004770	rnpc3	99	55.152	ENSMLEG00000033628	RNPC3	94	55.152	Mandrillus_leucophaeus
ENSONIG00000004770	rnpc3	99	74.239	ENSMAMG00000007496	rnpc3	99	73.622	Mastacembelus_armatus
ENSONIG00000004770	rnpc3	100	94.000	ENSMZEG00005020233	rnpc3	100	94.163	Maylandia_zebra
ENSONIG00000004770	rnpc3	92	55.895	ENSMGAG00000006381	RNPC3	99	55.748	Meleagris_gallopavo
ENSONIG00000004770	rnpc3	99	55.102	ENSMAUG00000001358	Rnpc3	95	55.102	Mesocricetus_auratus
ENSONIG00000004770	rnpc3	99	54.637	ENSMICG00000029591	RNPC3	95	54.656	Microcebus_murinus
ENSONIG00000004770	rnpc3	99	55.375	ENSMOCG00000013423	Rnpc3	94	55.263	Microtus_ochrogaster
ENSONIG00000004770	rnpc3	100	75.051	ENSMMOG00000005309	rnpc3	99	76.575	Mola_mola
ENSONIG00000004770	rnpc3	99	56.098	ENSMODG00000002946	RNPC3	95	56.098	Monodelphis_domestica
ENSONIG00000004770	rnpc3	100	77.172	ENSMALG00000015471	rnpc3	99	76.984	Monopterus_albus
ENSONIG00000004770	rnpc3	99	55.601	MGP_CAROLIEiJ_G0025555	Rnpc3	96	55.397	Mus_caroli
ENSONIG00000004770	rnpc3	99	55.781	ENSMUSG00000027981	Rnpc3	99	53.747	Mus_musculus
ENSONIG00000004770	rnpc3	99	55.375	MGP_PahariEiJ_G0027001	Rnpc3	96	55.172	Mus_pahari
ENSONIG00000004770	rnpc3	99	55.578	MGP_SPRETEiJ_G0026505	Rnpc3	96	55.375	Mus_spretus
ENSONIG00000004770	rnpc3	99	54.694	ENSMPUG00000007349	RNPC3	94	54.694	Mustela_putorius_furo
ENSONIG00000004770	rnpc3	99	54.858	ENSMLUG00000028743	RNPC3	94	54.970	Myotis_lucifugus
ENSONIG00000004770	rnpc3	99	54.858	ENSNGAG00000010939	Rnpc3	95	54.858	Nannospalax_galili
ENSONIG00000004770	rnpc3	100	94.057	ENSNBRG00000012196	rnpc3	97	93.346	Neolamprologus_brichardi
ENSONIG00000004770	rnpc3	99	55.263	ENSNLEG00000012013	RNPC3	95	55.263	Nomascus_leucogenys
ENSONIG00000004770	rnpc3	99	55.172	ENSODEG00000007612	RNPC3	95	53.753	Octodon_degus
ENSONIG00000004770	rnpc3	95	57.328	ENSOANG00000008220	RNPC3	99	58.030	Ornithorhynchus_anatinus
ENSONIG00000004770	rnpc3	99	55.556	ENSOCUG00000004016	RNPC3	95	55.354	Oryctolagus_cuniculus
ENSONIG00000004770	rnpc3	100	79.098	ENSORLG00000005694	rnpc3	99	77.712	Oryzias_latipes
ENSONIG00000004770	rnpc3	100	79.098	ENSORLG00020005513	rnpc3	99	77.647	Oryzias_latipes_hni
ENSONIG00000004770	rnpc3	100	79.508	ENSORLG00015002179	rnpc3	99	77.909	Oryzias_latipes_hsok
ENSONIG00000004770	rnpc3	100	79.918	ENSOMEG00000017737	rnpc3	99	78.501	Oryzias_melastigma
ENSONIG00000004770	rnpc3	99	54.910	ENSOGAG00000026182	RNPC3	95	55.050	Otolemur_garnettii
ENSONIG00000004770	rnpc3	99	55.556	ENSOARG00000018719	RNPC3	95	55.152	Ovis_aries
ENSONIG00000004770	rnpc3	99	55.040	ENSPPAG00000037459	RNPC3	95	55.040	Pan_paniscus
ENSONIG00000004770	rnpc3	99	49.898	ENSPPAG00000030278	-	97	48.089	Pan_paniscus
ENSONIG00000004770	rnpc3	99	54.878	ENSPPRG00000020246	RNPC3	94	54.878	Panthera_pardus
ENSONIG00000004770	rnpc3	99	54.878	ENSPTIG00000009887	RNPC3	96	54.878	Panthera_tigris_altaica
ENSONIG00000004770	rnpc3	99	54.949	ENSPTRG00000033902	RNPC3	95	54.949	Pan_troglodytes
ENSONIG00000004770	rnpc3	99	49.072	ENSPTRG00000044227	-	97	47.485	Pan_troglodytes
ENSONIG00000004770	rnpc3	99	55.263	ENSPANG00000012137	RNPC3	94	55.263	Papio_anubis
ENSONIG00000004770	rnpc3	99	44.332	ENSPANG00000029957	-	96	42.685	Papio_anubis
ENSONIG00000004770	rnpc3	100	65.497	ENSPKIG00000008828	rnpc3	99	62.597	Paramormyrops_kingsleyae
ENSONIG00000004770	rnpc3	67	56.535	ENSPSIG00000007396	RNPC3	99	55.927	Pelodiscus_sinensis
ENSONIG00000004770	rnpc3	99	66.802	ENSPMGG00000011742	rnpc3	98	66.139	Periophthalmus_magnuspinnatus
ENSONIG00000004770	rnpc3	95	51.592	ENSPEMG00000020112	Rnpc3	99	52.967	Peromyscus_maniculatus_bairdii
ENSONIG00000004770	rnpc3	99	43.321	ENSPMAG00000003778	rnpc3	95	45.972	Petromyzon_marinus
ENSONIG00000004770	rnpc3	99	56.707	ENSPCIG00000004415	-	95	56.707	Phascolarctos_cinereus
ENSONIG00000004770	rnpc3	100	81.301	ENSPFOG00000009895	rnpc3	99	80.392	Poecilia_formosa
ENSONIG00000004770	rnpc3	100	81.098	ENSPLAG00000012023	rnpc3	99	80.196	Poecilia_latipinna
ENSONIG00000004770	rnpc3	100	81.504	ENSPMEG00000003663	rnpc3	99	80.588	Poecilia_mexicana
ENSONIG00000004770	rnpc3	100	81.098	ENSPREG00000010206	rnpc3	99	79.921	Poecilia_reticulata
ENSONIG00000004770	rnpc3	83	51.208	ENSPPYG00000001102	RNPC3	93	51.208	Pongo_abelii
ENSONIG00000004770	rnpc3	100	93.238	ENSPNYG00000020603	rnpc3	100	92.564	Pundamilia_nyererei
ENSONIG00000004770	rnpc3	100	58.648	ENSPNAG00000000524	rnpc3	92	57.663	Pygocentrus_nattereri
ENSONIG00000004770	rnpc3	99	54.786	ENSRNOG00000017310	Rnpc3	95	54.786	Rattus_norvegicus
ENSONIG00000004770	rnpc3	99	52.016	ENSRBIG00000043897	RNPC3	94	52.016	Rhinopithecus_bieti
ENSONIG00000004770	rnpc3	99	55.152	ENSRROG00000032334	RNPC3	94	55.152	Rhinopithecus_roxellana
ENSONIG00000004770	rnpc3	99	55.061	ENSSBOG00000024473	RNPC3	95	55.061	Saimiri_boliviensis_boliviensis
ENSONIG00000004770	rnpc3	99	56.707	ENSSHAG00000011859	RNPC3	95	56.301	Sarcophilus_harrisii
ENSONIG00000004770	rnpc3	99	69.121	ENSSFOG00015013055	rnpc3	99	68.410	Scleropages_formosus
ENSONIG00000004770	rnpc3	100	80.361	ENSSMAG00000020346	rnpc3	99	80.273	Scophthalmus_maximus
ENSONIG00000004770	rnpc3	100	84.306	ENSSDUG00000006600	rnpc3	99	84.902	Seriola_dumerili
ENSONIG00000004770	rnpc3	100	84.306	ENSSLDG00000007979	rnpc3	99	84.706	Seriola_lalandi_dorsalis
ENSONIG00000004770	rnpc3	100	56.452	ENSSPUG00000008539	-	95	55.865	Sphenodon_punctatus
ENSONIG00000004770	rnpc3	99	53.388	ENSSPUG00000003872	-	92	52.834	Sphenodon_punctatus
ENSONIG00000004770	rnpc3	100	84.426	ENSSPAG00000005633	rnpc3	99	82.446	Stegastes_partitus
ENSONIG00000004770	rnpc3	99	54.331	ENSSSCG00000037254	RNPC3	95	55.668	Sus_scrofa
ENSONIG00000004770	rnpc3	92	56.667	ENSTGUG00000004795	-	99	56.667	Taeniopygia_guttata
ENSONIG00000004770	rnpc3	100	77.755	ENSTNIG00000018963	rnpc3	99	75.984	Tetraodon_nigroviridis
ENSONIG00000004770	rnpc3	99	54.767	ENSUMAG00000007775	RNPC3	96	54.656	Ursus_maritimus
ENSONIG00000004770	rnpc3	99	54.970	ENSVVUG00000000331	RNPC3	94	54.858	Vulpes_vulpes
ENSONIG00000004770	rnpc3	99	45.817	ENSXETG00000025027	rnpc3	96	44.711	Xenopus_tropicalis
ENSONIG00000004770	rnpc3	54	79.008	ENSXCOG00000005013	rnpc3	99	77.907	Xiphophorus_couchianus
ENSONIG00000004770	rnpc3	100	79.150	ENSXMAG00000006495	rnpc3	99	79.331	Xiphophorus_maculatus